Wall clock time and date at job start Tue Mar 31 2020 13:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.75354 * 124.29250 * 2 1 4 4 C 1.75750 * 92.19378 * 179.97438 * 3 2 1 5 5 N 1.33851 * 131.29509 * 180.02562 * 4 3 2 6 6 C 1.31256 * 120.99057 * 180.02562 * 5 4 3 7 7 C 1.50697 * 118.92036 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47205 * 14.99666 * 7 6 5 9 9 C 1.53002 * 109.47089 * 255.00009 * 7 6 5 10 10 S 1.81397 * 109.47474 * 134.99539 * 7 6 5 11 11 C 1.81404 * 103.00143 * 184.99901 * 10 7 6 12 12 C 1.50701 * 109.47098 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 N 1.32133 * 122.16131 * 0.27072 * 6 5 4 21 21 C 1.32266 * 121.22167 * 359.46407 * 20 6 5 22 22 O 1.35446 * 120.51384 * 180.27102 * 21 20 6 23 23 C 1.39825 * 109.60599 * 0.02562 * 4 3 2 24 24 C 1.31868 * 124.29970 * 179.97438 * 2 1 3 25 25 C 1.50699 * 122.59286 * 0.05492 * 24 2 1 26 26 H 1.09001 * 109.47185 * 0.02607 * 1 2 3 27 27 H 1.08999 * 109.46712 * 120.02247 * 1 2 3 28 28 H 1.08997 * 109.47040 * 240.01937 * 1 2 3 29 29 H 1.09002 * 109.47205 * 180.02562 * 9 7 6 30 30 H 1.08999 * 109.46852 * 299.99342 * 9 7 6 31 31 H 1.08998 * 109.47191 * 59.99716 * 9 7 6 32 32 H 1.09002 * 109.47124 * 60.00087 * 11 10 7 33 33 H 1.09001 * 109.46975 * 300.00209 * 11 10 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 35 35 H 0.96703 * 114.00493 * 270.23075 * 22 21 20 36 36 H 1.09000 * 109.47105 * 89.97574 * 25 24 2 37 37 H 1.08998 * 109.47333 * 209.97684 * 25 24 2 38 38 H 1.09002 * 109.47083 * 329.97711 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4950 1.4487 0.0000 4 6 3.9838 0.5148 0.0008 5 7 5.2665 0.8974 0.0016 6 6 6.2357 0.0122 0.0016 7 6 7.6634 0.4948 0.0031 8 1 7.6895 1.5513 0.2700 9 6 8.2671 0.3057 -1.3899 10 16 8.6225 -0.4581 1.2124 11 6 10.2434 0.3557 1.1803 12 6 11.1700 -0.3317 2.1498 13 1 10.8191 -1.1742 2.7272 14 6 12.4662 0.1143 2.2988 15 7 12.8936 1.1399 1.5953 16 14 13.6149 -0.7383 3.5000 17 1 12.8969 -1.8565 4.1629 18 1 14.7910 -1.2715 2.7666 19 1 14.0703 0.2349 4.5251 20 7 6.0008 -1.2880 -0.0045 21 6 4.7659 -1.7616 -0.0004 22 8 4.5416 -3.0974 -0.0013 23 6 3.6814 -0.8503 0.0004 24 6 2.2501 -1.0894 0.0005 25 6 1.6587 -2.4754 -0.0001 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5142 -0.8898 28 1 -0.3633 -0.5135 0.8901 29 1 9.2999 0.6543 -1.3887 30 1 8.2411 -0.7508 -1.6568 31 1 7.6908 0.8783 -2.1165 32 1 10.1306 1.4017 1.4656 33 1 10.6599 0.2964 0.1747 34 1 13.8054 1.4539 1.7005 35 1 4.4765 -3.4848 -0.8849 36 1 1.5165 -2.8094 -1.0279 37 1 2.3344 -3.1591 0.5138 38 1 0.6973 -2.4605 0.5133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413015999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:33 Heat of formation + Delta-G solvation = 10.947311 kcal Electronic energy + Delta-G solvation = -21854.146161 eV Core-core repulsion = 18528.347264 eV Total energy + Delta-G solvation = -3325.798897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40464 -38.00084 -37.56790 -33.88921 -33.15124 -32.94452 -31.14802 -29.53174 -28.46876 -26.68762 -25.00092 -23.78617 -23.10700 -22.11298 -19.72186 -19.16406 -18.37622 -17.11872 -16.80409 -16.27158 -15.65282 -15.29402 -14.88446 -14.55754 -14.35291 -14.19796 -13.93114 -13.46085 -13.22772 -13.13210 -12.88130 -12.74171 -12.48290 -12.34426 -12.16968 -12.11110 -11.57542 -11.51940 -11.35332 -11.14866 -10.86482 -10.71103 -10.66379 -10.61125 -9.86872 -9.54377 -9.37828 -8.99653 -8.73672 -8.58720 -8.23575 -6.62548 -6.16577 -4.20061 0.13418 0.70432 0.85215 1.54337 1.76927 2.46128 3.12630 3.27683 3.34767 3.41473 3.50103 3.73123 3.97590 4.09430 4.31123 4.38853 4.65200 4.71383 4.86389 5.00261 5.08218 5.19094 5.20808 5.28363 5.31916 5.38601 5.48543 5.53467 5.74282 5.84002 5.97215 6.07619 6.12902 6.43163 6.71925 7.11584 7.13590 7.15496 7.78625 7.94181 8.04664 8.81987 9.42660 10.94848 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.002740 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.351588 B =10217.575795 C =10685.692155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.181 4.181 3 S 0.164 5.836 4 C 0.104 3.896 5 N -0.490 5.490 6 C 0.396 3.604 7 C -0.007 4.007 8 H 0.108 0.892 9 C -0.136 4.136 10 S -0.252 6.252 11 C 0.082 3.918 12 C -0.509 4.509 13 H 0.068 0.932 14 C 0.065 3.935 15 N -0.893 5.893 16 Si 0.906 3.094 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.282 1.282 20 N -0.506 5.506 21 C 0.417 3.583 22 O -0.465 6.465 23 C -0.199 4.199 24 C -0.065 4.065 25 C -0.101 4.101 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.407 0.593 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.120 -3.343 -8.066 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.297 4.297 3 S 0.425 5.575 4 C -0.148 4.148 5 N -0.208 5.208 6 C 0.125 3.875 7 C -0.137 4.137 8 H 0.126 0.874 9 C -0.196 4.196 10 S -0.025 6.025 11 C -0.065 4.065 12 C -0.549 4.549 13 H 0.086 0.914 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.733 3.267 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.208 1.208 20 N -0.231 5.231 21 C 0.219 3.781 22 O -0.273 6.273 23 C -0.214 4.214 24 C -0.077 4.077 25 C -0.160 4.160 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.267 0.733 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.779 -2.158 -6.901 26.774 hybrid contribution 0.711 -1.070 -0.514 1.384 sum -25.068 -3.228 -7.415 26.341 Atomic orbital electron populations 1.20356 0.86887 1.03218 1.03282 1.23869 1.00447 0.95577 1.09831 1.84247 0.90330 1.05612 1.77355 1.23782 0.97316 0.93943 0.99715 1.67855 0.97361 1.38836 1.16757 1.22205 0.94485 0.82805 0.88040 1.21792 0.88213 1.03049 1.00640 0.87391 1.22021 1.01551 1.03205 0.92841 1.87046 1.15143 1.48260 1.52012 1.21176 0.86961 0.97391 1.00947 1.20688 0.95318 1.15947 1.22903 0.91428 1.24950 0.97675 0.95036 0.96182 1.69962 1.17558 1.25026 1.40548 0.86306 0.80320 0.79534 0.80571 1.19410 1.20736 1.20764 1.67737 1.22122 1.17262 1.15939 1.19262 0.85962 0.84399 0.88463 1.84692 1.92423 1.16149 1.34044 1.20652 0.94995 0.94378 1.11412 1.19230 0.89416 0.96940 1.02104 1.20653 1.01159 0.91559 1.02612 0.91103 0.90182 0.90103 0.90318 0.90942 0.92739 0.94612 0.94187 0.92585 0.73262 0.90892 0.89843 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 9.33 36.01 0.34 -0.09 16 2 C -0.18 -1.64 6.38 -36.21 -0.23 -1.87 16 3 S 0.16 1.80 23.19 -107.50 -2.49 -0.69 16 4 C 0.10 1.55 7.70 -16.08 -0.12 1.43 16 5 N -0.49 -8.45 10.34 -9.46 -0.10 -8.55 16 6 C 0.40 7.17 6.43 -157.36 -1.01 6.16 16 7 C -0.01 -0.12 3.18 -27.88 -0.09 -0.21 16 8 H 0.11 2.02 8.11 -51.92 -0.42 1.60 16 9 C -0.14 -2.27 9.08 37.16 0.34 -1.94 16 10 S -0.25 -5.78 20.60 -107.50 -2.22 -8.00 16 11 C 0.08 2.16 5.39 36.01 0.19 2.35 16 12 C -0.51 -14.55 9.13 -34.44 -0.31 -14.87 16 13 H 0.07 1.95 7.71 -52.49 -0.40 1.55 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 15 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 16 Si 0.91 21.67 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 N -0.51 -8.90 9.74 -10.37 -0.10 -9.00 16 21 C 0.42 6.03 7.90 -16.06 -0.13 5.91 16 22 O -0.47 -5.18 11.51 -18.03 -0.21 -5.38 16 23 C -0.20 -2.68 6.05 -105.28 -0.64 -3.32 16 24 C -0.06 -0.66 5.96 -103.80 -0.62 -1.27 16 25 C -0.10 -0.70 9.45 36.01 0.34 -0.36 16 26 H 0.07 0.32 8.13 -51.93 -0.42 -0.10 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.36 7.85 -51.93 -0.41 -0.05 16 29 H 0.08 1.37 6.92 -51.93 -0.36 1.01 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.04 1.07 7.14 -51.92 -0.37 0.70 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.41 2.31 9.06 45.56 0.41 2.72 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.65 6.50 -51.93 -0.34 0.31 16 38 H 0.07 0.39 7.21 -51.93 -0.37 0.01 16 LS Contribution 348.61 15.07 5.25 5.25 Total: -1.00 -33.51 348.61 -10.12 -43.63 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -3.93 Total: -2.23 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.04 Total: -6.34 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.54 Total: -42.89 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.21 Total: -5.38 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -4.71 Total: -8.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.51 -10.12 -43.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.581 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds