Wall clock time and date at job start Tue Mar 31 2020 13:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.75354 * 124.29250 * 2 1 4 4 C 1.75750 * 92.19378 * 179.97438 * 3 2 1 5 5 N 1.33851 * 131.29509 * 180.02562 * 4 3 2 6 6 C 1.31256 * 120.99057 * 180.02562 * 5 4 3 7 7 C 1.50697 * 118.92036 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47205 * 14.99666 * 7 6 5 9 9 C 1.53002 * 109.47089 * 255.00009 * 7 6 5 10 10 S 1.81397 * 109.47474 * 134.99539 * 7 6 5 11 11 C 1.81404 * 103.00143 * 184.99901 * 10 7 6 12 12 C 1.50701 * 109.47098 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 N 1.32133 * 122.16131 * 0.27072 * 6 5 4 21 21 C 1.32266 * 121.22167 * 359.46407 * 20 6 5 22 22 O 1.35446 * 120.51384 * 180.27102 * 21 20 6 23 23 C 1.39825 * 109.60599 * 0.02562 * 4 3 2 24 24 C 1.31868 * 124.29970 * 179.97438 * 2 1 3 25 25 C 1.50699 * 122.59286 * 0.05492 * 24 2 1 26 26 H 1.09001 * 109.47185 * 0.02607 * 1 2 3 27 27 H 1.08999 * 109.46712 * 120.02247 * 1 2 3 28 28 H 1.08997 * 109.47040 * 240.01937 * 1 2 3 29 29 H 1.09002 * 109.47205 * 180.02562 * 9 7 6 30 30 H 1.08999 * 109.46852 * 299.99342 * 9 7 6 31 31 H 1.08998 * 109.47191 * 59.99716 * 9 7 6 32 32 H 1.09002 * 109.47124 * 60.00087 * 11 10 7 33 33 H 1.09001 * 109.46975 * 300.00209 * 11 10 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 35 35 H 0.96703 * 114.00493 * 270.23075 * 22 21 20 36 36 H 1.09000 * 109.47105 * 89.97574 * 25 24 2 37 37 H 1.08998 * 109.47333 * 209.97684 * 25 24 2 38 38 H 1.09002 * 109.47083 * 329.97711 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4950 1.4487 0.0000 4 6 3.9838 0.5148 0.0008 5 7 5.2665 0.8974 0.0016 6 6 6.2357 0.0122 0.0016 7 6 7.6634 0.4948 0.0031 8 1 7.6895 1.5513 0.2700 9 6 8.2671 0.3057 -1.3899 10 16 8.6225 -0.4581 1.2124 11 6 10.2434 0.3557 1.1803 12 6 11.1700 -0.3317 2.1498 13 1 10.8191 -1.1742 2.7272 14 6 12.4662 0.1143 2.2988 15 7 12.8936 1.1399 1.5953 16 14 13.6149 -0.7383 3.5000 17 1 12.8969 -1.8565 4.1629 18 1 14.7910 -1.2715 2.7666 19 1 14.0703 0.2349 4.5251 20 7 6.0008 -1.2880 -0.0045 21 6 4.7659 -1.7616 -0.0004 22 8 4.5416 -3.0974 -0.0013 23 6 3.6814 -0.8503 0.0004 24 6 2.2501 -1.0894 0.0005 25 6 1.6587 -2.4754 -0.0001 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5142 -0.8898 28 1 -0.3633 -0.5135 0.8901 29 1 9.2999 0.6543 -1.3887 30 1 8.2411 -0.7508 -1.6568 31 1 7.6908 0.8783 -2.1165 32 1 10.1306 1.4017 1.4656 33 1 10.6599 0.2964 0.1747 34 1 13.8054 1.4539 1.7005 35 1 4.4765 -3.4848 -0.8849 36 1 1.5165 -2.8094 -1.0279 37 1 2.3344 -3.1591 0.5138 38 1 0.6973 -2.4605 0.5133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413015999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:33 Heat of formation + Delta-G solvation = -12.279213 kcal Electronic energy + Delta-G solvation = -21855.153338 eV Core-core repulsion = 18528.347264 eV Total energy + Delta-G solvation = -3326.806075 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.50385 -38.99133 -38.40982 -35.31833 -35.07047 -34.16210 -32.07922 -30.65372 -30.13172 -27.58510 -26.13443 -25.23552 -24.79412 -23.38149 -20.58163 -20.19540 -19.46453 -18.67925 -18.05174 -17.64913 -17.00911 -16.61936 -16.37112 -15.94337 -15.50518 -15.17453 -15.02291 -14.61041 -14.47732 -14.37153 -14.17188 -13.87025 -13.55506 -13.48299 -13.27253 -13.09166 -12.97648 -12.82841 -12.66813 -12.61166 -12.48392 -11.91044 -11.84435 -11.73470 -11.65878 -11.53199 -10.74658 -10.67938 -10.49786 -9.95859 -9.10913 -8.50417 -8.33205 -6.45868 -0.91933 -0.40033 -0.09666 0.69993 0.71810 1.03953 1.39764 1.39852 1.54760 1.92252 2.09118 2.32307 2.37081 2.61797 3.01316 3.23209 3.32785 3.63619 3.78845 3.92362 4.04425 4.18760 4.33543 4.55014 4.66240 4.69671 4.73622 4.79117 4.84651 4.88326 4.94344 4.95004 5.09978 5.13870 5.16966 5.48245 5.57167 5.59371 5.89153 6.36949 6.60839 6.75527 7.21573 8.79078 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.002740 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.351588 B =10217.575795 C =10685.692155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.162 4.162 3 S 0.183 5.817 4 C 0.065 3.935 5 N -0.507 5.507 6 C 0.375 3.625 7 C 0.006 3.994 8 H 0.103 0.897 9 C -0.127 4.127 10 S -0.268 6.268 11 C 0.091 3.909 12 C -0.535 4.535 13 H 0.059 0.941 14 C 0.017 3.983 15 N -0.923 5.923 16 Si 0.976 3.024 17 H -0.268 1.268 18 H -0.270 1.270 19 H -0.272 1.272 20 N -0.537 5.537 21 C 0.415 3.585 22 O -0.463 6.463 23 C -0.193 4.193 24 C -0.081 4.081 25 C -0.096 4.096 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.013 0.987 33 H 0.026 0.974 34 H 0.271 0.729 35 H 0.430 0.570 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.042 -4.417 -8.227 30.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.278 4.278 3 S 0.444 5.556 4 C -0.185 4.185 5 N -0.225 5.225 6 C 0.103 3.897 7 C -0.124 4.124 8 H 0.121 0.879 9 C -0.186 4.186 10 S -0.041 6.041 11 C -0.057 4.057 12 C -0.574 4.574 13 H 0.077 0.923 14 C -0.184 4.184 15 N -0.561 5.561 16 Si 0.799 3.201 17 H -0.192 1.192 18 H -0.195 1.195 19 H -0.197 1.197 20 N -0.263 5.263 21 C 0.218 3.782 22 O -0.274 6.274 23 C -0.209 4.209 24 C -0.092 4.092 25 C -0.155 4.155 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.294 0.706 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.729 -3.245 -7.085 29.768 hybrid contribution 1.309 -0.718 -0.532 1.585 sum -27.420 -3.964 -7.617 28.733 Atomic orbital electron populations 1.20589 0.83669 1.04573 1.05102 1.24436 1.02178 0.94018 1.07200 1.84193 0.88579 1.06512 1.76281 1.24352 0.97405 0.95804 1.00935 1.67753 0.98464 1.39048 1.17268 1.21742 0.93940 0.83430 0.90632 1.21710 0.88854 1.01760 1.00089 0.87871 1.21916 1.00963 1.03485 0.92256 1.86867 1.13738 1.48926 1.54586 1.20840 0.88943 0.96257 0.99613 1.20965 0.96517 1.16219 1.23720 0.92297 1.25875 0.99159 0.95569 0.97824 1.70057 1.18302 1.26082 1.41701 0.85236 0.78079 0.78491 0.78277 1.19183 1.19527 1.19731 1.67643 1.24098 1.17112 1.17478 1.19403 0.85484 0.85560 0.87766 1.84659 1.92129 1.14564 1.36058 1.20991 0.96601 0.93585 1.09721 1.19501 0.87642 0.98997 1.03062 1.20720 1.01568 0.89131 1.04084 0.90071 0.87945 0.88357 0.91569 0.91053 0.90215 0.96825 0.95566 0.92016 0.70585 0.88883 0.90834 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 9.33 71.24 0.66 0.17 16 2 C -0.16 -2.41 6.38 24.87 0.16 -2.25 16 3 S 0.18 3.72 23.19 -56.49 -1.31 2.41 16 4 C 0.07 1.92 7.70 84.77 0.65 2.57 16 5 N -0.51 -17.87 10.34 -183.84 -1.90 -19.77 16 6 C 0.37 13.97 6.43 138.81 0.89 14.87 16 7 C 0.01 0.26 3.18 29.85 0.09 0.35 16 8 H 0.10 4.09 8.11 -2.39 -0.02 4.07 16 9 C -0.13 -4.37 9.08 71.98 0.65 -3.72 16 10 S -0.27 -12.91 20.60 -56.49 -1.16 -14.07 16 11 C 0.09 5.02 5.39 71.24 0.38 5.41 16 12 C -0.54 -31.65 9.13 25.60 0.23 -31.42 16 13 H 0.06 3.51 7.71 -2.91 -0.02 3.49 16 14 C 0.02 0.96 5.46 84.66 0.46 1.42 16 15 N -0.92 -54.99 13.29 21.45 0.28 -54.70 16 16 Si 0.98 44.81 29.54 68.60 2.03 46.83 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 N -0.54 -19.28 9.74 -299.71 -2.92 -22.20 16 21 C 0.41 11.86 7.90 85.47 0.68 12.53 16 22 O -0.46 -9.75 11.51 -87.42 -1.01 -10.76 16 23 C -0.19 -5.00 6.05 -20.29 -0.12 -5.12 16 24 C -0.08 -1.41 5.96 -18.92 -0.11 -1.52 16 25 C -0.10 -0.99 9.45 71.24 0.67 -0.31 16 26 H 0.08 0.38 8.13 -2.39 -0.02 0.36 16 27 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.10 0.37 7.85 -2.39 -0.02 0.35 16 29 H 0.07 2.42 6.92 -2.39 -0.02 2.40 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.03 1.48 7.14 -2.39 -0.02 1.46 16 34 H 0.27 14.97 8.31 -92.71 -0.77 14.19 16 35 H 0.43 4.16 9.06 -74.06 -0.67 3.49 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.94 6.50 -2.39 -0.02 0.92 16 38 H 0.09 0.57 7.21 -2.39 -0.02 0.55 16 Total: -1.00 -75.23 348.61 -0.24 -75.47 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 0.44 Total: 3.80 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.31 Total: -7.02 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -4.53 Total: -96.67 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -1.01 Total: -10.76 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -9.18 SS G_CDS: -2.47 Total: -11.65 kcal Total: -75.23 -0.24 -75.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.192 kcal (2) G-P(sol) polarization free energy of solvation -75.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds