Wall clock time and date at job start Tue Mar 31 2020 14:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34703 * 116.99800 * 2 1 4 4 O 1.21469 * 120.00492 * 0.02562 * 3 2 1 5 5 C 1.47733 * 120.00005 * 179.97438 * 3 2 1 6 6 C 1.39649 * 120.14700 * 359.97438 * 5 3 2 7 7 C 1.37927 * 119.84450 * 180.02562 * 6 5 3 8 8 C 1.38390 * 120.14689 * 359.72785 * 7 6 5 9 9 C 1.38347 * 120.30957 * 0.54802 * 8 7 6 10 10 C 1.50693 * 119.92897 * 179.72563 * 9 8 7 11 11 H 1.08991 * 109.47178 * 179.72933 * 10 9 8 12 12 S 1.81406 * 109.46828 * 299.72836 * 10 9 8 13 13 C 1.81401 * 102.99775 * 185.00112 * 12 10 9 14 14 C 1.50700 * 109.47014 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00094 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99897 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00156 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99940 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47179 * 60.00230 * 18 16 14 20 20 H 1.48500 * 109.47169 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46959 * 300.00300 * 18 16 14 22 22 C 1.50702 * 109.47236 * 59.72532 * 10 9 8 23 23 O 1.20822 * 119.99854 * 129.72551 * 22 10 9 24 24 O 1.34234 * 119.99997 * 310.00386 * 22 10 9 25 25 C 1.45199 * 116.99947 * 179.72219 * 24 22 10 26 26 C 1.37972 * 120.14333 * 359.45043 * 9 8 7 27 27 H 1.09006 * 109.47021 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47046 * 299.99780 * 1 2 3 29 29 H 1.09004 * 109.46941 * 60.00202 * 1 2 3 30 30 H 1.07995 * 120.07703 * 0.04814 * 6 5 3 31 31 H 1.07995 * 119.92027 * 180.02562 * 7 6 5 32 32 H 1.08005 * 119.84585 * 180.27552 * 8 7 6 33 33 H 1.09004 * 109.47053 * 299.99619 * 13 12 10 34 34 H 1.08991 * 109.47679 * 59.99613 * 13 12 10 35 35 H 0.96993 * 120.00202 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.46967 * 299.99772 * 25 24 22 37 37 H 1.09002 * 109.46640 * 59.99976 * 25 24 22 38 38 H 1.08997 * 109.46765 * 179.97438 * 25 24 22 39 39 H 1.07996 * 120.07199 * 180.29231 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3025 0.1084 0.0017 7 6 5.6794 0.1879 0.0027 8 6 6.3043 1.4227 -0.0030 9 6 5.5540 2.5850 0.0017 10 6 6.2434 3.9249 0.0017 11 1 5.4958 4.7181 0.0008 12 16 7.2792 4.0719 1.4836 13 6 7.8924 5.7763 1.3854 14 6 8.7835 6.0585 2.5675 15 1 8.9634 5.2893 3.3040 16 6 9.3701 7.2983 2.7082 17 7 9.1516 8.2349 1.8111 18 14 10.4753 7.6479 4.1731 19 1 11.6239 6.7068 4.1623 20 1 10.9772 9.0432 4.0928 21 1 9.7028 7.4717 5.4291 22 6 7.1059 4.0461 -1.2281 23 8 7.0214 5.0251 -1.9312 24 8 7.9640 3.0639 -1.5455 25 6 8.7585 3.2455 -2.7473 26 6 4.1758 2.5199 0.0006 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.8160 -0.8558 0.0013 31 1 6.2712 -0.7155 0.0031 32 1 7.3829 1.4792 -0.0066 33 1 8.4594 5.9059 0.4634 34 1 7.0493 6.4669 1.3934 35 1 9.5645 9.1069 1.9099 36 1 8.0974 3.3463 -3.6080 37 1 9.3663 4.1449 -2.6485 38 1 9.4084 2.3817 -2.8870 39 1 3.5912 3.4279 -0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:46 Heat of formation + Delta-G solvation = -147.896510 kcal Electronic energy + Delta-G solvation = -24346.986376 eV Core-core repulsion = 20539.253871 eV Total energy + Delta-G solvation = -3807.732504 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79674 -40.29257 -38.92508 -36.59797 -36.27452 -33.46918 -33.20767 -31.44096 -29.00792 -28.53932 -27.83400 -26.89008 -24.26498 -23.21229 -22.24356 -21.46692 -20.56892 -18.17515 -17.45080 -17.34543 -16.84021 -16.54972 -16.39782 -16.18098 -16.01911 -15.38883 -15.04264 -14.58816 -14.22964 -13.76529 -13.72902 -13.50643 -13.33984 -13.21990 -12.69534 -12.46960 -12.41212 -12.31889 -12.22896 -12.03653 -11.63490 -11.33304 -11.04834 -10.90394 -10.82426 -10.70396 -10.61634 -10.58221 -10.24102 -9.70274 -9.19369 -9.06803 -8.82818 -8.66468 -6.98797 -6.23334 -4.30228 0.56322 1.04330 1.89425 2.38791 2.42344 2.72137 2.85078 3.25339 3.28971 3.32239 3.61194 3.71690 4.30829 4.39376 4.49151 4.66471 4.82229 4.84428 4.92153 4.99331 5.13037 5.18231 5.21046 5.23548 5.28436 5.34107 5.37719 5.63027 5.71045 5.75586 6.04568 6.10582 6.27578 6.38913 6.50511 6.68814 6.98268 7.03180 7.54184 7.67741 7.89174 7.91914 8.70988 9.33452 10.87430 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015127 B = 0.003189 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.525384 B = 8778.596820 C = 9615.771307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.504 6.504 5 C -0.134 4.134 6 C -0.057 4.057 7 C -0.134 4.134 8 C -0.043 4.043 9 C -0.077 4.077 10 C -0.027 4.027 11 H 0.131 0.869 12 S -0.230 6.230 13 C 0.080 3.920 14 C -0.518 4.518 15 H 0.068 0.932 16 C 0.068 3.932 17 N -0.888 5.888 18 Si 0.909 3.091 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.478 3.522 23 O -0.499 6.499 24 O -0.345 6.345 25 C 0.035 3.965 26 C -0.034 4.034 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.268 0.732 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.986 -18.896 -7.072 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.393 6.393 5 C -0.136 4.136 6 C -0.076 4.076 7 C -0.152 4.152 8 C -0.062 4.062 9 C -0.078 4.078 10 C -0.155 4.155 11 H 0.149 0.851 12 S 0.001 5.999 13 C -0.067 4.067 14 C -0.557 4.557 15 H 0.086 0.914 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.735 3.265 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.198 1.198 22 C 0.317 3.683 23 O -0.386 6.386 24 O -0.261 6.261 25 C -0.059 4.059 26 C -0.053 4.053 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.969 -18.859 -6.562 22.318 hybrid contribution 0.200 1.536 -0.334 1.585 sum -9.769 -17.323 -6.895 21.049 Atomic orbital electron populations 1.23283 0.75975 1.03705 1.02740 1.86530 1.23551 1.32701 1.84488 1.21206 0.89115 0.81408 0.72634 1.90851 1.66772 1.35991 1.45708 1.18901 0.88772 0.94768 1.11114 1.21473 0.94029 0.97666 0.94443 1.21154 0.94131 0.97992 1.01943 1.21598 1.01721 0.91137 0.91768 1.18933 0.92703 0.92876 1.03301 1.22025 0.99054 0.99675 0.94790 0.85147 1.87064 1.59684 1.27194 1.25959 1.21266 0.99039 0.84908 1.01459 1.20540 1.29117 0.98528 1.07547 0.91355 1.24972 0.96393 0.95454 0.96868 1.69955 1.43439 1.04444 1.34664 0.86384 0.80559 0.77411 0.82143 1.19839 1.20983 1.19794 1.23314 0.78955 0.80739 0.85292 1.90698 1.66406 1.30958 1.50564 1.86480 1.50124 1.45222 1.44288 1.23268 0.94453 1.03510 0.84694 1.21095 0.93357 0.97232 0.93654 0.87982 0.91732 0.91822 0.84447 0.84663 0.83478 0.94400 0.94028 0.92266 0.92243 0.91642 0.88101 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.69 9.82 -40.50 -0.40 -4.08 16 3 C 0.51 6.54 7.90 34.61 0.27 6.81 16 4 O -0.50 -7.74 16.14 -19.24 -0.31 -8.05 16 5 C -0.13 -1.67 5.87 -104.98 -0.62 -2.29 16 6 C -0.06 -0.58 9.62 -39.17 -0.38 -0.96 16 7 C -0.13 -1.35 10.03 -39.64 -0.40 -1.75 16 8 C -0.04 -0.55 8.31 -39.49 -0.33 -0.88 16 9 C -0.08 -1.13 4.77 -104.68 -0.50 -1.62 16 10 C -0.03 -0.48 2.89 -29.04 -0.08 -0.56 16 11 H 0.13 2.27 7.85 -51.93 -0.41 1.86 16 12 S -0.23 -4.79 20.68 -107.50 -2.22 -7.01 16 13 C 0.08 2.08 5.48 36.01 0.20 2.28 16 14 C -0.52 -14.42 9.13 -34.44 -0.31 -14.74 16 15 H 0.07 1.87 7.71 -52.49 -0.40 1.47 16 16 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 17 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 18 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.48 8.77 6.36 36.01 0.23 9.00 16 23 O -0.50 -10.51 16.84 -18.75 -0.32 -10.83 16 24 O -0.34 -5.39 8.27 -39.27 -0.32 -5.72 16 25 C 0.03 0.43 10.56 101.05 1.07 1.49 16 26 C -0.03 -0.47 9.22 -39.17 -0.36 -0.83 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.14 1.07 7.61 -52.49 -0.40 0.67 16 31 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.15 1.91 6.81 -52.48 -0.36 1.55 16 33 H 0.04 1.06 8.00 -51.92 -0.42 0.64 16 34 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 37 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.14 1.94 7.53 -52.49 -0.40 1.55 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -33.20 360.89 -7.55 -40.76 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.90 Total: -0.51 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -0.24 Total: -0.90 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.74 Total: -25.26 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.35 Total: -28.68 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -2.22 Total: -7.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.20 -7.55 -40.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.141 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds