Wall clock time and date at job start Tue Mar 31 2020 14:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34706 * 116.99912 * 2 1 4 4 O 1.21469 * 120.00048 * 0.02562 * 3 2 1 5 5 C 1.47720 * 119.99970 * 180.02562 * 3 2 1 6 6 C 1.39648 * 120.14842 * 359.97438 * 5 3 2 7 7 C 1.37925 * 119.84537 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.15386 * 0.02562 * 7 6 5 9 9 C 1.38349 * 120.30320 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.92520 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46884 * 180.02562 * 10 9 8 12 12 S 1.81395 * 109.47237 * 60.00008 * 10 9 8 13 13 C 1.81398 * 102.99873 * 175.00064 * 12 10 9 14 14 C 1.50706 * 109.46884 * 180.02562 * 13 12 10 15 15 H 1.07991 * 120.00027 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99811 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00008 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00012 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47355 * 89.99701 * 18 16 14 20 20 H 1.48499 * 109.47013 * 209.99836 * 18 16 14 21 21 H 1.48495 * 109.46909 * 329.99541 * 18 16 14 22 22 C 1.50706 * 109.46663 * 299.99981 * 10 9 8 23 23 O 1.20826 * 119.99287 * 229.99849 * 22 10 9 24 24 O 1.34228 * 120.00394 * 50.00347 * 22 10 9 25 25 C 1.45198 * 116.99985 * 179.97438 * 24 22 10 26 26 C 1.37964 * 120.14717 * 0.27319 * 9 8 7 27 27 H 1.08998 * 109.46795 * 300.00077 * 1 2 3 28 28 H 1.09002 * 109.47243 * 59.99592 * 1 2 3 29 29 H 1.09001 * 109.47260 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.07643 * 0.02562 * 6 5 3 31 31 H 1.08002 * 119.92288 * 180.02562 * 7 6 5 32 32 H 1.08000 * 119.84895 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.46932 * 299.99496 * 13 12 10 34 34 H 1.09002 * 109.47277 * 60.00463 * 13 12 10 35 35 H 0.96998 * 120.00068 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47379 * 299.99940 * 25 24 22 37 37 H 1.09001 * 109.46782 * 180.02562 * 25 24 22 38 38 H 1.09004 * 109.47085 * 60.00143 * 25 24 22 39 39 H 1.08000 * 120.07658 * 179.72627 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3024 0.1084 -0.0006 7 6 5.6794 0.1878 -0.0006 8 6 6.3044 1.4225 0.0000 9 6 5.5540 2.5848 0.0000 10 6 6.2435 3.9248 0.0011 11 1 5.4959 4.7181 0.0014 12 16 7.2816 4.0720 -1.4791 13 6 7.8948 5.7763 -1.3796 14 6 8.7877 6.0586 -2.5604 15 1 8.9686 5.2895 -3.2966 16 6 9.3738 7.2987 -2.7006 17 7 10.1534 7.5449 -3.7307 18 14 9.0614 8.6287 -1.4267 19 1 10.0873 8.5401 -0.3567 20 1 9.1365 9.9626 -2.0751 21 1 7.7122 8.4409 -0.8356 22 6 7.1041 4.0458 1.2324 23 8 7.0221 5.0270 1.9327 24 8 7.9617 3.0636 1.5510 25 6 8.7591 3.2480 2.7503 26 6 4.1759 2.5198 0.0051 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.8159 -0.8558 -0.0006 31 1 6.2712 -0.7156 -0.0010 32 1 7.3829 1.4790 -0.0005 33 1 7.0515 6.4669 -1.3891 34 1 8.4603 5.9057 -0.4568 35 1 10.5654 8.4175 -3.8296 36 1 9.3678 4.1463 2.6474 37 1 9.4083 2.3838 2.8914 38 1 8.1001 3.3524 3.6123 39 1 3.5913 3.4279 0.0096 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:49 Heat of formation + Delta-G solvation = -143.402290 kcal Electronic energy + Delta-G solvation = -24426.085839 eV Core-core repulsion = 20618.548219 eV Total energy + Delta-G solvation = -3807.537620 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85498 -40.40313 -38.99169 -36.63673 -36.40797 -33.55346 -33.12315 -31.49593 -29.54702 -28.90684 -27.88970 -26.99100 -24.31738 -22.82630 -22.22645 -21.54397 -20.63531 -18.24148 -17.57207 -17.38960 -17.01677 -16.75554 -16.58027 -16.36502 -16.08899 -15.49455 -15.06764 -14.48978 -14.17733 -13.85537 -13.77681 -13.60369 -13.50586 -13.40028 -12.89118 -12.66341 -12.65772 -12.42234 -12.32593 -12.11448 -11.71597 -11.41032 -11.08152 -10.90804 -10.80021 -10.73476 -10.69440 -10.62161 -10.23058 -9.79544 -9.28184 -9.16758 -8.90120 -8.77805 -7.13713 -6.25129 -4.29059 0.50926 0.96856 1.76586 2.32650 2.37040 2.57650 2.73475 3.19351 3.26027 3.31696 3.41498 3.64664 4.26755 4.29521 4.44366 4.57468 4.74367 4.80883 4.89378 4.93937 5.06190 5.11211 5.13602 5.16931 5.20272 5.23825 5.31354 5.54146 5.63349 5.69998 5.99960 6.05716 6.22456 6.31757 6.37369 6.47710 6.56400 6.62808 7.31374 7.50050 7.75430 8.20377 8.74969 9.30121 10.86284 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.003336 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.497726 B = 8391.936412 C = 9058.829144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.505 6.505 5 C -0.134 4.134 6 C -0.056 4.056 7 C -0.133 4.133 8 C -0.043 4.043 9 C -0.079 4.079 10 C -0.036 4.036 11 H 0.132 0.868 12 S -0.190 6.190 13 C 0.034 3.966 14 C -0.518 4.518 15 H 0.086 0.914 16 C 0.085 3.915 17 N -0.887 5.887 18 Si 0.874 3.126 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.264 1.264 22 C 0.478 3.522 23 O -0.503 6.503 24 O -0.343 6.343 25 C 0.034 3.966 26 C -0.033 4.033 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.041 0.959 34 H 0.032 0.968 35 H 0.269 0.731 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.516 -17.780 11.524 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.393 6.393 5 C -0.135 4.135 6 C -0.075 4.075 7 C -0.151 4.151 8 C -0.062 4.062 9 C -0.080 4.080 10 C -0.165 4.165 11 H 0.150 0.850 12 S 0.042 5.958 13 C -0.114 4.114 14 C -0.556 4.556 15 H 0.104 0.896 16 C -0.121 4.121 17 N -0.524 5.524 18 Si 0.700 3.300 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.188 1.188 22 C 0.317 3.683 23 O -0.391 6.391 24 O -0.259 6.259 25 C -0.060 4.060 26 C -0.053 4.053 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.415 -17.796 10.856 24.263 hybrid contribution -0.419 2.023 1.599 2.612 sum -12.834 -15.773 12.455 23.846 Atomic orbital electron populations 1.23287 0.75924 1.03741 1.02746 1.86531 1.23588 1.32663 1.84457 1.21192 0.89099 0.81428 0.72635 1.90850 1.66770 1.36004 1.45718 1.18902 0.88817 0.94753 1.11041 1.21490 0.94034 0.97711 0.94231 1.21164 0.94140 0.98021 1.01804 1.21600 1.01735 0.91147 0.91741 1.18877 0.92720 0.92693 1.03698 1.22127 0.99305 1.00015 0.95010 0.85040 1.87203 1.59021 1.24240 1.25344 1.21645 0.99557 0.88586 1.01569 1.20355 1.28181 1.00019 1.07090 0.89616 1.24806 0.94102 0.97737 0.95419 1.69851 1.30568 1.23252 1.28741 0.86862 0.79720 0.81571 0.81855 1.19793 1.20573 1.18820 1.23353 0.78929 0.80778 0.85239 1.90687 1.66569 1.31043 1.50813 1.86491 1.49900 1.45032 1.44448 1.23293 0.94388 1.03592 0.84699 1.21084 0.93302 0.97257 0.93642 0.91825 0.91709 0.87950 0.84377 0.84573 0.83434 0.94044 0.95009 0.92056 0.91687 0.87924 0.92165 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.56 9.82 -40.51 -0.40 -3.96 16 3 C 0.51 6.32 7.90 34.61 0.27 6.60 16 4 O -0.50 -7.52 16.14 -19.24 -0.31 -7.83 16 5 C -0.13 -1.60 5.87 -104.98 -0.62 -2.21 16 6 C -0.06 -0.54 9.62 -39.17 -0.38 -0.92 16 7 C -0.13 -1.28 10.03 -39.64 -0.40 -1.68 16 8 C -0.04 -0.52 8.30 -39.49 -0.33 -0.85 16 9 C -0.08 -1.09 4.77 -104.68 -0.50 -1.59 16 10 C -0.04 -0.60 2.89 -29.03 -0.08 -0.68 16 11 H 0.13 2.11 7.85 -51.92 -0.41 1.70 16 12 S -0.19 -3.80 20.67 -107.50 -2.22 -6.02 16 13 C 0.03 0.83 4.55 36.01 0.16 0.99 16 14 C -0.52 -14.57 9.68 -34.44 -0.33 -14.90 16 15 H 0.09 2.61 7.96 -52.49 -0.42 2.19 16 16 C 0.08 2.41 5.47 -17.82 -0.10 2.32 16 17 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 18 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 22 C 0.48 8.22 6.36 36.01 0.23 8.45 16 23 O -0.50 -9.87 16.84 -18.75 -0.32 -10.19 16 24 O -0.34 -5.04 8.29 -39.25 -0.33 -5.36 16 25 C 0.03 0.39 10.56 101.05 1.07 1.46 16 26 C -0.03 -0.44 9.22 -39.17 -0.36 -0.80 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.14 1.02 7.61 -52.49 -0.40 0.62 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.15 1.82 6.83 -52.49 -0.36 1.46 16 33 H 0.04 1.00 7.20 -51.92 -0.37 0.62 16 34 H 0.03 0.78 7.43 -51.92 -0.39 0.39 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 39 H 0.14 1.83 7.53 -52.49 -0.40 1.44 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -33.61 357.31 -7.24 -40.84 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.86 Total: -1.25 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.29 Total: -2.51 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.77 Total: -25.78 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.35 Total: -27.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -2.22 Total: -6.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.61 -7.24 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.559 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds