Wall clock time and date at job start Tue Mar 31 2020 14:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34706 * 116.99912 * 2 1 4 4 O 1.21469 * 120.00048 * 0.02562 * 3 2 1 5 5 C 1.47720 * 119.99970 * 180.02562 * 3 2 1 6 6 C 1.39648 * 120.14842 * 359.97438 * 5 3 2 7 7 C 1.37925 * 119.84537 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.15386 * 0.02562 * 7 6 5 9 9 C 1.38349 * 120.30320 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.92520 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46884 * 180.02562 * 10 9 8 12 12 S 1.81395 * 109.47237 * 60.00008 * 10 9 8 13 13 C 1.81398 * 102.99873 * 175.00064 * 12 10 9 14 14 C 1.50706 * 109.46884 * 180.02562 * 13 12 10 15 15 H 1.07991 * 120.00027 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99811 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00008 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00012 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47355 * 89.99701 * 18 16 14 20 20 H 1.48499 * 109.47013 * 209.99836 * 18 16 14 21 21 H 1.48495 * 109.46909 * 329.99541 * 18 16 14 22 22 C 1.50706 * 109.46663 * 299.99981 * 10 9 8 23 23 O 1.20826 * 119.99287 * 229.99849 * 22 10 9 24 24 O 1.34228 * 120.00394 * 50.00347 * 22 10 9 25 25 C 1.45198 * 116.99985 * 179.97438 * 24 22 10 26 26 C 1.37964 * 120.14717 * 0.27319 * 9 8 7 27 27 H 1.08998 * 109.46795 * 300.00077 * 1 2 3 28 28 H 1.09002 * 109.47243 * 59.99592 * 1 2 3 29 29 H 1.09001 * 109.47260 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.07643 * 0.02562 * 6 5 3 31 31 H 1.08002 * 119.92288 * 180.02562 * 7 6 5 32 32 H 1.08000 * 119.84895 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.46932 * 299.99496 * 13 12 10 34 34 H 1.09002 * 109.47277 * 60.00463 * 13 12 10 35 35 H 0.96998 * 120.00068 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47379 * 299.99940 * 25 24 22 37 37 H 1.09001 * 109.46782 * 180.02562 * 25 24 22 38 38 H 1.09004 * 109.47085 * 60.00143 * 25 24 22 39 39 H 1.08000 * 120.07658 * 179.72627 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3024 0.1084 -0.0006 7 6 5.6794 0.1878 -0.0006 8 6 6.3044 1.4225 0.0000 9 6 5.5540 2.5848 0.0000 10 6 6.2435 3.9248 0.0011 11 1 5.4959 4.7181 0.0014 12 16 7.2816 4.0720 -1.4791 13 6 7.8948 5.7763 -1.3796 14 6 8.7877 6.0586 -2.5604 15 1 8.9686 5.2895 -3.2966 16 6 9.3738 7.2987 -2.7006 17 7 10.1534 7.5449 -3.7307 18 14 9.0614 8.6287 -1.4267 19 1 10.0873 8.5401 -0.3567 20 1 9.1365 9.9626 -2.0751 21 1 7.7122 8.4409 -0.8356 22 6 7.1041 4.0458 1.2324 23 8 7.0221 5.0270 1.9327 24 8 7.9617 3.0636 1.5510 25 6 8.7591 3.2480 2.7503 26 6 4.1759 2.5198 0.0051 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.8159 -0.8558 -0.0006 31 1 6.2712 -0.7156 -0.0010 32 1 7.3829 1.4790 -0.0005 33 1 7.0515 6.4669 -1.3891 34 1 8.4603 5.9057 -0.4568 35 1 10.5654 8.4175 -3.8296 36 1 9.3678 4.1463 2.6474 37 1 9.4083 2.3838 2.8914 38 1 8.1001 3.3524 3.6123 39 1 3.5913 3.4279 0.0096 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:48 Heat of formation + Delta-G solvation = -162.457403 kcal Electronic energy + Delta-G solvation = -24426.912130 eV Core-core repulsion = 20618.548219 eV Total energy + Delta-G solvation = -3808.363912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.89790 -41.52256 -39.93326 -37.68264 -37.52717 -35.29033 -34.62301 -32.39474 -31.58716 -29.97924 -28.59400 -28.00673 -25.19277 -24.79801 -23.33889 -22.60664 -21.67222 -19.32606 -19.25690 -18.63016 -18.28010 -18.10744 -17.50318 -17.41247 -17.02543 -16.87902 -16.39046 -15.94723 -15.45425 -15.12496 -14.95588 -14.60457 -14.58050 -14.55401 -14.45672 -14.24681 -14.01859 -13.60964 -13.17535 -13.06760 -12.79301 -12.69600 -12.43895 -12.37136 -12.15500 -12.03383 -11.87151 -11.84138 -11.83368 -11.66295 -11.01096 -10.94849 -10.09835 -9.92644 -8.78046 -8.44866 -6.54418 -0.41882 -0.13292 0.51078 1.05583 1.26548 1.28896 1.37304 1.38777 1.54555 1.63773 1.77769 2.21275 2.72587 2.87609 3.14936 3.39455 3.64630 3.78761 4.01417 4.13093 4.21158 4.28102 4.30916 4.32910 4.34682 4.40525 4.47411 4.58218 4.66106 4.68845 4.76476 4.85358 5.14939 5.16368 5.20255 5.22157 5.36782 5.39265 5.76566 5.98572 6.46238 6.49436 6.61308 7.08758 8.70259 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.003336 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.497726 B = 8391.936412 C = 9058.829144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.513 3.487 4 O -0.539 6.539 5 C -0.144 4.144 6 C -0.038 4.038 7 C -0.120 4.120 8 C -0.049 4.049 9 C -0.096 4.096 10 C -0.026 4.026 11 H 0.130 0.870 12 S -0.189 6.189 13 C 0.031 3.969 14 C -0.527 4.527 15 H 0.049 0.951 16 C 0.032 3.968 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.256 1.256 22 C 0.479 3.521 23 O -0.533 6.533 24 O -0.339 6.339 25 C 0.025 3.975 26 C -0.042 4.042 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.139 0.861 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.146 0.854 33 H 0.041 0.959 34 H 0.028 0.972 35 H 0.275 0.725 36 H 0.052 0.948 37 H 0.142 0.858 38 H 0.068 0.932 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.414 -20.242 13.198 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.360 3.640 4 O -0.431 6.431 5 C -0.146 4.146 6 C -0.056 4.056 7 C -0.137 4.137 8 C -0.069 4.069 9 C -0.097 4.097 10 C -0.155 4.155 11 H 0.148 0.852 12 S 0.043 5.957 13 C -0.117 4.117 14 C -0.566 4.566 15 H 0.067 0.933 16 C -0.169 4.169 17 N -0.568 5.568 18 Si 0.760 3.240 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.180 1.180 22 C 0.319 3.681 23 O -0.424 6.424 24 O -0.254 6.254 25 C -0.068 4.068 26 C -0.062 4.062 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.187 0.813 31 H 0.192 0.808 32 H 0.163 0.837 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.160 0.840 38 H 0.087 0.913 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.299 -20.294 12.522 27.304 hybrid contribution -0.206 2.549 1.102 2.784 sum -13.505 -17.745 13.623 26.132 Atomic orbital electron populations 1.23616 0.74179 1.06077 1.02561 1.86515 1.25244 1.31117 1.83770 1.21303 0.89274 0.81627 0.71805 1.90836 1.67504 1.37248 1.47490 1.19004 0.88963 0.95064 1.11521 1.21857 0.94016 0.98076 0.91663 1.21537 0.94326 0.98178 0.99664 1.21719 1.01662 0.91642 0.91857 1.18712 0.92937 0.91774 1.06292 1.22096 0.98528 1.02064 0.92782 0.85184 1.87007 1.59901 1.20583 1.28189 1.21392 0.98842 0.91938 0.99507 1.20521 1.28974 0.99437 1.07630 0.93293 1.25677 0.93712 1.00162 0.97391 1.69972 1.31830 1.24278 1.30726 0.85854 0.80020 0.78790 0.79339 1.18898 1.19389 1.18041 1.23421 0.78946 0.80662 0.85057 1.90667 1.67492 1.32214 1.51986 1.86485 1.49360 1.43891 1.45711 1.23661 0.94493 1.04955 0.83666 1.21031 0.93025 0.97843 0.94331 0.91946 0.92079 0.84328 0.81251 0.80816 0.83676 0.94125 0.95369 0.91590 0.92957 0.83968 0.91284 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.15 9.82 -56.15 -0.55 -6.70 16 3 C 0.51 12.03 7.90 70.33 0.56 12.58 16 4 O -0.54 -16.02 16.14 19.94 0.32 -15.70 16 5 C -0.14 -3.19 5.87 -20.10 -0.12 -3.31 16 6 C -0.04 -0.59 9.62 22.54 0.22 -0.37 16 7 C -0.12 -1.83 10.03 22.23 0.22 -1.61 16 8 C -0.05 -1.10 8.30 22.33 0.19 -0.91 16 9 C -0.10 -2.59 4.77 -19.90 -0.09 -2.69 16 10 C -0.03 -0.86 2.89 29.10 0.08 -0.78 16 11 H 0.13 4.28 7.85 -2.39 -0.02 4.26 16 12 S -0.19 -7.68 20.67 -56.49 -1.17 -8.84 16 13 C 0.03 1.54 4.55 71.24 0.32 1.86 16 14 C -0.53 -30.63 9.68 25.60 0.25 -30.38 16 15 H 0.05 3.13 7.96 -2.91 -0.02 3.11 16 16 C 0.03 1.86 5.47 84.65 0.46 2.33 16 17 N -0.93 -57.01 13.96 21.45 0.30 -56.71 16 18 Si 0.94 44.36 27.47 68.60 1.88 46.25 16 19 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -11.74 6.54 99.48 0.65 -11.09 16 22 C 0.48 16.33 6.36 71.24 0.45 16.78 16 23 O -0.53 -20.94 16.84 21.96 0.37 -20.57 16 24 O -0.34 -9.56 8.29 -51.40 -0.43 -9.98 16 25 C 0.03 0.53 10.56 113.37 1.20 1.73 16 26 C -0.04 -1.10 9.22 22.54 0.21 -0.89 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.17 1.63 7.61 -2.91 -0.02 1.61 16 31 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.15 3.29 6.83 -2.91 -0.02 3.27 16 33 H 0.04 1.98 7.20 -2.39 -0.02 1.96 16 34 H 0.03 1.39 7.43 -2.39 -0.02 1.37 16 35 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 37 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 1.35 8.13 -2.38 -0.02 1.33 16 39 H 0.13 3.54 7.53 -2.91 -0.02 3.52 16 Total: -1.00 -75.42 357.31 6.89 -68.53 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.01 Total: 7.84 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.14 Total: -4.11 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.30 Total: -56.71 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -0.29 Total: -52.95 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.17 Total: -8.84 kcal Total: -75.42 6.89 -68.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.926 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds