Wall clock time and date at job start Tue Mar 31 2020 14:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99879 * 2 1 4 4 C 1.53007 * 109.47133 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47093 * 65.00012 * 4 3 2 6 6 C 1.36933 * 119.99638 * 90.00046 * 5 4 3 7 7 H 1.07999 * 120.00227 * 214.06894 * 6 5 4 8 8 C 1.38813 * 120.00415 * 34.07892 * 6 5 4 9 9 N 1.31625 * 119.99755 * 22.89553 * 8 6 5 10 10 Si 1.86794 * 120.00456 * 202.90068 * 8 6 5 11 11 H 1.48511 * 109.47112 * 59.99470 * 10 8 6 12 12 H 1.48499 * 109.47432 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47257 * 299.99773 * 10 8 6 14 14 C 1.46501 * 120.00363 * 270.27659 * 5 4 3 15 15 C 1.50699 * 109.46917 * 267.50237 * 14 5 4 16 16 C 1.33634 * 125.86337 * 90.00024 * 15 14 5 17 17 N 1.31387 * 115.88127 * 179.97438 * 16 15 14 18 18 C 1.30474 * 116.95441 * 359.97438 * 17 16 15 19 19 C 1.47143 * 125.48656 * 180.02562 * 18 17 16 20 20 C 1.35096 * 125.28178 * 359.69568 * 19 18 17 21 21 C 1.37813 * 114.66870 * 179.79184 * 20 19 18 22 22 C 1.33712 * 115.09380 * 0.49954 * 21 20 19 23 23 S 1.75851 * 109.78547 * 359.73091 * 22 21 20 24 24 S 1.76184 * 109.03143 * 359.75644 * 18 17 16 25 25 H 1.09004 * 109.46778 * 299.98972 * 1 2 3 26 26 H 1.08992 * 109.47396 * 59.99488 * 1 2 3 27 27 H 1.08999 * 109.46921 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47114 * 60.00955 * 3 2 1 29 29 H 1.09000 * 109.47385 * 300.00375 * 3 2 1 30 30 H 1.09001 * 109.46741 * 305.00144 * 4 3 2 31 31 H 1.08998 * 109.46970 * 185.00534 * 4 3 2 32 32 H 0.96998 * 119.99824 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.46923 * 27.49778 * 14 5 4 34 34 H 1.09000 * 109.47129 * 147.50091 * 14 5 4 35 35 H 1.07999 * 122.05704 * 359.97438 * 16 15 14 36 36 H 1.07991 * 122.66650 * 359.97438 * 20 19 18 37 37 H 1.07994 * 122.45217 * 180.23655 * 21 20 19 38 38 H 1.07998 * 125.10309 * 179.74975 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2660 1.3462 -2.3388 7 1 4.0562 0.9859 -3.3351 8 6 4.8303 2.6018 -2.1595 9 7 5.4923 2.8740 -1.0549 10 14 4.6500 3.9050 -3.4855 11 1 3.2093 4.1877 -3.7092 12 1 5.3369 5.1488 -3.0539 13 1 5.2599 3.4146 -4.7477 14 6 4.0994 -0.8923 -1.3447 15 6 5.5099 -1.2991 -1.0039 16 6 5.9649 -1.5999 0.2161 17 7 7.2343 -1.9309 0.2893 18 6 7.9106 -1.9316 -0.8265 19 6 9.3360 -2.2708 -0.9611 20 6 10.1530 -2.6256 0.0546 21 6 11.4501 -2.9020 -0.3202 22 6 11.7040 -2.7672 -1.6260 23 16 10.2426 -2.2700 -2.4684 24 16 6.8404 -1.4684 -2.1473 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8464 0.8901 29 1 1.6885 1.8465 -0.8899 30 1 3.8514 0.5683 0.8409 31 1 3.9785 2.1766 0.0890 32 1 5.8863 3.7515 -0.9294 33 1 3.4071 -1.3607 -0.6450 34 1 3.8636 -1.2137 -2.3592 35 1 5.3283 -1.5726 1.0881 36 1 9.8157 -2.6906 1.0785 37 1 12.2070 -3.2013 0.3895 38 1 12.6626 -2.9383 -2.0932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453595983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:30 Heat of formation + Delta-G solvation = 40.534406 kcal Electronic energy + Delta-G solvation = -22257.370589 eV Core-core repulsion = 18932.854685 eV Total energy + Delta-G solvation = -3324.515904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41494 -38.95721 -38.50469 -37.19991 -33.94295 -32.56085 -31.10646 -29.64690 -27.32682 -27.08321 -26.10099 -24.83040 -23.96858 -22.30810 -21.41769 -19.75233 -18.98343 -18.56563 -17.69259 -17.25736 -16.82127 -16.74153 -16.43033 -15.83132 -15.73074 -15.56245 -15.17366 -15.02931 -14.45181 -14.36580 -13.78391 -13.65106 -13.40801 -13.23453 -13.15449 -12.89186 -12.86577 -12.57294 -12.52291 -12.18381 -11.99495 -11.86369 -11.79515 -11.63862 -10.70316 -10.63053 -10.55726 -10.42091 -10.08873 -9.51899 -8.98913 -8.69793 -7.91232 -5.45075 -0.75840 0.31173 0.41818 0.58334 0.75222 1.15153 1.44966 1.47140 1.53263 1.71430 2.16693 2.47838 3.10120 3.20270 3.25007 3.67091 4.09505 4.21943 4.28581 4.40495 4.47467 4.51034 4.52409 4.62433 4.68015 4.68269 4.75311 4.87045 4.98982 5.03864 5.12093 5.20341 5.25484 5.36471 5.48651 5.57678 5.68269 6.36184 6.45072 6.77392 7.07018 7.73469 8.27857 9.05726 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014128 B = 0.003949 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.340898 B = 7088.412402 C = 8385.189145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.060 3.940 4 C 0.147 3.853 5 N -0.571 5.571 6 C -0.261 4.261 7 H 0.059 0.941 8 C -0.028 4.028 9 N -0.908 5.908 10 Si 0.953 3.047 11 H -0.276 1.276 12 H -0.293 1.293 13 H -0.277 1.277 14 C 0.216 3.784 15 C -0.180 4.180 16 C 0.003 3.997 17 N -0.471 5.471 18 C 0.094 3.906 19 C -0.154 4.154 20 C -0.092 4.092 21 C -0.140 4.140 22 C -0.185 4.185 23 S 0.118 5.882 24 S 0.080 5.920 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.087 0.913 32 H 0.253 0.747 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.176 0.824 36 H 0.145 0.855 37 H 0.179 0.821 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.887 -10.206 0.515 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.019 4.019 4 C 0.021 3.979 5 N -0.288 5.288 6 C -0.391 4.391 7 H 0.077 0.923 8 C -0.227 4.227 9 N -0.551 5.551 10 Si 0.781 3.219 11 H -0.201 1.201 12 H -0.219 1.219 13 H -0.203 1.203 14 C 0.087 3.913 15 C -0.305 4.305 16 C -0.149 4.149 17 N -0.186 5.186 18 C -0.181 4.181 19 C -0.275 4.275 20 C -0.128 4.128 21 C -0.169 4.169 22 C -0.322 4.322 23 S 0.381 5.619 24 S 0.336 5.664 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.115 0.885 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.193 0.807 36 H 0.162 0.838 37 H 0.196 0.804 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.016 -9.882 -1.581 11.195 hybrid contribution -0.566 1.146 1.692 2.121 sum 4.450 -8.736 0.111 9.805 Atomic orbital electron populations 1.22837 0.80810 1.03265 0.99967 1.87858 1.20415 1.28643 1.95353 1.23117 0.96126 0.84081 0.98558 1.21054 0.89856 1.00396 0.86644 1.44139 1.73812 1.00241 1.10653 1.19243 1.34544 0.97829 0.87510 0.92293 1.25730 0.96289 1.01706 0.98955 1.70089 1.34335 1.21839 1.28824 0.85577 0.78005 0.78792 0.79572 1.20138 1.21916 1.20303 1.19698 0.86123 0.85260 1.00205 1.27552 1.03496 1.03850 0.95573 1.21460 0.90792 1.04861 0.97768 1.66543 1.07107 1.17299 1.27604 1.24761 0.96562 1.05567 0.91225 1.21927 0.92824 1.13449 0.99302 1.20676 0.93333 0.98980 0.99808 1.20350 0.96310 1.03634 0.96624 1.26280 1.02013 1.06510 0.97380 1.84332 1.02446 1.67096 1.08038 1.84691 1.03915 1.63657 1.14168 0.93502 0.94625 0.88518 0.93151 0.94973 0.94911 0.89604 0.93720 0.89390 0.92757 0.80702 0.83776 0.80375 0.77629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -14.38 9.54 -148.98 -1.42 -15.81 16 3 C 0.06 2.29 6.28 71.98 0.45 2.75 16 4 C 0.15 6.67 5.69 86.38 0.49 7.16 16 5 N -0.57 -27.26 2.40 -706.34 -1.70 -28.95 16 6 C -0.26 -13.60 9.49 84.03 0.80 -12.80 16 7 H 0.06 3.10 7.93 -2.91 -0.02 3.08 16 8 C -0.03 -1.50 4.95 84.86 0.42 -1.08 16 9 N -0.91 -51.15 11.32 21.65 0.25 -50.90 16 10 Si 0.95 43.15 29.61 68.60 2.03 45.18 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 14 C 0.22 9.09 5.99 85.63 0.51 9.61 16 15 C -0.18 -7.62 6.16 24.64 0.15 -7.47 16 16 C 0.00 0.12 11.14 83.71 0.93 1.05 16 17 N -0.47 -19.60 10.50 -190.38 -2.00 -21.60 16 18 C 0.09 3.72 7.45 87.23 0.65 4.37 16 19 C -0.15 -5.08 6.42 23.89 0.15 -4.93 16 20 C -0.09 -2.53 10.03 21.44 0.22 -2.32 16 21 C -0.14 -2.75 10.16 21.14 0.21 -2.54 16 22 C -0.18 -3.39 11.23 66.79 0.75 -2.64 16 23 S 0.12 3.07 23.13 -56.49 -1.31 1.76 16 24 S 0.08 3.27 23.24 -56.49 -1.31 1.96 16 25 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 31 H 0.09 4.46 5.32 -2.39 -0.01 4.44 16 32 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.09 3.45 7.14 -2.38 -0.02 3.43 16 34 H 0.05 2.25 8.06 -2.39 -0.02 2.23 16 35 H 0.18 6.63 8.06 -2.91 -0.02 6.60 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.21 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -63.86 354.82 2.60 -61.26 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 1.07 Total: 13.97 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 6.99 Total: -6.87 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -3.45 Total: -101.45 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -1.42 Total: -15.81 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -2.62 Total: 3.72 kcal Total: -63.86 2.60 -61.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453595983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.798 kcal (2) G-P(sol) polarization free energy of solvation -63.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds