Wall clock time and date at job start Tue Mar 31 2020 14:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00375 * 2 1 4 4 C 1.53002 * 109.47011 * 184.93017 * 3 2 1 5 5 N 1.46497 * 109.47014 * 64.85612 * 4 3 2 6 6 C 1.36936 * 119.99975 * 84.63425 * 5 4 3 7 7 H 1.07998 * 120.00137 * 353.40675 * 6 5 4 8 8 C 1.38819 * 119.99783 * 173.40794 * 6 5 4 9 9 N 1.31624 * 119.99873 * 4.58831 * 8 6 5 10 10 Si 1.86795 * 120.00037 * 184.59516 * 8 6 5 11 11 H 1.48497 * 109.47178 * 59.99499 * 10 8 6 12 12 H 1.48500 * 109.47259 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46926 * 299.99796 * 10 8 6 14 14 C 1.46499 * 119.99788 * 264.62853 * 5 4 3 15 15 C 1.50702 * 109.47140 * 265.26710 * 14 5 4 16 16 C 1.33520 * 122.07200 * 93.79723 * 15 14 5 17 17 S 1.76240 * 108.26854 * 179.91048 * 16 15 14 18 18 C 1.76171 * 89.85315 * 0.28924 * 17 16 15 19 19 C 1.47799 * 125.47705 * 179.86653 * 18 17 16 20 20 C 1.39543 * 122.82052 * 4.81237 * 19 18 17 21 21 C 1.32958 * 114.92397 * 179.82920 * 20 19 18 22 22 S 1.75801 * 110.00444 * 0.41989 * 21 20 19 23 23 C 1.34841 * 122.81487 * 185.10096 * 19 18 17 24 24 N 1.30269 * 109.04586 * 359.83304 * 18 17 16 25 25 H 1.09003 * 109.47065 * 304.93565 * 1 2 3 26 26 H 1.09004 * 109.47108 * 64.93245 * 1 2 3 27 27 H 1.08996 * 109.47480 * 184.93586 * 1 2 3 28 28 H 1.08996 * 109.46884 * 64.92499 * 3 2 1 29 29 H 1.09003 * 109.46713 * 304.92563 * 3 2 1 30 30 H 1.09000 * 109.46623 * 304.85496 * 4 3 2 31 31 H 1.09001 * 109.46719 * 184.85845 * 4 3 2 32 32 H 0.96991 * 119.99527 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.47294 * 25.26224 * 14 5 4 34 34 H 1.09000 * 109.47375 * 145.26650 * 14 5 4 35 35 H 1.08007 * 125.86416 * 359.97438 * 16 15 14 36 36 H 1.08001 * 122.53761 * 0.02562 * 20 19 18 37 37 H 1.07999 * 125.00152 * 180.17846 * 21 20 19 38 38 H 1.08000 * 125.24304 * 359.93727 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1867 -0.1240 5 7 3.8707 0.6077 -1.4260 6 6 3.9681 1.4133 -2.5291 7 1 3.6914 2.4551 -2.4631 8 6 4.4225 0.8907 -3.7322 9 7 4.6738 -0.3970 -3.8373 10 14 4.6777 2.0151 -5.2019 11 1 5.6809 3.0555 -4.8609 12 1 5.1647 1.2180 -6.3563 13 1 3.3907 2.6657 -5.5567 14 6 4.1066 -0.8330 -1.5480 15 6 5.5833 -1.1115 -1.4353 16 6 6.1585 -1.4279 -0.2726 17 16 7.8796 -1.6779 -0.5575 18 6 7.6455 -1.3116 -2.2648 19 6 8.7071 -1.3006 -3.2931 20 6 10.0225 -1.6824 -3.0264 21 6 10.8473 -1.6156 -4.0671 22 16 9.9822 -1.0371 -5.4839 23 6 8.4870 -0.9153 -4.5665 24 7 6.3863 -1.0526 -2.4752 25 1 -0.3633 0.5885 0.8425 26 1 -0.3633 0.4354 -0.9309 27 1 -0.3634 -1.0238 0.0884 28 1 1.7602 1.8145 0.9308 29 1 1.6206 1.8766 -0.8426 30 1 3.9107 0.5438 0.6700 31 1 3.9806 2.1757 -0.0374 32 1 4.9909 -0.7622 -4.6780 33 1 3.5764 -1.3566 -0.7524 34 1 3.7442 -1.1799 -2.5156 35 1 5.6551 -1.5165 0.6789 36 1 10.3454 -2.0105 -2.0494 37 1 11.8955 -1.8747 -4.0444 38 1 7.5384 -0.5835 -4.9621 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453597688.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:40 Heat of formation + Delta-G solvation = 97.725347 kcal Electronic energy + Delta-G solvation = -23020.869681 eV Core-core repulsion = 19698.833762 eV Total energy + Delta-G solvation = -3322.035919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -38.83558 -37.53745 -37.16625 -35.10856 -31.51681 -30.75648 -28.86684 -28.00646 -26.05066 -25.62239 -25.15842 -23.25748 -21.98581 -20.46119 -18.88509 -18.30565 -17.68431 -16.75704 -16.26927 -15.67359 -15.47934 -15.17668 -14.65063 -14.33108 -13.78641 -13.57996 -13.28202 -13.12462 -12.82260 -12.70455 -12.36867 -12.31412 -11.98071 -11.66249 -11.48763 -11.39360 -10.84339 -10.82068 -10.69352 -10.63646 -10.48021 -10.01058 -9.91088 -9.66650 -9.06295 -9.03060 -8.63354 -8.52212 -8.32738 -8.18127 -7.35564 -6.71705 -5.36526 -2.94615 0.99180 1.66745 1.79558 2.02670 2.38367 2.65595 3.06177 3.43175 3.46719 3.49640 4.22976 4.43593 4.58047 4.76369 5.26803 5.48732 5.53207 5.55901 5.63152 5.74640 5.87621 5.96410 5.98063 6.02942 6.11528 6.15595 6.19887 6.27694 6.49852 6.51462 6.59790 6.63655 6.76770 7.07929 7.38938 7.77799 7.82151 7.96237 8.55619 9.12089 9.37560 9.97230 10.39529 11.42895 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.004685 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.235796 B = 5975.592347 C = 7471.885759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.377 6.377 3 C 0.043 3.957 4 C 0.151 3.849 5 N -0.581 5.581 6 C -0.268 4.268 7 H 0.068 0.932 8 C 0.010 3.990 9 N -0.854 5.854 10 Si 0.896 3.104 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.288 1.288 14 C 0.215 3.785 15 C 0.114 3.886 16 C -0.262 4.262 17 S -0.041 6.041 18 C 0.103 3.897 19 C -0.031 4.031 20 C -0.116 4.116 21 C -0.220 4.220 22 S 0.092 5.908 23 C -0.153 4.153 24 N -0.336 5.336 25 H 0.028 0.972 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.028 0.972 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.252 0.748 33 H 0.027 0.973 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.274 -2.831 3.496 6.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.037 4.037 4 C 0.023 3.977 5 N -0.300 5.300 6 C -0.397 4.397 7 H 0.086 0.914 8 C -0.189 4.189 9 N -0.498 5.498 10 Si 0.727 3.273 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.215 1.215 14 C 0.086 3.914 15 C -0.021 4.021 16 C -0.401 4.401 17 S 0.212 5.788 18 C -0.177 4.177 19 C -0.047 4.047 20 C -0.147 4.147 21 C -0.355 4.355 22 S 0.354 5.646 23 C -0.293 4.293 24 N -0.047 5.047 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.500 -2.938 1.964 7.399 hybrid contribution -1.125 0.947 0.889 1.719 sum 5.375 -1.991 2.853 6.402 Atomic orbital electron populations 1.22613 0.83000 1.01530 0.99107 1.87937 1.17961 1.28543 1.95121 1.23445 0.98172 0.84158 0.97896 1.20797 0.90298 0.97724 0.88913 1.43893 1.79443 1.03564 1.03102 1.19047 1.39960 0.92504 0.88175 0.91388 1.24741 1.00541 0.96009 0.97649 1.69749 1.46934 1.09212 1.23946 0.86476 0.77790 0.80070 0.82955 1.21552 1.21613 1.21499 1.20377 0.84120 0.83304 1.03589 1.21556 1.01523 0.94185 0.84795 1.26727 0.93799 1.16063 1.03530 1.84357 1.11590 1.70577 1.12287 1.25961 0.94430 1.05594 0.91675 1.16889 0.91551 1.04425 0.91804 1.20063 0.91948 1.02572 1.00155 1.25270 1.03642 1.10434 0.96158 1.84129 1.01539 1.65089 1.13802 1.26021 1.01796 1.05363 0.96155 1.67183 0.97864 1.08986 1.30643 0.95316 0.94581 0.90589 0.95417 0.93425 0.93511 0.92631 0.93598 0.95468 0.84146 0.82259 0.84242 0.81826 0.80440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.38 -7.12 10.26 -35.23 -0.36 -7.49 16 3 C 0.04 0.78 6.25 37.16 0.23 1.01 16 4 C 0.15 3.05 6.04 -4.04 -0.02 3.02 16 5 N -0.58 -13.98 2.48 -174.61 -0.43 -14.41 16 6 C -0.27 -7.05 9.79 -15.06 -0.15 -7.20 16 7 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 8 C 0.01 0.26 5.34 -17.43 -0.09 0.17 16 9 N -0.85 -22.59 6.30 55.49 0.35 -22.24 16 10 Si 0.90 21.50 29.56 -169.99 -5.02 16.48 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.21 5.14 5.31 -5.19 -0.03 5.11 16 15 C 0.11 2.63 6.08 -84.38 -0.51 2.12 16 16 C -0.26 -5.28 11.05 29.08 0.32 -4.96 16 17 S -0.04 -0.75 22.84 -107.50 -2.46 -3.20 16 18 C 0.10 2.15 7.40 -14.31 -0.11 2.05 16 19 C -0.03 -0.58 5.79 -106.71 -0.62 -1.20 16 20 C -0.12 -1.74 9.76 -40.92 -0.40 -2.14 16 21 C -0.22 -2.82 11.18 28.90 0.32 -2.50 16 22 S 0.09 1.28 23.32 -107.50 -2.51 -1.23 16 23 C -0.15 -2.76 10.93 29.53 0.32 -2.44 16 24 N -0.34 -7.95 7.25 -7.56 -0.05 -8.01 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 31 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.03 0.62 7.69 -51.92 -0.40 0.22 16 34 H 0.14 3.78 5.41 -52.49 -0.28 3.50 16 35 H 0.16 2.85 8.06 -52.48 -0.42 2.43 16 36 H 0.14 1.88 7.77 -52.49 -0.41 1.47 16 37 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.18 3.58 8.06 -52.49 -0.42 3.15 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -28.37 347.27 -9.72 -38.09 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.86 Total: 2.10 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 0.38 Total: -5.33 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.14 Total: -44.66 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.36 Total: -7.49 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -4.96 Total: -4.43 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.37 -9.72 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453597688.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.820 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds