Wall clock time and date at job start Tue Mar 31 2020 14:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00375 * 2 1 4 4 C 1.53002 * 109.47011 * 184.93017 * 3 2 1 5 5 N 1.46497 * 109.47014 * 64.85612 * 4 3 2 6 6 C 1.36936 * 119.99975 * 84.63425 * 5 4 3 7 7 H 1.07998 * 120.00137 * 353.40675 * 6 5 4 8 8 C 1.38819 * 119.99783 * 173.40794 * 6 5 4 9 9 N 1.31624 * 119.99873 * 4.58831 * 8 6 5 10 10 Si 1.86795 * 120.00037 * 184.59516 * 8 6 5 11 11 H 1.48497 * 109.47178 * 59.99499 * 10 8 6 12 12 H 1.48500 * 109.47259 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46926 * 299.99796 * 10 8 6 14 14 C 1.46499 * 119.99788 * 264.62853 * 5 4 3 15 15 C 1.50702 * 109.47140 * 265.26710 * 14 5 4 16 16 C 1.33520 * 122.07200 * 93.79723 * 15 14 5 17 17 S 1.76240 * 108.26854 * 179.91048 * 16 15 14 18 18 C 1.76171 * 89.85315 * 0.28924 * 17 16 15 19 19 C 1.47799 * 125.47705 * 179.86653 * 18 17 16 20 20 C 1.39543 * 122.82052 * 4.81237 * 19 18 17 21 21 C 1.32958 * 114.92397 * 179.82920 * 20 19 18 22 22 S 1.75801 * 110.00444 * 0.41989 * 21 20 19 23 23 C 1.34841 * 122.81487 * 185.10096 * 19 18 17 24 24 N 1.30269 * 109.04586 * 359.83304 * 18 17 16 25 25 H 1.09003 * 109.47065 * 304.93565 * 1 2 3 26 26 H 1.09004 * 109.47108 * 64.93245 * 1 2 3 27 27 H 1.08996 * 109.47480 * 184.93586 * 1 2 3 28 28 H 1.08996 * 109.46884 * 64.92499 * 3 2 1 29 29 H 1.09003 * 109.46713 * 304.92563 * 3 2 1 30 30 H 1.09000 * 109.46623 * 304.85496 * 4 3 2 31 31 H 1.09001 * 109.46719 * 184.85845 * 4 3 2 32 32 H 0.96991 * 119.99527 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.47294 * 25.26224 * 14 5 4 34 34 H 1.09000 * 109.47375 * 145.26650 * 14 5 4 35 35 H 1.08007 * 125.86416 * 359.97438 * 16 15 14 36 36 H 1.08001 * 122.53761 * 0.02562 * 20 19 18 37 37 H 1.07999 * 125.00152 * 180.17846 * 21 20 19 38 38 H 1.08000 * 125.24304 * 359.93727 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1867 -0.1240 5 7 3.8707 0.6077 -1.4260 6 6 3.9681 1.4133 -2.5291 7 1 3.6914 2.4551 -2.4631 8 6 4.4225 0.8907 -3.7322 9 7 4.6738 -0.3970 -3.8373 10 14 4.6777 2.0151 -5.2019 11 1 5.6809 3.0555 -4.8609 12 1 5.1647 1.2180 -6.3563 13 1 3.3907 2.6657 -5.5567 14 6 4.1066 -0.8330 -1.5480 15 6 5.5833 -1.1115 -1.4353 16 6 6.1585 -1.4279 -0.2726 17 16 7.8796 -1.6779 -0.5575 18 6 7.6455 -1.3116 -2.2648 19 6 8.7071 -1.3006 -3.2931 20 6 10.0225 -1.6824 -3.0264 21 6 10.8473 -1.6156 -4.0671 22 16 9.9822 -1.0371 -5.4839 23 6 8.4870 -0.9153 -4.5665 24 7 6.3863 -1.0526 -2.4752 25 1 -0.3633 0.5885 0.8425 26 1 -0.3633 0.4354 -0.9309 27 1 -0.3634 -1.0238 0.0884 28 1 1.7602 1.8145 0.9308 29 1 1.6206 1.8766 -0.8426 30 1 3.9107 0.5438 0.6700 31 1 3.9806 2.1757 -0.0374 32 1 4.9909 -0.7622 -4.6780 33 1 3.5764 -1.3566 -0.7524 34 1 3.7442 -1.1799 -2.5156 35 1 5.6551 -1.5165 0.6789 36 1 10.3454 -2.0105 -2.0494 37 1 11.8955 -1.8747 -4.0444 38 1 7.5384 -0.5835 -4.9621 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453597688.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:40 Heat of formation + Delta-G solvation = 82.535729 kcal Electronic energy + Delta-G solvation = -23021.528352 eV Core-core repulsion = 19698.833762 eV Total energy + Delta-G solvation = -3322.694590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.41766 -38.92901 -38.51192 -36.82687 -33.37962 -32.22604 -30.28797 -29.56920 -27.74161 -27.03497 -26.60662 -24.91312 -23.37191 -22.13982 -20.29329 -19.80653 -19.08310 -18.51357 -17.70928 -17.15625 -16.98112 -16.54943 -16.33670 -15.79190 -15.36679 -15.24927 -14.89207 -14.66876 -14.25640 -14.05193 -13.72230 -13.68051 -13.27895 -13.15297 -13.06414 -12.95224 -12.74752 -12.50898 -12.26609 -12.14246 -11.88452 -11.81544 -11.71885 -11.50665 -10.55976 -10.43439 -10.40600 -9.97075 -9.76404 -9.62389 -8.81377 -8.54399 -7.33469 -4.92896 -0.40960 0.34942 0.53139 0.77199 0.98518 1.12186 1.46966 1.48565 1.52274 1.70907 2.56971 2.66336 3.11809 3.35762 3.62890 3.89932 4.09836 4.38326 4.40821 4.50789 4.54542 4.54785 4.60148 4.65830 4.69219 4.69620 4.85634 4.92437 4.96688 5.02397 5.18837 5.23156 5.31792 5.41665 5.69381 5.76510 6.01056 6.47755 6.60733 7.38254 7.54335 8.07661 8.47236 9.40372 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.004685 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.235796 B = 5975.592347 C = 7471.885759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.405 6.405 3 C 0.052 3.948 4 C 0.147 3.853 5 N -0.594 5.594 6 C -0.282 4.282 7 H 0.062 0.938 8 C -0.026 4.026 9 N -0.854 5.854 10 Si 0.940 3.060 11 H -0.295 1.295 12 H -0.294 1.294 13 H -0.286 1.286 14 C 0.226 3.774 15 C 0.085 3.915 16 C -0.266 4.266 17 S 0.035 5.965 18 C 0.081 3.919 19 C -0.047 4.047 20 C -0.135 4.135 21 C -0.193 4.193 22 S 0.143 5.857 23 C -0.192 4.192 24 N -0.380 5.380 25 H 0.053 0.947 26 H 0.029 0.971 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.029 0.971 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.240 0.760 33 H 0.032 0.968 34 H 0.106 0.894 35 H 0.181 0.819 36 H 0.157 0.843 37 H 0.208 0.792 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.361 -3.222 4.704 9.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C -0.027 4.027 4 C 0.021 3.979 5 N -0.315 5.315 6 C -0.412 4.412 7 H 0.080 0.920 8 C -0.225 4.225 9 N -0.498 5.498 10 Si 0.771 3.229 11 H -0.222 1.222 12 H -0.220 1.220 13 H -0.213 1.213 14 C 0.097 3.903 15 C -0.050 4.050 16 C -0.405 4.405 17 S 0.288 5.712 18 C -0.198 4.198 19 C -0.064 4.064 20 C -0.165 4.165 21 C -0.327 4.327 22 S 0.406 5.594 23 C -0.333 4.333 24 N -0.092 5.092 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.123 0.877 35 H 0.198 0.802 36 H 0.174 0.826 37 H 0.225 0.775 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.584 -3.333 3.191 9.745 hybrid contribution -1.698 1.006 0.531 2.044 sum 6.886 -2.326 3.722 8.166 Atomic orbital electron populations 1.22801 0.80833 1.03115 0.99855 1.87883 1.20387 1.28828 1.95329 1.23232 0.96510 0.84159 0.98779 1.20944 0.91813 0.97719 0.87450 1.43961 1.80213 1.03409 1.03876 1.19142 1.40227 0.92531 0.89276 0.92003 1.25225 1.01121 0.96956 0.99208 1.70010 1.46853 1.09634 1.23267 0.85789 0.77260 0.78644 0.81162 1.22238 1.22000 1.21304 1.19957 0.85282 0.83407 1.01636 1.21416 1.01202 0.96395 0.85946 1.26979 0.95590 1.14485 1.03487 1.83917 1.08908 1.68997 1.09353 1.26423 0.94370 1.04992 0.93973 1.17202 0.92551 1.05225 0.91405 1.20111 0.90562 1.04080 1.01757 1.25806 1.05116 1.07229 0.94594 1.83920 0.98551 1.63854 1.13103 1.25914 1.02876 1.07027 0.97434 1.67093 0.99300 1.10834 1.31927 0.92808 0.95203 0.88988 0.92021 0.95264 0.92561 0.92455 0.94787 0.94966 0.87712 0.80154 0.82598 0.77489 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.41 -15.06 10.26 -148.98 -1.53 -16.59 16 3 C 0.05 1.87 6.25 71.98 0.45 2.32 16 4 C 0.15 5.95 6.04 86.38 0.52 6.47 16 5 N -0.59 -29.35 2.48 -706.33 -1.75 -31.10 16 6 C -0.28 -15.37 9.79 84.04 0.82 -14.55 16 7 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16 8 C -0.03 -1.46 5.34 84.86 0.45 -1.00 16 9 N -0.85 -47.57 6.30 21.65 0.14 -47.44 16 10 Si 0.94 45.95 29.56 68.60 2.03 47.98 16 11 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 12 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 C 0.23 11.18 5.31 85.63 0.45 11.64 16 15 C 0.09 4.02 6.08 41.54 0.25 4.27 16 16 C -0.27 -10.53 11.05 66.75 0.74 -9.79 16 17 S 0.03 1.21 22.84 -56.49 -1.29 -0.08 16 18 C 0.08 3.42 7.40 87.46 0.65 4.07 16 19 C -0.05 -1.74 5.79 -21.21 -0.12 -1.86 16 20 C -0.13 -3.70 9.76 21.41 0.21 -3.49 16 21 C -0.19 -4.20 11.18 66.65 0.75 -3.45 16 22 S 0.14 3.68 23.32 -56.49 -1.32 2.36 16 23 C -0.19 -7.06 10.93 67.04 0.73 -6.33 16 24 N -0.38 -18.60 7.25 -177.84 -1.29 -19.89 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 2.13 8.03 -2.39 -0.02 2.11 16 31 H 0.06 2.25 8.08 -2.39 -0.02 2.23 16 32 H 0.24 13.54 8.31 -92.71 -0.77 12.77 16 33 H 0.03 1.51 7.69 -2.38 -0.02 1.49 16 34 H 0.11 5.96 5.41 -3.49 -0.02 5.94 16 35 H 0.18 6.16 8.06 -2.91 -0.02 6.14 16 36 H 0.16 3.68 7.77 -2.91 -0.02 3.66 16 37 H 0.21 2.70 8.06 -2.91 -0.02 2.67 16 38 H 0.14 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -64.43 347.27 3.20 -61.23 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.06 Total: 13.14 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 7.15 Total: -9.62 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -2.90 Total: -98.43 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -1.53 Total: -16.59 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -2.61 Total: 2.28 kcal Total: -64.43 3.20 -61.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453597688.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.767 kcal (2) G-P(sol) polarization free energy of solvation -64.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds