Wall clock time and date at job start Tue Mar 31 2020 14:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99870 * 2 1 4 4 C 1.53007 * 109.46838 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47143 * 65.00159 * 4 3 2 6 6 C 1.36933 * 119.99664 * 94.63776 * 5 4 3 7 7 H 1.08010 * 119.99927 * 213.12005 * 6 5 4 8 8 C 1.38807 * 120.00507 * 33.39260 * 6 5 4 9 9 N 1.31619 * 120.00401 * 217.24018 * 8 6 5 10 10 Si 1.86797 * 119.99775 * 37.24085 * 8 6 5 11 11 H 1.48502 * 109.47480 * 90.56256 * 10 8 6 12 12 H 1.48502 * 109.47296 * 210.56214 * 10 8 6 13 13 H 1.48503 * 109.47035 * 330.56139 * 10 8 6 14 14 C 1.46497 * 120.00106 * 274.64001 * 5 4 3 15 15 C 1.50705 * 109.46798 * 264.31593 * 14 5 4 16 16 C 1.33522 * 125.87102 * 94.23653 * 15 14 5 17 17 N 1.31516 * 115.86459 * 179.81526 * 16 15 14 18 18 C 1.30270 * 116.96924 * 0.48933 * 17 16 15 19 19 C 1.47792 * 125.47730 * 179.75672 * 18 17 16 20 20 C 1.39551 * 122.81875 * 359.71050 * 19 18 17 21 21 C 1.32958 * 114.92344 * 179.83206 * 20 19 18 22 22 S 1.75800 * 110.00497 * 0.41260 * 21 20 19 23 23 C 1.34846 * 122.81940 * 180.02562 * 19 18 17 24 24 S 1.76171 * 109.04618 * 359.73664 * 18 17 16 25 25 H 1.09000 * 109.46971 * 299.99922 * 1 2 3 26 26 H 1.08999 * 109.46741 * 59.99808 * 1 2 3 27 27 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47059 * 60.00754 * 3 2 1 29 29 H 1.08995 * 109.47183 * 299.99737 * 3 2 1 30 30 H 1.08995 * 109.47079 * 305.00332 * 4 3 2 31 31 H 1.09003 * 109.46646 * 185.00114 * 4 3 2 32 32 H 0.96996 * 120.00104 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47231 * 24.31055 * 14 5 4 34 34 H 1.08991 * 109.47350 * 144.31041 * 14 5 4 35 35 H 1.07995 * 122.06329 * 0.02562 * 16 15 14 36 36 H 1.08004 * 122.53928 * 0.02562 * 20 19 18 37 37 H 1.07994 * 124.99570 * 180.18073 * 21 20 19 38 38 H 1.08001 * 125.23858 * 359.92097 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.3589 1.3481 -2.3064 7 1 4.1745 1.0188 -3.3184 8 6 4.9885 2.5635 -2.0760 9 7 4.7285 3.5964 -2.8492 10 14 6.2049 2.7332 -0.6686 11 1 7.5715 2.4136 -1.1540 12 1 6.1755 4.1259 -0.1541 13 1 5.8347 1.7950 0.4214 14 6 4.0090 -0.8956 -1.3732 15 6 5.3991 -1.3942 -1.0725 16 6 5.8374 -1.8213 0.1142 17 7 7.0908 -2.2178 0.1540 18 6 7.7694 -2.1437 -0.9555 19 6 9.1856 -2.5321 -1.1223 20 6 9.9627 -3.0270 -0.0741 21 6 11.2155 -3.3303 -0.4001 22 16 11.4946 -2.9856 -2.1012 23 6 9.8371 -2.4323 -2.2987 24 16 6.7276 -1.5065 -2.2252 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5684 0.8426 31 1 3.9785 2.1765 0.0902 32 1 5.1688 4.4456 -2.6884 33 1 3.3048 -1.3351 -0.6668 34 1 3.7320 -1.1814 -2.3878 35 1 5.2011 -1.8431 0.9865 36 1 9.5749 -3.1568 0.9255 37 1 11.9541 -3.7263 0.2810 38 1 9.4070 -2.0693 -3.2204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453598366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:34 Heat of formation + Delta-G solvation = 63.083652 kcal Electronic energy + Delta-G solvation = -22444.793014 eV Core-core repulsion = 19121.254918 eV Total energy + Delta-G solvation = -3323.538096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.14026 -37.75927 -37.38964 -35.68465 -32.16737 -31.06386 -29.88403 -28.56814 -26.49998 -25.80450 -24.35512 -23.16303 -22.76059 -20.88332 -20.15452 -18.52898 -17.32991 -17.13504 -16.74051 -15.95710 -15.57246 -15.38211 -14.94294 -14.45760 -14.38083 -14.06777 -13.80398 -13.25635 -13.11497 -12.98349 -12.77926 -12.67709 -12.38347 -12.14685 -11.86428 -11.64056 -11.55241 -11.09921 -10.96011 -10.76369 -10.52952 -10.29186 -10.21473 -9.69716 -9.30823 -9.19310 -9.14069 -8.75960 -8.61233 -8.59093 -7.69045 -7.11828 -6.30292 -3.44959 0.59864 1.38714 1.56153 1.86502 1.90911 2.39609 2.72256 3.26326 3.38951 3.48417 3.62212 4.30164 4.39106 4.58194 4.81671 4.92389 5.17541 5.21571 5.48170 5.53288 5.62300 5.62821 5.76199 5.86936 5.91162 5.94968 5.98594 6.00460 6.08741 6.22194 6.36568 6.44630 6.50333 6.57891 6.72151 6.77029 7.65668 7.78589 8.15571 8.23033 8.77513 9.49996 9.92841 10.83765 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.003906 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.679389 B = 7166.709096 C = 8081.268121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.044 3.956 4 C 0.152 3.848 5 N -0.576 5.576 6 C -0.272 4.272 7 H 0.083 0.917 8 C 0.055 3.945 9 N -0.862 5.862 10 Si 0.831 3.169 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.260 1.260 14 C 0.211 3.789 15 C -0.177 4.177 16 C 0.000 4.000 17 N -0.455 5.455 18 C 0.070 3.930 19 C -0.015 4.015 20 C -0.100 4.100 21 C -0.219 4.219 22 S 0.109 5.891 23 C -0.203 4.203 24 S 0.102 5.898 25 H 0.031 0.969 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.267 0.733 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.165 0.835 36 H 0.149 0.851 37 H 0.167 0.833 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -11.324 3.849 12.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.034 4.034 4 C 0.026 3.974 5 N -0.295 5.295 6 C -0.401 4.401 7 H 0.100 0.900 8 C -0.150 4.150 9 N -0.499 5.499 10 Si 0.656 3.344 11 H -0.211 1.211 12 H -0.218 1.218 13 H -0.185 1.185 14 C 0.082 3.918 15 C -0.302 4.302 16 C -0.152 4.152 17 N -0.170 5.170 18 C -0.206 4.206 19 C -0.031 4.031 20 C -0.132 4.132 21 C -0.354 4.354 22 S 0.372 5.628 23 C -0.343 4.343 24 S 0.358 5.642 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.182 0.818 36 H 0.166 0.834 37 H 0.184 0.816 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.066 -11.371 2.212 13.076 hybrid contribution -1.002 0.898 2.505 2.844 sum 5.064 -10.473 4.717 12.553 Atomic orbital electron populations 1.22628 0.82722 1.01665 0.99325 1.87866 1.18268 1.28955 1.95286 1.23377 0.96849 0.83905 0.99312 1.21234 0.89809 0.98017 0.88316 1.44405 1.72713 0.99799 1.12581 1.18757 1.34534 0.99297 0.87527 0.89960 1.25384 0.97716 0.95577 0.96314 1.70084 1.39012 1.00308 1.40456 0.87652 0.84930 0.77097 0.84691 1.21142 1.21789 1.18482 1.19755 0.86373 0.84740 1.00891 1.27572 1.03889 1.02975 0.95814 1.21291 0.91264 1.04617 0.98048 1.66486 1.06766 1.17345 1.26368 1.25025 0.96906 1.06059 0.92638 1.16895 0.90409 1.02698 0.93141 1.20128 0.92587 0.99880 1.00573 1.25418 1.00776 1.10383 0.98845 1.84079 1.09836 1.62574 1.06293 1.25764 0.97633 1.09050 1.01840 1.84891 1.04559 1.59256 1.15520 0.95055 0.94468 0.90524 0.94816 0.92319 0.93575 0.91116 0.92323 0.89908 0.92117 0.81819 0.83351 0.81595 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.60 9.20 -35.23 -0.32 -6.93 16 3 C 0.04 0.80 6.28 37.16 0.23 1.04 16 4 C 0.15 3.16 4.43 -4.04 -0.02 3.14 16 5 N -0.58 -12.86 2.11 -174.61 -0.37 -13.23 16 6 C -0.27 -7.04 9.77 -15.06 -0.15 -7.18 16 7 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 8 C 0.05 1.47 4.95 -17.43 -0.09 1.39 16 9 N -0.86 -24.50 13.97 55.49 0.78 -23.72 16 10 Si 0.83 20.92 26.39 -169.99 -4.49 16.43 16 11 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.26 -6.38 5.88 56.52 0.33 -6.05 16 14 C 0.21 4.11 5.96 -5.19 -0.03 4.08 16 15 C -0.18 -3.43 6.12 -35.96 -0.22 -3.65 16 16 C 0.00 0.00 11.14 -19.34 -0.22 -0.22 16 17 N -0.46 -8.77 10.43 -11.37 -0.12 -8.89 16 18 C 0.07 1.28 7.41 -14.31 -0.11 1.18 16 19 C -0.02 -0.24 5.79 -106.70 -0.62 -0.86 16 20 C -0.10 -1.38 9.90 -40.92 -0.40 -1.78 16 21 C -0.22 -2.45 11.18 28.90 0.32 -2.12 16 22 S 0.11 1.20 23.32 -107.50 -2.51 -1.30 16 23 C -0.20 -2.80 10.76 29.53 0.32 -2.49 16 24 S 0.10 1.92 22.86 -107.50 -2.46 -0.53 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.91 8.11 -51.93 -0.42 0.48 16 31 H 0.07 1.58 4.37 -51.93 -0.23 1.35 16 32 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.08 1.50 6.82 -51.93 -0.35 1.14 16 34 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.16 2.78 8.06 -52.49 -0.42 2.35 16 36 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 37 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.17 2.16 7.84 -52.49 -0.41 1.75 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -29.56 349.54 -8.92 -38.48 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.84 Total: 0.35 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 0.14 Total: -5.94 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.29 Total: -45.84 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.32 Total: -6.93 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.49 Total: 16.43 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -4.96 Total: -1.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.56 -8.92 -38.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453598366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.568 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds