Wall clock time and date at job start Tue Mar 31 2020 14:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99870 * 2 1 4 4 C 1.53007 * 109.46838 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47143 * 65.00159 * 4 3 2 6 6 C 1.36933 * 119.99664 * 94.63776 * 5 4 3 7 7 H 1.08010 * 119.99927 * 213.12005 * 6 5 4 8 8 C 1.38807 * 120.00507 * 33.39260 * 6 5 4 9 9 N 1.31619 * 120.00401 * 217.24018 * 8 6 5 10 10 Si 1.86797 * 119.99775 * 37.24085 * 8 6 5 11 11 H 1.48502 * 109.47480 * 90.56256 * 10 8 6 12 12 H 1.48502 * 109.47296 * 210.56214 * 10 8 6 13 13 H 1.48503 * 109.47035 * 330.56139 * 10 8 6 14 14 C 1.46497 * 120.00106 * 274.64001 * 5 4 3 15 15 C 1.50705 * 109.46798 * 264.31593 * 14 5 4 16 16 C 1.33522 * 125.87102 * 94.23653 * 15 14 5 17 17 N 1.31516 * 115.86459 * 179.81526 * 16 15 14 18 18 C 1.30270 * 116.96924 * 0.48933 * 17 16 15 19 19 C 1.47792 * 125.47730 * 179.75672 * 18 17 16 20 20 C 1.39551 * 122.81875 * 359.71050 * 19 18 17 21 21 C 1.32958 * 114.92344 * 179.83206 * 20 19 18 22 22 S 1.75800 * 110.00497 * 0.41260 * 21 20 19 23 23 C 1.34846 * 122.81940 * 180.02562 * 19 18 17 24 24 S 1.76171 * 109.04618 * 359.73664 * 18 17 16 25 25 H 1.09000 * 109.46971 * 299.99922 * 1 2 3 26 26 H 1.08999 * 109.46741 * 59.99808 * 1 2 3 27 27 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47059 * 60.00754 * 3 2 1 29 29 H 1.08995 * 109.47183 * 299.99737 * 3 2 1 30 30 H 1.08995 * 109.47079 * 305.00332 * 4 3 2 31 31 H 1.09003 * 109.46646 * 185.00114 * 4 3 2 32 32 H 0.96996 * 120.00104 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47231 * 24.31055 * 14 5 4 34 34 H 1.08991 * 109.47350 * 144.31041 * 14 5 4 35 35 H 1.07995 * 122.06329 * 0.02562 * 16 15 14 36 36 H 1.08004 * 122.53928 * 0.02562 * 20 19 18 37 37 H 1.07994 * 124.99570 * 180.18073 * 21 20 19 38 38 H 1.08001 * 125.23858 * 359.92097 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.3589 1.3481 -2.3064 7 1 4.1745 1.0188 -3.3184 8 6 4.9885 2.5635 -2.0760 9 7 4.7285 3.5964 -2.8492 10 14 6.2049 2.7332 -0.6686 11 1 7.5715 2.4136 -1.1540 12 1 6.1755 4.1259 -0.1541 13 1 5.8347 1.7950 0.4214 14 6 4.0090 -0.8956 -1.3732 15 6 5.3991 -1.3942 -1.0725 16 6 5.8374 -1.8213 0.1142 17 7 7.0908 -2.2178 0.1540 18 6 7.7694 -2.1437 -0.9555 19 6 9.1856 -2.5321 -1.1223 20 6 9.9627 -3.0270 -0.0741 21 6 11.2155 -3.3303 -0.4001 22 16 11.4946 -2.9856 -2.1012 23 6 9.8371 -2.4323 -2.2987 24 16 6.7276 -1.5065 -2.2252 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5684 0.8426 31 1 3.9785 2.1765 0.0902 32 1 5.1688 4.4456 -2.6884 33 1 3.3048 -1.3351 -0.6668 34 1 3.7320 -1.1814 -2.3878 35 1 5.2011 -1.8431 0.9865 36 1 9.5749 -3.1568 0.9255 37 1 11.9541 -3.7263 0.2810 38 1 9.4070 -2.0693 -3.2204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453598366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:33 Heat of formation + Delta-G solvation = 45.702463 kcal Electronic energy + Delta-G solvation = -22445.546719 eV Core-core repulsion = 19121.254918 eV Total energy + Delta-G solvation = -3324.291801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56065 -39.12119 -38.58405 -37.27587 -34.06684 -32.55367 -31.07589 -30.06771 -27.95501 -27.05898 -25.95182 -24.50697 -24.11586 -22.56623 -21.47410 -19.66529 -18.88476 -18.73560 -18.05485 -17.42166 -17.01687 -16.70658 -16.50861 -15.93827 -15.84579 -15.42271 -15.24680 -14.78655 -14.72379 -14.32749 -14.07881 -13.89986 -13.80546 -13.40435 -13.23969 -13.21189 -13.04529 -12.70073 -12.50113 -12.14099 -12.00142 -11.92061 -11.77630 -11.58338 -10.71313 -10.65303 -10.48987 -10.43447 -10.12882 -9.72139 -8.99773 -8.90472 -8.34994 -5.48072 -0.66202 0.20865 0.40095 0.58865 0.89536 0.93166 1.23319 1.36782 1.43357 1.49997 2.23102 2.34640 2.87791 3.03922 3.24949 3.43679 3.97504 4.07584 4.20473 4.35417 4.40171 4.43887 4.46695 4.50859 4.53790 4.65634 4.66893 4.84104 4.88856 4.91434 4.98183 5.03577 5.15048 5.20008 5.32621 5.36160 5.83589 6.11019 6.39277 6.74860 6.89237 7.56999 8.01694 8.84247 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.003906 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.679389 B = 7166.709096 C = 8081.268121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.400 6.400 3 C 0.056 3.944 4 C 0.147 3.853 5 N -0.589 5.589 6 C -0.254 4.254 7 H 0.051 0.949 8 C 0.016 3.984 9 N -0.909 5.909 10 Si 0.877 3.123 11 H -0.305 1.305 12 H -0.293 1.293 13 H -0.249 1.249 14 C 0.221 3.779 15 C -0.197 4.197 16 C 0.009 3.991 17 N -0.475 5.475 18 C 0.091 3.909 19 C -0.052 4.052 20 C -0.124 4.124 21 C -0.204 4.204 22 S 0.176 5.824 23 C -0.213 4.213 24 S 0.082 5.918 25 H 0.049 0.951 26 H 0.033 0.967 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.265 0.735 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.185 0.815 36 H 0.146 0.854 37 H 0.201 0.799 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -13.480 5.521 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.023 4.023 4 C 0.022 3.978 5 N -0.309 5.309 6 C -0.384 4.384 7 H 0.068 0.932 8 C -0.184 4.184 9 N -0.550 5.550 10 Si 0.704 3.296 11 H -0.233 1.233 12 H -0.220 1.220 13 H -0.172 1.172 14 C 0.093 3.907 15 C -0.321 4.321 16 C -0.143 4.143 17 N -0.190 5.190 18 C -0.185 4.185 19 C -0.068 4.068 20 C -0.155 4.155 21 C -0.339 4.339 22 S 0.440 5.560 23 C -0.353 4.353 24 S 0.337 5.663 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.202 0.798 36 H 0.164 0.836 37 H 0.218 0.782 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.521 -13.556 3.915 15.989 hybrid contribution -1.291 1.234 1.936 2.634 sum 6.231 -12.322 5.852 14.996 Atomic orbital electron populations 1.22849 0.80498 1.03410 1.00045 1.87812 1.20607 1.28063 1.95412 1.23066 0.95278 0.84569 0.99350 1.21278 0.91486 0.97092 0.87943 1.44328 1.73483 1.00693 1.12360 1.18515 1.33032 0.99504 0.87341 0.93184 1.25639 0.99230 0.95620 0.97921 1.70152 1.41080 1.00800 1.42983 0.86906 0.82417 0.76991 0.83259 1.23331 1.21964 1.17237 1.19616 0.86926 0.83104 1.01066 1.27388 1.03575 1.05090 0.96086 1.21654 0.91390 1.02903 0.98336 1.66586 1.07061 1.18721 1.26592 1.25624 0.97818 1.03461 0.91642 1.17097 0.89533 1.05382 0.94828 1.20109 0.93554 1.01661 1.00158 1.25863 1.00323 1.08085 0.99650 1.83942 1.06457 1.60128 1.05462 1.26063 0.99778 1.08088 1.01406 1.84941 1.05240 1.59709 1.16366 0.93227 0.94827 0.88318 0.92164 0.94872 0.92139 0.93043 0.92567 0.88074 0.92706 0.79824 0.83625 0.78166 0.81255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.40 -13.01 9.20 -148.98 -1.37 -14.38 16 3 C 0.06 1.99 6.28 71.98 0.45 2.44 16 4 C 0.15 6.01 4.43 86.38 0.38 6.39 16 5 N -0.59 -26.40 2.11 -706.33 -1.49 -27.88 16 6 C -0.25 -13.56 9.77 84.03 0.82 -12.74 16 7 H 0.05 2.95 8.06 -2.91 -0.02 2.92 16 8 C 0.02 0.89 4.95 84.86 0.42 1.31 16 9 N -0.91 -53.82 13.97 21.65 0.30 -53.52 16 10 Si 0.88 44.31 26.39 68.60 1.81 46.12 16 11 H -0.30 -16.20 7.11 99.48 0.71 -15.49 16 12 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.25 -11.89 5.88 99.48 0.59 -11.31 16 14 C 0.22 8.53 5.96 85.64 0.51 9.04 16 15 C -0.20 -7.53 6.12 24.62 0.15 -7.38 16 16 C 0.01 0.31 11.14 83.67 0.93 1.25 16 17 N -0.48 -17.74 10.43 -189.90 -1.98 -19.72 16 18 C 0.09 3.29 7.41 87.45 0.65 3.94 16 19 C -0.05 -1.56 5.79 -21.21 -0.12 -1.68 16 20 C -0.12 -3.14 9.90 21.42 0.21 -2.93 16 21 C -0.20 -3.79 11.18 66.65 0.75 -3.04 16 22 S 0.18 3.25 23.32 -56.49 -1.32 1.93 16 23 C -0.21 -5.49 10.76 67.04 0.72 -4.77 16 24 S 0.08 3.08 22.86 -56.49 -1.29 1.79 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 2.27 8.11 -2.39 -0.02 2.25 16 31 H 0.05 2.29 4.37 -2.39 -0.01 2.28 16 32 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.10 3.51 6.82 -2.39 -0.02 3.49 16 34 H 0.05 2.16 8.08 -2.39 -0.02 2.14 16 35 H 0.18 5.80 8.06 -2.91 -0.02 5.78 16 36 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.17 4.19 7.84 -2.91 -0.02 4.16 16 Total: -1.00 -65.40 349.54 2.73 -62.67 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.95 Total: 9.24 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 7.12 Total: -6.24 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.17 Total: -101.13 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.37 Total: -14.38 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.81 Total: 46.12 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -2.61 Total: 3.72 kcal Total: -65.40 2.73 -62.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453598366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.373 kcal (2) G-P(sol) polarization free energy of solvation -65.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds