Wall clock time and date at job start Tue Mar 31 2020 13:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09003 * 109.47134 * 25.03301 * 3 2 1 5 5 N 1.46500 * 109.47103 * 145.02779 * 3 2 1 6 6 C 1.34777 * 120.00027 * 274.99956 * 5 3 2 7 7 O 1.21588 * 120.00178 * 0.02562 * 6 5 3 8 8 N 1.34780 * 120.00411 * 179.97438 * 6 5 3 9 9 C 1.46492 * 120.00454 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47209 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.47219 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99795 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00095 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00046 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00014 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46890 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47069 * 119.99445 * 15 13 11 18 18 H 1.48502 * 109.46848 * 240.00076 * 15 13 11 19 19 C 1.50693 * 109.47356 * 265.02781 * 3 2 1 20 20 C 1.38230 * 119.99745 * 264.98014 * 19 3 2 21 21 C 1.38210 * 120.03492 * 180.02562 * 20 19 3 22 22 C 1.38385 * 120.03876 * 0.02562 * 21 20 19 23 23 Cl 1.73607 * 119.99821 * 179.97438 * 22 21 20 24 24 C 1.38283 * 119.99953 * 359.97438 * 22 21 20 25 25 C 1.38447 * 120.00204 * 84.99722 * 19 3 2 26 26 F 1.35102 * 120.01663 * 0.02562 * 25 19 3 27 27 H 4.18735 * 15.04078 * 359.97438 * 4 2 1 28 28 H 0.96999 * 120.00118 * 94.99635 * 5 3 2 29 29 H 0.97008 * 119.99525 * 0.02562 * 8 6 5 30 30 H 1.09004 * 109.47057 * 300.00735 * 9 8 6 31 31 H 1.09003 * 109.47402 * 60.00067 * 9 8 6 32 32 H 1.09000 * 109.47180 * 299.99574 * 10 9 8 33 33 H 1.08995 * 109.47776 * 59.99865 * 10 9 8 34 34 H 0.97001 * 119.99895 * 180.02562 * 14 13 11 35 35 H 1.07993 * 119.98604 * 0.04180 * 20 19 3 36 36 H 1.08003 * 119.97444 * 180.27414 * 21 20 19 37 37 H 1.08002 * 120.02204 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9303 -0.4349 5 7 3.1338 1.1327 -0.7917 6 6 3.2626 1.0147 -2.1281 7 8 2.9735 -0.0311 -2.6767 8 7 3.7109 2.0563 -2.8566 9 6 3.8503 1.9282 -4.3092 10 6 4.3742 3.2435 -4.8892 11 6 4.5171 3.1119 -6.3837 12 1 4.2603 2.1829 -6.8710 13 6 4.9756 4.1775 -7.1289 14 7 5.2878 5.3089 -6.5355 15 14 5.1533 4.0142 -8.9812 16 1 4.7403 2.6506 -9.3998 17 1 4.2916 5.0206 -9.6518 18 1 6.5700 4.2413 -9.3644 19 6 3.1483 0.1240 1.4154 20 6 3.4769 1.3657 1.9263 21 6 3.9382 1.4796 3.2242 22 6 4.0721 0.3508 4.0134 23 17 4.6523 0.4951 5.6433 24 6 3.7438 -0.8920 3.5038 25 6 3.2810 -1.0062 2.2038 26 9 2.9608 -2.2201 1.7045 27 1 -1.0500 -0.0011 0.0000 28 1 3.3641 1.9672 -0.3541 29 1 3.9412 2.8908 -2.4189 30 1 4.5519 1.1257 -4.5375 31 1 2.8797 1.6980 -4.7486 32 1 3.6730 4.0461 -4.6609 33 1 5.3449 3.4733 -4.4499 34 1 5.6100 6.0587 -7.0598 35 1 3.3729 2.2472 1.3112 36 1 4.1904 2.4508 3.6239 37 1 3.8486 -1.7733 4.1193 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491181667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:53 Heat of formation + Delta-G solvation = -22.714563 kcal Electronic energy + Delta-G solvation = -23314.805093 eV Core-core repulsion = 19419.289625 eV Total energy + Delta-G solvation = -3895.515468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.13705 -41.44392 -40.29179 -37.90016 -37.00524 -36.29767 -34.86730 -33.65647 -32.32770 -31.82882 -31.16024 -27.85701 -26.42370 -24.32804 -23.23967 -22.88751 -22.08921 -19.97458 -19.56766 -18.77407 -18.45051 -17.99659 -17.36235 -16.94395 -16.68589 -16.65170 -16.48047 -15.84319 -15.71208 -15.54110 -15.25785 -14.71725 -14.63821 -14.48198 -14.28277 -14.23956 -13.21024 -13.18768 -12.95625 -12.69701 -12.51111 -12.41064 -12.24494 -12.08122 -11.80482 -11.66517 -11.47137 -11.32894 -11.20882 -10.67874 -10.58317 -10.15875 -9.91028 -9.80504 -8.23184 -6.32776 -0.29370 -0.06806 0.91368 1.23084 1.41858 1.43478 1.56232 1.73352 2.01733 2.10662 2.24999 2.42424 3.03516 3.11967 3.12291 3.38947 3.49473 3.54550 3.85168 3.94924 4.26483 4.34212 4.49211 4.53039 4.65094 4.78643 4.87218 4.91625 4.94918 4.98892 5.26020 5.30109 5.48501 5.50974 5.61319 5.78873 5.92226 6.18354 6.55723 6.80456 7.01883 7.36413 7.49381 8.88865 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.002216 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.186246 B =12634.683464 C =13493.972986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.242 4.242 3 C 0.324 3.676 4 H 0.097 0.903 5 N -0.723 5.723 6 C 0.703 3.297 7 O -0.632 6.632 8 N -0.727 5.727 9 C 0.160 3.840 10 C 0.024 3.976 11 C -0.545 4.545 12 H 0.058 0.942 13 C 0.008 3.992 14 N -0.926 5.926 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.125 4.125 20 C -0.065 4.065 21 C -0.104 4.104 22 C -0.009 4.009 23 Cl -0.047 7.047 24 C -0.141 4.141 25 C 0.114 3.886 26 F -0.138 7.138 27 H 0.252 0.748 28 H 0.414 0.586 29 H 0.409 0.591 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.010 0.990 33 H 0.011 0.989 34 H 0.266 0.734 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -7.162 27.062 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.243 4.243 3 C 0.218 3.782 4 H 0.115 0.885 5 N -0.382 5.382 6 C 0.403 3.597 7 O -0.513 6.513 8 N -0.382 5.382 9 C 0.036 3.964 10 C -0.013 4.013 11 C -0.583 4.583 12 H 0.076 0.924 13 C -0.191 4.191 14 N -0.565 5.565 15 Si 0.788 3.212 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.127 4.127 20 C -0.084 4.084 21 C -0.122 4.122 22 C -0.036 4.036 23 Cl -0.018 7.018 24 C -0.161 4.161 25 C 0.094 3.906 26 F -0.116 7.116 27 H 0.269 0.731 28 H 0.254 0.746 29 H 0.245 0.755 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.181 0.819 36 H 0.189 0.811 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.547 -7.952 26.630 28.162 hybrid contribution 0.141 0.408 -0.720 0.840 sum -4.406 -7.544 25.910 27.343 Atomic orbital electron populations 1.25810 0.96725 0.97118 0.97792 1.23408 0.94895 1.03314 1.02712 1.15819 0.83808 0.90941 0.87596 0.88547 1.44945 1.71397 1.17196 1.04624 1.16075 0.78039 0.83798 0.81829 1.90889 1.58735 1.29948 1.71736 1.45170 1.69802 1.14965 1.08242 1.21112 0.99287 0.99023 0.77013 1.19130 0.95680 0.91516 0.95013 1.21491 1.44403 0.99083 0.93356 0.92389 1.25838 0.94747 0.94846 1.03675 1.70054 1.45279 1.03629 1.37566 0.85419 0.77939 0.78435 0.79393 1.19083 1.20244 1.20231 1.19761 1.04018 0.94369 0.94535 1.20987 0.95852 0.96154 0.95370 1.21408 0.98791 0.99273 0.92765 1.20778 1.00600 0.94285 0.87923 1.98411 1.86704 1.98170 1.18544 1.21083 1.01884 0.99171 0.93919 1.17327 1.00822 0.79753 0.92721 1.91530 1.90365 1.42093 1.87612 0.73129 0.74576 0.75484 0.93664 0.93847 0.97139 0.97027 0.92551 0.81864 0.81062 0.81929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 19.25 74.32 1.43 -1.98 16 2 C -0.24 -6.24 12.82 31.12 0.40 -5.85 16 3 C 0.32 8.05 2.40 42.44 0.10 8.15 16 4 H 0.10 2.90 7.23 -2.39 -0.02 2.88 16 5 N -0.72 -17.71 4.97 -470.24 -2.33 -20.05 16 6 C 0.70 24.25 8.51 179.05 1.52 25.78 16 7 O -0.63 -27.67 16.01 -3.99 -0.06 -27.73 16 8 N -0.73 -24.87 5.56 -478.55 -2.66 -27.53 16 9 C 0.16 6.86 5.61 86.38 0.48 7.35 16 10 C 0.02 1.20 5.09 29.85 0.15 1.35 16 11 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 12 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 13 C 0.01 0.43 5.46 84.66 0.46 0.89 16 14 N -0.93 -53.59 13.29 21.45 0.28 -53.30 16 15 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 C -0.13 -2.33 5.02 -19.82 -0.10 -2.43 16 20 C -0.07 -0.83 9.23 22.26 0.21 -0.62 16 21 C -0.10 -1.09 9.83 22.30 0.22 -0.87 16 22 C -0.01 -0.11 6.32 22.32 0.14 0.03 16 23 Cl -0.05 -0.55 28.96 -2.72 -0.08 -0.63 16 24 C -0.14 -2.05 9.81 22.33 0.22 -1.83 16 25 C 0.11 2.15 7.24 22.37 0.16 2.31 16 26 F -0.14 -3.10 16.57 44.97 0.75 -2.36 16 27 H 0.25 3.26 7.80 -4.42 -0.03 3.23 16 28 H 0.41 6.89 6.22 -92.71 -0.58 6.32 16 29 H 0.41 11.41 8.49 -92.70 -0.79 10.63 16 30 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.16 1.31 6.07 -2.91 -0.02 1.30 16 36 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -72.15 352.45 3.32 -68.83 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -0.23 Total: 15.04 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 5.64 Total: 2.29 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -4.71 Total: -100.88 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.73 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.75 Total: -2.36 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -72.15 3.32 -68.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491181667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.113 kcal (2) G-P(sol) polarization free energy of solvation -72.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds