Wall clock time and date at job start Tue Mar 31 2020 13:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09009 * 109.46824 * 161.97131 * 3 2 1 5 5 N 1.46498 * 109.47380 * 41.97219 * 3 2 1 6 6 C 1.34782 * 120.00025 * 87.12048 * 5 3 2 7 7 O 1.21593 * 119.99662 * 0.02562 * 6 5 3 8 8 N 1.34775 * 120.00314 * 179.72827 * 6 5 3 9 9 C 1.46493 * 120.00313 * 180.28078 * 8 6 5 10 10 C 1.53001 * 109.47013 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46975 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00206 * 179.97438 * 11 10 9 14 14 N 1.31523 * 120.00135 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00558 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47404 * 89.99673 * 15 13 11 17 17 H 1.48504 * 109.47272 * 210.00191 * 15 13 11 18 18 H 1.48509 * 109.46637 * 330.00014 * 15 13 11 19 19 C 1.50703 * 109.47599 * 281.96772 * 3 2 1 20 20 C 1.38230 * 119.99291 * 92.88168 * 19 3 2 21 21 C 1.38207 * 120.03247 * 180.02562 * 20 19 3 22 22 C 1.38383 * 120.03743 * 359.97438 * 21 20 19 23 23 Cl 1.73607 * 119.99738 * 179.97438 * 22 21 20 24 24 C 1.38287 * 120.00282 * 0.02562 * 22 21 20 25 25 C 1.38445 * 120.00043 * 272.61430 * 19 3 2 26 26 F 1.35096 * 120.01863 * 359.97438 * 25 19 3 27 27 H 4.18740 * 15.03903 * 0.02562 * 4 2 1 28 28 H 0.97000 * 120.00184 * 267.12180 * 5 3 2 29 29 H 0.97009 * 119.99220 * 0.27196 * 8 6 5 30 30 H 1.09004 * 109.46737 * 299.99520 * 9 8 6 31 31 H 1.09000 * 109.47811 * 59.99549 * 9 8 6 32 32 H 1.09004 * 109.46977 * 299.99373 * 10 9 8 33 33 H 1.08995 * 109.47390 * 59.99892 * 10 9 8 34 34 H 0.96996 * 120.00032 * 180.02562 * 14 13 11 35 35 H 1.07995 * 119.98365 * 0.02562 * 20 19 3 36 36 H 1.07997 * 119.97552 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.01953 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9781 -0.3181 5 7 3.1348 -1.0260 -0.9237 6 6 3.3041 -0.7332 -2.2284 7 8 3.0515 0.3832 -2.6386 8 7 3.7590 -1.6761 -3.0772 9 6 3.9488 -1.3560 -4.4941 10 6 4.4699 -2.5917 -5.2306 11 6 4.6645 -2.2627 -6.6883 12 1 4.4388 -1.2715 -7.0530 13 6 5.1308 -3.2270 -7.5564 14 7 5.4053 -4.4342 -7.1125 15 14 5.3728 -2.8191 -9.3632 16 1 6.7529 -2.3139 -9.5762 17 1 5.1617 -4.0416 -10.1794 18 1 4.3960 -1.7772 -9.7705 19 6 3.1486 -0.2937 1.3899 20 6 3.4363 -1.5942 1.7597 21 6 3.8968 -1.8652 3.0343 22 6 4.0708 -0.8349 3.9415 23 17 4.6486 -1.1765 5.5426 24 6 3.7834 0.4667 3.5733 25 6 3.3274 0.7389 2.2945 26 9 3.0519 2.0107 1.9316 27 1 -1.0500 -0.0009 0.0008 28 1 3.3367 -1.9165 -0.5964 29 1 3.9609 -2.5666 -2.7497 30 1 2.9972 -1.0485 -4.9277 31 1 4.6708 -0.5451 -4.5900 32 1 5.4216 -2.8988 -4.7969 33 1 3.7483 -3.4030 -5.1349 34 1 5.7337 -5.1125 -7.7232 35 1 3.3012 -2.3989 1.0522 36 1 4.1209 -2.8816 3.3223 37 1 3.9187 1.2710 4.2813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491181668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:56 Heat of formation + Delta-G solvation = -2.779106 kcal Electronic energy + Delta-G solvation = -23314.309630 eV Core-core repulsion = 19419.658628 eV Total energy + Delta-G solvation = -3894.651002 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.38045 -40.36812 -39.32978 -37.19812 -35.94727 -34.71456 -33.02932 -32.45954 -31.46592 -31.17467 -29.46375 -26.80314 -24.63572 -23.57534 -22.47988 -21.16636 -20.69730 -18.82763 -18.66487 -17.88608 -17.22844 -16.52896 -16.35452 -16.14632 -15.66123 -15.41307 -15.09718 -14.61870 -14.46906 -14.35918 -13.97546 -13.87720 -13.69717 -13.41945 -13.05378 -12.52620 -12.29767 -12.04603 -11.78229 -11.53235 -11.20683 -11.04806 -10.79216 -10.64210 -10.42470 -10.34417 -10.01354 -9.59141 -9.54924 -9.41539 -9.28075 -9.16193 -8.52898 -8.32998 -6.10272 -4.12863 0.35286 0.53363 1.48607 2.30746 2.62979 2.86183 3.18076 3.29374 3.35590 3.40237 3.46457 3.69390 4.03419 4.08189 4.36348 4.37993 4.41509 4.55024 4.63058 4.93849 5.14612 5.27024 5.32941 5.37046 5.54342 5.62411 5.75613 6.10961 6.24101 6.32872 6.37143 6.74773 6.92418 7.07001 7.46086 7.53999 7.61276 7.88741 8.21314 8.33368 8.85531 8.93867 9.52015 11.01393 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.002222 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.489072 B =12600.258383 C =13436.019652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.199 4.199 3 C 0.321 3.679 4 H 0.125 0.875 5 N -0.745 5.745 6 C 0.702 3.298 7 O -0.589 6.589 8 N -0.734 5.734 9 C 0.139 3.861 10 C 0.013 3.987 11 C -0.521 4.521 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.116 4.116 20 C -0.067 4.067 21 C -0.114 4.114 22 C -0.006 4.006 23 Cl -0.055 7.055 24 C -0.144 4.144 25 C 0.132 3.868 26 F -0.123 7.123 27 H 0.220 0.780 28 H 0.396 0.604 29 H 0.394 0.606 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.262 0.738 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 4.558 26.691 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.200 4.200 3 C 0.215 3.785 4 H 0.142 0.858 5 N -0.403 5.403 6 C 0.401 3.599 7 O -0.467 6.467 8 N -0.388 5.388 9 C 0.017 3.983 10 C -0.024 4.024 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.118 4.118 20 C -0.085 4.085 21 C -0.133 4.133 22 C -0.033 4.033 23 Cl -0.026 7.026 24 C -0.163 4.163 25 C 0.112 3.888 26 F -0.101 7.101 27 H 0.237 0.763 28 H 0.232 0.768 29 H 0.227 0.773 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.866 5.438 26.298 27.291 hybrid contribution 0.135 -0.568 -0.585 0.827 sum -4.731 4.869 25.712 26.594 Atomic orbital electron populations 1.24928 0.95789 0.99200 0.99044 1.23052 0.94123 1.01498 1.01336 1.15931 0.83586 0.94511 0.84445 0.85760 1.45205 1.72874 1.14770 1.07407 1.16013 0.78417 0.85163 0.80268 1.90917 1.57960 1.21217 1.76582 1.45525 1.69554 1.13386 1.10286 1.21641 1.00319 1.00511 0.75849 1.19328 0.96583 0.91553 0.94980 1.21047 1.44324 0.97829 0.92731 0.92192 1.24995 0.95252 0.94933 0.99123 1.69955 1.44952 1.03035 1.35427 0.86508 0.78641 0.77865 0.84519 1.20547 1.21184 1.19709 1.19902 1.02718 0.93616 0.95564 1.20779 0.96537 0.95357 0.95833 1.21117 1.00224 0.99449 0.92484 1.20647 1.00970 0.93866 0.87829 1.98403 1.86919 1.95283 1.21946 1.20962 1.02752 0.96926 0.95689 1.17135 0.99818 0.79043 0.92785 1.91569 1.91014 1.35766 1.91782 0.76323 0.76777 0.77301 0.92654 0.92599 0.95919 0.95950 0.92854 0.83825 0.83643 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 19.25 29.55 0.57 -1.38 16 2 C -0.20 -2.56 12.85 -37.12 -0.48 -3.04 16 3 C 0.32 3.96 2.45 -71.87 -0.18 3.78 16 4 H 0.12 1.77 7.08 -51.92 -0.37 1.40 16 5 N -0.74 -9.34 4.95 -62.60 -0.31 -9.65 16 6 C 0.70 12.10 8.54 -86.91 -0.74 11.35 16 7 O -0.59 -12.60 15.97 5.28 0.08 -12.52 16 8 N -0.73 -12.65 5.56 -65.23 -0.36 -13.01 16 9 C 0.14 2.96 5.61 -4.05 -0.02 2.93 16 10 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 11 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 15 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.12 -1.12 5.01 -104.55 -0.52 -1.64 16 20 C -0.07 -0.49 9.23 -39.60 -0.37 -0.86 16 21 C -0.11 -0.75 9.83 -39.54 -0.39 -1.14 16 22 C -0.01 -0.05 6.32 -39.51 -0.25 -0.30 16 23 Cl -0.05 -0.37 28.96 -51.86 -1.50 -1.88 16 24 C -0.14 -1.13 9.81 -39.48 -0.39 -1.51 16 25 C 0.13 1.27 7.24 -39.42 -0.29 0.98 16 26 F -0.12 -1.34 16.52 2.25 0.04 -1.30 16 27 H 0.22 1.65 7.80 -54.09 -0.42 1.23 16 28 H 0.40 3.63 6.32 -40.82 -0.26 3.38 16 29 H 0.39 5.68 8.49 -40.82 -0.35 5.33 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.14 0.78 6.16 -52.49 -0.32 0.46 16 36 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -33.24 352.47 -8.42 -41.66 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.80 Total: 4.07 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -3.60 Total: -3.76 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.06 Total: -47.86 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.24 -8.42 -41.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491181668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.879 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds