Wall clock time and date at job start Tue Mar 31 2020 13:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09009 * 109.46824 * 161.97131 * 3 2 1 5 5 N 1.46498 * 109.47380 * 41.97219 * 3 2 1 6 6 C 1.34782 * 120.00025 * 87.12048 * 5 3 2 7 7 O 1.21593 * 119.99662 * 0.02562 * 6 5 3 8 8 N 1.34775 * 120.00314 * 179.72827 * 6 5 3 9 9 C 1.46493 * 120.00313 * 180.28078 * 8 6 5 10 10 C 1.53001 * 109.47013 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46975 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00206 * 179.97438 * 11 10 9 14 14 N 1.31523 * 120.00135 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00558 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47404 * 89.99673 * 15 13 11 17 17 H 1.48504 * 109.47272 * 210.00191 * 15 13 11 18 18 H 1.48509 * 109.46637 * 330.00014 * 15 13 11 19 19 C 1.50703 * 109.47599 * 281.96772 * 3 2 1 20 20 C 1.38230 * 119.99291 * 92.88168 * 19 3 2 21 21 C 1.38207 * 120.03247 * 180.02562 * 20 19 3 22 22 C 1.38383 * 120.03743 * 359.97438 * 21 20 19 23 23 Cl 1.73607 * 119.99738 * 179.97438 * 22 21 20 24 24 C 1.38287 * 120.00282 * 0.02562 * 22 21 20 25 25 C 1.38445 * 120.00043 * 272.61430 * 19 3 2 26 26 F 1.35096 * 120.01863 * 359.97438 * 25 19 3 27 27 H 4.18740 * 15.03903 * 0.02562 * 4 2 1 28 28 H 0.97000 * 120.00184 * 267.12180 * 5 3 2 29 29 H 0.97009 * 119.99220 * 0.27196 * 8 6 5 30 30 H 1.09004 * 109.46737 * 299.99520 * 9 8 6 31 31 H 1.09000 * 109.47811 * 59.99549 * 9 8 6 32 32 H 1.09004 * 109.46977 * 299.99373 * 10 9 8 33 33 H 1.08995 * 109.47390 * 59.99892 * 10 9 8 34 34 H 0.96996 * 120.00032 * 180.02562 * 14 13 11 35 35 H 1.07995 * 119.98365 * 0.02562 * 20 19 3 36 36 H 1.07997 * 119.97552 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.01953 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9781 -0.3181 5 7 3.1348 -1.0260 -0.9237 6 6 3.3041 -0.7332 -2.2284 7 8 3.0515 0.3832 -2.6386 8 7 3.7590 -1.6761 -3.0772 9 6 3.9488 -1.3560 -4.4941 10 6 4.4699 -2.5917 -5.2306 11 6 4.6645 -2.2627 -6.6883 12 1 4.4388 -1.2715 -7.0530 13 6 5.1308 -3.2270 -7.5564 14 7 5.4053 -4.4342 -7.1125 15 14 5.3728 -2.8191 -9.3632 16 1 6.7529 -2.3139 -9.5762 17 1 5.1617 -4.0416 -10.1794 18 1 4.3960 -1.7772 -9.7705 19 6 3.1486 -0.2937 1.3899 20 6 3.4363 -1.5942 1.7597 21 6 3.8968 -1.8652 3.0343 22 6 4.0708 -0.8349 3.9415 23 17 4.6486 -1.1765 5.5426 24 6 3.7834 0.4667 3.5733 25 6 3.3274 0.7389 2.2945 26 9 3.0519 2.0107 1.9316 27 1 -1.0500 -0.0009 0.0008 28 1 3.3367 -1.9165 -0.5964 29 1 3.9609 -2.5666 -2.7497 30 1 2.9972 -1.0485 -4.9277 31 1 4.6708 -0.5451 -4.5900 32 1 5.4216 -2.8988 -4.7969 33 1 3.7483 -3.4030 -5.1349 34 1 5.7337 -5.1125 -7.7232 35 1 3.3012 -2.3989 1.0522 36 1 4.1209 -2.8816 3.3223 37 1 3.9187 1.2710 4.2813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491181668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:55 Heat of formation + Delta-G solvation = -23.358127 kcal Electronic energy + Delta-G solvation = -23315.202003 eV Core-core repulsion = 19419.658628 eV Total energy + Delta-G solvation = -3895.543375 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.14166 -41.43961 -40.29120 -37.89885 -37.00524 -36.29914 -34.86621 -33.65287 -32.32640 -31.83065 -31.16048 -27.85389 -26.41905 -24.32370 -23.23959 -22.88880 -22.09019 -19.97650 -19.56383 -18.77768 -18.44980 -17.99377 -17.37499 -16.93948 -16.68803 -16.64838 -16.48302 -15.84700 -15.71082 -15.51859 -15.25817 -14.71688 -14.64163 -14.48618 -14.27727 -14.23926 -13.21396 -13.18961 -12.94172 -12.69920 -12.52127 -12.40951 -12.23609 -12.08189 -11.81025 -11.66509 -11.48056 -11.32635 -11.21644 -10.67833 -10.57718 -10.15762 -9.90964 -9.80959 -8.22972 -6.32711 -0.29442 -0.06724 0.91328 1.23274 1.43280 1.43463 1.54948 1.73231 2.01072 2.11222 2.25235 2.42500 3.03492 3.12090 3.12357 3.39282 3.49812 3.55084 3.84911 3.94865 4.26478 4.34261 4.49146 4.53024 4.65534 4.78821 4.87212 4.92035 4.95097 4.98945 5.25912 5.29993 5.48619 5.50803 5.61314 5.78796 5.92229 6.18351 6.55594 6.80312 7.01829 7.36424 7.49189 8.88863 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.002222 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.489072 B =12600.258383 C =13436.019652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.243 4.243 3 C 0.323 3.677 4 H 0.097 0.903 5 N -0.722 5.722 6 C 0.703 3.297 7 O -0.633 6.633 8 N -0.727 5.727 9 C 0.160 3.840 10 C 0.024 3.976 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.008 3.992 14 N -0.926 5.926 15 Si 0.963 3.037 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.267 1.267 19 C -0.125 4.125 20 C -0.065 4.065 21 C -0.104 4.104 22 C -0.009 4.009 23 Cl -0.047 7.047 24 C -0.142 4.142 25 C 0.113 3.887 26 F -0.138 7.138 27 H 0.253 0.747 28 H 0.414 0.586 29 H 0.409 0.591 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.011 0.989 33 H 0.010 0.990 34 H 0.266 0.734 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 3.641 27.646 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.244 4.244 3 C 0.217 3.783 4 H 0.115 0.885 5 N -0.381 5.381 6 C 0.403 3.597 7 O -0.514 6.514 8 N -0.382 5.382 9 C 0.036 3.964 10 C -0.013 4.013 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.191 4.191 14 N -0.565 5.565 15 Si 0.788 3.212 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.192 1.192 19 C -0.127 4.127 20 C -0.083 4.083 21 C -0.123 4.123 22 C -0.036 4.036 23 Cl -0.018 7.018 24 C -0.161 4.161 25 C 0.093 3.907 26 F -0.116 7.116 27 H 0.269 0.731 28 H 0.254 0.746 29 H 0.245 0.755 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.182 0.818 36 H 0.189 0.811 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.082 4.484 27.316 28.145 hybrid contribution 0.169 -0.300 -0.764 0.838 sum -4.912 4.183 26.553 27.325 Atomic orbital electron populations 1.25816 0.96708 0.97332 0.97462 1.23398 0.94864 1.03235 1.02906 1.15823 0.83833 0.93008 0.85589 0.88518 1.44930 1.71589 1.15883 1.05693 1.16078 0.77969 0.84272 0.81419 1.90889 1.59718 1.23033 1.77717 1.45169 1.69778 1.14303 1.08914 1.21115 0.99094 0.98512 0.77721 1.19126 0.95656 0.92301 0.94224 1.21463 1.44543 0.97959 0.94470 0.92370 1.25840 0.94839 0.94775 1.03633 1.70050 1.45542 1.03894 1.37042 0.85471 0.78802 0.77847 0.79088 1.19788 1.20519 1.19175 1.19774 1.03999 0.94783 0.94161 1.20993 0.95905 0.94739 0.96656 1.21407 0.98679 1.00480 0.91699 1.20780 1.00647 0.93849 0.88300 1.98411 1.86778 1.95189 1.21455 1.21084 1.02102 0.97774 0.95128 1.17337 1.01124 0.78540 0.93654 1.91527 1.91348 1.36729 1.92016 0.73082 0.74596 0.75479 0.93845 0.93649 0.97044 0.97145 0.92548 0.81850 0.81068 0.81942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 19.25 74.32 1.43 -1.89 16 2 C -0.24 -6.20 12.85 31.12 0.40 -5.80 16 3 C 0.32 8.04 2.45 42.44 0.10 8.14 16 4 H 0.10 2.93 7.08 -2.38 -0.02 2.92 16 5 N -0.72 -17.72 4.95 -470.22 -2.33 -20.05 16 6 C 0.70 24.28 8.54 179.05 1.53 25.80 16 7 O -0.63 -27.71 15.97 -4.01 -0.06 -27.77 16 8 N -0.73 -24.89 5.56 -478.54 -2.66 -27.55 16 9 C 0.16 6.86 5.61 86.38 0.48 7.35 16 10 C 0.02 1.21 5.09 29.85 0.15 1.37 16 11 C -0.55 -30.29 9.11 25.60 0.23 -30.05 16 12 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 13 C 0.01 0.44 5.46 84.65 0.46 0.90 16 14 N -0.93 -53.64 13.29 21.45 0.28 -53.36 16 15 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 C -0.13 -2.35 5.01 -19.82 -0.10 -2.45 16 20 C -0.06 -0.82 9.23 22.26 0.21 -0.62 16 21 C -0.10 -1.10 9.83 22.30 0.22 -0.88 16 22 C -0.01 -0.11 6.32 22.32 0.14 0.03 16 23 Cl -0.05 -0.55 28.96 -2.72 -0.08 -0.63 16 24 C -0.14 -2.07 9.81 22.33 0.22 -1.85 16 25 C 0.11 2.16 7.24 22.37 0.16 2.32 16 26 F -0.14 -3.13 16.52 44.97 0.74 -2.39 16 27 H 0.25 3.16 7.80 -4.42 -0.03 3.13 16 28 H 0.41 6.91 6.32 -92.71 -0.59 6.33 16 29 H 0.41 11.43 8.49 -92.70 -0.79 10.64 16 30 H 0.04 1.96 8.14 -2.38 -0.02 1.95 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.16 1.32 6.16 -2.91 -0.02 1.30 16 36 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 37 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -72.13 352.47 3.33 -68.80 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -0.24 Total: 15.15 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 5.64 Total: 2.38 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -4.70 Total: -100.96 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.06 Total: -27.77 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.74 Total: -2.39 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -72.13 3.33 -68.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491181668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.439 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds