Wall clock time and date at job start Tue Mar 31 2020 14:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47210 * 354.41625 * 3 2 1 5 5 C 1.36716 * 120.00035 * 264.74678 * 4 3 2 6 6 H 1.08006 * 119.99429 * 207.29945 * 5 4 3 7 7 C 1.39116 * 119.99943 * 27.30378 * 5 4 3 8 8 N 1.31321 * 120.00299 * 358.21440 * 7 5 4 9 9 Si 1.86797 * 119.99867 * 178.21623 * 7 5 4 10 10 H 1.48504 * 109.47398 * 60.00134 * 9 7 5 11 11 H 1.48503 * 109.47377 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47238 * 300.00195 * 9 7 5 13 13 C 1.34776 * 119.99727 * 84.74898 * 4 3 2 14 14 O 1.21757 * 120.00156 * 179.97438 * 13 4 3 15 15 C 1.46231 * 120.00217 * 0.27168 * 13 4 3 16 16 C 1.34976 * 119.99969 * 172.66256 * 15 13 4 17 17 C 1.47140 * 120.00355 * 350.31699 * 16 15 13 18 18 C 1.39881 * 120.17341 * 315.02502 * 17 16 15 19 19 C 1.37882 * 119.82260 * 179.74149 * 18 17 16 20 20 C 1.38413 * 120.17240 * 0.55283 * 19 18 17 21 21 C 1.50700 * 119.82308 * 179.71663 * 20 19 18 22 22 F 1.39902 * 109.47411 * 269.97764 * 21 20 19 23 23 F 1.39895 * 109.47054 * 29.98249 * 21 20 19 24 24 F 1.39898 * 109.46933 * 149.97969 * 21 20 19 25 25 C 1.38408 * 120.35188 * 359.69996 * 20 19 18 26 26 C 1.37879 * 120.17768 * 0.02562 * 25 20 19 27 27 H 1.09008 * 109.46988 * 234.41659 * 3 2 1 28 28 H 1.08998 * 109.46911 * 114.41955 * 3 2 1 29 29 H 0.97001 * 119.99786 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.99505 * 352.66598 * 15 13 4 31 31 H 1.07999 * 119.99883 * 170.32440 * 16 15 13 32 32 H 1.08001 * 120.08912 * 0.02562 * 18 17 16 33 33 H 1.07997 * 119.91509 * 180.26853 * 19 18 17 34 34 H 1.08005 * 119.91715 * 179.97438 * 25 20 19 35 35 H 1.08000 * 120.09384 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3737 0.1344 5 6 3.4273 -1.8643 1.3670 6 1 4.1648 -2.6483 1.4562 7 6 2.8133 -1.3539 2.5062 8 7 1.9423 -0.3768 2.4008 9 14 3.2278 -2.0584 4.1858 10 1 4.6785 -1.8840 4.4515 11 1 2.4443 -1.3474 5.2280 12 1 2.8899 -3.5042 4.2134 13 6 3.2212 -2.1545 -0.9571 14 8 3.6280 -3.2967 -0.8456 15 6 2.8736 -1.6278 -2.2763 16 6 3.1361 -2.3538 -3.3835 17 6 3.9582 -3.5704 -3.2878 18 6 5.1388 -3.5640 -2.5375 19 6 5.9008 -4.7096 -2.4484 20 6 5.5063 -5.8606 -3.1082 21 6 6.3486 -7.1065 -3.0106 22 9 7.2899 -7.1154 -4.0455 23 9 7.0102 -7.1267 -1.7782 24 9 5.5274 -8.2340 -3.1175 25 6 4.3423 -5.8736 -3.8568 26 6 3.5663 -4.7378 -3.9512 27 1 2.9711 0.5989 0.8358 28 1 2.9711 0.4257 -0.9357 29 1 1.5139 -0.0211 3.1951 30 1 2.4069 -0.6578 -2.3646 31 1 2.7428 -2.0417 -4.3396 32 1 5.4502 -2.6654 -2.0257 33 1 6.8103 -4.7075 -1.8660 34 1 4.0413 -6.7755 -4.3691 35 1 2.6584 -4.7493 -4.5361 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491364202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:50 Heat of formation + Delta-G solvation = -89.201960 kcal Electronic energy + Delta-G solvation = -26642.434589 eV Core-core repulsion = 22192.239331 eV Total energy + Delta-G solvation = -4450.195258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.02709 -47.53736 -47.50090 -39.60505 -38.47345 -35.97994 -34.58935 -33.51131 -32.05692 -30.83236 -30.22093 -27.62032 -26.19424 -24.93184 -22.87063 -22.38735 -21.02142 -18.55004 -18.36184 -18.27377 -18.17533 -17.94192 -17.05439 -16.39363 -15.32426 -14.99473 -14.69620 -14.51714 -14.38059 -14.21874 -14.00163 -13.95702 -13.77524 -13.66190 -13.60827 -13.32544 -13.11522 -13.00486 -12.80024 -12.40790 -12.09366 -11.80846 -11.68836 -11.38738 -11.26478 -11.02456 -11.00547 -10.66808 -10.55816 -10.52491 -9.73008 -9.33388 -8.91529 -8.63910 -8.13854 -7.76528 -6.64728 -4.20756 0.85034 1.68406 2.01279 2.83305 3.08405 3.14166 3.16130 3.58697 3.85337 3.88151 3.93018 4.02076 4.14504 4.20194 4.59713 4.71567 4.82476 4.96263 5.07895 5.10871 5.16424 5.44705 5.55675 5.67885 5.75496 5.96820 6.04000 6.18279 6.27435 6.46537 6.47565 6.54467 6.66942 6.86975 7.09337 7.27063 7.82254 8.15226 8.68609 8.86216 9.00837 9.61857 10.37871 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.003755 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.473521 B = 7455.723493 C = 8792.453440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.250 3.750 3 C 0.218 3.782 4 N -0.427 5.427 5 C -0.300 4.300 6 H 0.108 0.892 7 C 0.034 3.966 8 N -0.880 5.880 9 Si 0.935 3.065 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.464 3.536 14 O -0.561 6.561 15 C -0.165 4.165 16 C -0.087 4.087 17 C -0.010 4.010 18 C -0.028 4.028 19 C -0.085 4.085 20 C -0.186 4.186 21 C 0.508 3.492 22 F -0.183 7.183 23 F -0.178 7.178 24 F -0.182 7.182 25 C -0.088 4.088 26 C -0.114 4.114 27 H 0.137 0.863 28 H 0.081 0.919 29 H 0.278 0.722 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -2.862 -11.281 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.068 4.068 3 C 0.091 3.909 4 N -0.144 5.144 5 C -0.427 4.427 6 H 0.125 0.875 7 C -0.170 4.170 8 N -0.519 5.519 9 Si 0.761 3.239 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.255 3.745 14 O -0.445 6.445 15 C -0.187 4.187 16 C -0.107 4.107 17 C -0.011 4.011 18 C -0.046 4.046 19 C -0.104 4.104 20 C -0.188 4.188 21 C 0.454 3.546 22 F -0.164 7.164 23 F -0.160 7.160 24 F -0.163 7.163 25 C -0.106 4.106 26 C -0.132 4.132 27 H 0.154 0.846 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.049 -3.318 -10.998 12.983 hybrid contribution 0.322 -0.386 1.216 1.316 sum 6.371 -3.704 -9.782 12.247 Atomic orbital electron populations 1.80905 1.13659 1.08412 1.12846 1.29248 0.95329 0.92524 0.89710 1.18912 0.81586 0.87305 1.03113 1.43588 1.54756 1.09039 1.07057 1.19704 1.21353 1.20644 0.81048 0.87465 1.25489 0.94701 0.95958 1.00820 1.69598 1.26402 1.24608 1.31278 0.85830 0.78642 0.79389 0.80003 1.19481 1.20789 1.19634 1.18203 0.85506 0.86148 0.84617 1.90743 1.50359 1.17798 1.85638 1.23370 1.02023 0.99651 0.93628 1.22096 0.97015 0.93687 0.97941 1.19062 0.93810 0.93493 0.94697 1.21072 0.92451 0.98079 0.92997 1.20643 1.00190 0.91713 0.97815 1.19844 0.98698 0.93196 1.07032 1.18437 0.78363 0.84262 0.73500 1.93192 1.67095 1.96840 1.59312 1.93182 1.82099 1.96759 1.43943 1.93161 1.72394 1.54954 1.95801 1.20578 0.93233 0.98750 0.98030 1.21085 0.99514 0.92044 1.00565 0.84578 0.90093 0.91140 0.85812 0.85181 0.85481 0.85464 0.85602 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.98 18.54 42.15 0.78 -10.20 16 2 C 0.25 5.26 13.09 -20.76 -0.27 4.99 16 3 C 0.22 4.02 4.78 -6.83 -0.03 3.99 16 4 N -0.43 -9.24 2.59 -119.59 -0.31 -9.55 16 5 C -0.30 -7.22 9.20 -15.05 -0.14 -7.35 16 6 H 0.11 2.69 7.47 -52.48 -0.39 2.30 16 7 C 0.03 0.81 5.31 -17.44 -0.09 0.72 16 8 N -0.88 -20.95 8.77 55.50 0.49 -20.46 16 9 Si 0.94 19.26 29.55 -169.99 -5.02 14.23 16 10 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.46 9.63 6.58 -13.05 -0.09 9.54 16 14 O -0.56 -13.10 11.84 5.14 0.06 -13.04 16 15 C -0.17 -2.66 8.95 -37.53 -0.34 -2.99 16 16 C -0.09 -1.22 9.81 -37.13 -0.36 -1.58 16 17 C -0.01 -0.16 4.52 -105.06 -0.48 -0.64 16 18 C -0.03 -0.45 6.58 -39.10 -0.26 -0.71 16 19 C -0.09 -1.33 9.38 -39.65 -0.37 -1.70 16 20 C -0.19 -2.79 5.46 -104.50 -0.57 -3.36 16 21 C 0.51 7.17 3.36 36.01 0.12 7.29 16 22 F -0.18 -2.46 17.30 2.25 0.04 -2.42 16 23 F -0.18 -2.65 16.45 2.25 0.04 -2.61 16 24 F -0.18 -2.55 16.45 2.25 0.04 -2.51 16 25 C -0.09 -1.22 9.38 -39.65 -0.37 -1.59 16 26 C -0.11 -1.60 9.80 -39.10 -0.38 -1.98 16 27 H 0.14 2.60 6.48 -51.92 -0.34 2.26 16 28 H 0.08 1.11 6.50 -51.93 -0.34 0.78 16 29 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.12 1.69 6.25 -52.49 -0.33 1.36 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.13 2.09 7.07 -52.49 -0.37 1.72 16 33 H 0.13 1.81 7.59 -52.49 -0.40 1.41 16 34 H 0.13 1.48 7.59 -52.48 -0.40 1.08 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -28.64 322.37 -5.21 -33.84 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.54 Total: 3.24 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -3.63 Total: 4.63 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.96 Total: -40.21 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.06 Total: -13.04 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 0.11 Total: -7.55 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.64 -5.21 -33.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491364202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.360 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds