Wall clock time and date at job start Tue Mar 31 2020 14:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47351 * 36.40185 * 3 2 1 5 5 C 1.36713 * 120.00051 * 270.61763 * 4 3 2 6 6 H 1.07998 * 120.00113 * 145.33502 * 5 4 3 7 7 C 1.39132 * 120.00026 * 325.33739 * 5 4 3 8 8 N 1.31323 * 119.99842 * 153.72876 * 7 5 4 9 9 Si 1.86797 * 119.99984 * 333.72827 * 7 5 4 10 10 H 1.48500 * 109.46981 * 94.99486 * 9 7 5 11 11 H 1.48495 * 109.47432 * 214.99669 * 9 7 5 12 12 H 1.48505 * 109.47150 * 334.99979 * 9 7 5 13 13 C 1.34774 * 119.99922 * 90.61978 * 4 3 2 14 14 O 1.21765 * 120.00076 * 180.02562 * 13 4 3 15 15 C 1.46232 * 120.00140 * 359.97438 * 13 4 3 16 16 C 1.34980 * 119.99695 * 180.02562 * 15 13 4 17 17 C 1.47145 * 119.99656 * 180.27629 * 16 15 13 18 18 C 1.39884 * 120.17064 * 359.44743 * 17 16 15 19 19 C 1.37877 * 119.81732 * 179.78981 * 18 17 16 20 20 C 1.38411 * 120.17701 * 0.48566 * 19 18 17 21 21 C 1.50702 * 119.82670 * 179.76346 * 20 19 18 22 22 F 1.39898 * 109.47092 * 269.98529 * 21 20 19 23 23 F 1.39903 * 109.46808 * 29.98130 * 21 20 19 24 24 F 1.39897 * 109.47351 * 149.98217 * 21 20 19 25 25 C 1.38413 * 120.35324 * 359.74758 * 20 19 18 26 26 C 1.37881 * 120.17296 * 0.02562 * 25 20 19 27 27 H 1.09003 * 109.47302 * 276.39901 * 3 2 1 28 28 H 1.09005 * 109.47036 * 156.40233 * 3 2 1 29 29 H 0.96994 * 119.99608 * 179.97438 * 8 7 5 30 30 H 1.07999 * 119.99686 * 0.02562 * 15 13 4 31 31 H 1.08000 * 120.00548 * 359.97438 * 16 15 13 32 32 H 1.08000 * 120.08934 * 0.02589 * 18 17 16 33 33 H 1.08007 * 119.90970 * 180.23337 * 19 18 17 34 34 H 1.07998 * 119.91226 * 179.97438 * 25 20 19 35 35 H 1.07994 * 120.08677 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1108 -0.8196 5 6 3.3133 -2.3354 -0.2517 6 1 3.1235 -3.2348 -0.8188 7 6 3.7781 -2.4231 1.0567 8 7 3.5127 -3.4881 1.7778 9 14 4.7796 -1.0260 1.7878 10 1 3.8817 -0.1158 2.5431 11 1 5.8074 -1.5807 2.7048 12 1 5.4458 -0.2707 0.6964 13 6 3.3334 -0.9260 -2.1335 14 8 3.7393 -1.8499 -2.8149 15 6 3.1014 0.3837 -2.7411 16 6 3.3378 0.5685 -4.0572 17 6 3.1102 1.8881 -4.6673 18 6 2.6379 2.9503 -3.8892 19 6 2.4314 4.1848 -4.4674 20 6 2.6804 4.3719 -5.8160 21 6 2.4468 5.7231 -6.4410 22 9 1.1316 5.7981 -6.9119 23 9 2.6572 6.7220 -5.4844 24 9 3.3347 5.9038 -7.5069 25 6 3.1432 3.3246 -6.5937 26 6 3.3592 2.0852 -6.0295 27 1 2.9715 -0.1137 1.0213 28 1 2.9709 0.9426 -0.4114 29 1 3.8370 -3.5494 2.6898 30 1 2.7410 1.2031 -2.1368 31 1 3.6986 -0.2507 -4.6614 32 1 2.4393 2.8048 -2.8376 33 1 2.0704 5.0070 -3.8673 34 1 3.3347 3.4783 -7.6454 35 1 3.7199 1.2689 -6.6376 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491364203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:53 Heat of formation + Delta-G solvation = -109.919855 kcal Electronic energy + Delta-G solvation = -25659.153078 eV Core-core repulsion = 21208.059424 eV Total energy + Delta-G solvation = -4451.093653 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.16754 -48.68205 -48.63894 -40.96468 -40.27888 -37.94335 -36.54062 -35.35761 -34.22310 -32.25985 -31.53746 -29.45472 -28.05176 -26.51913 -24.27487 -23.76017 -22.02406 -20.44742 -19.91522 -19.55302 -19.47521 -19.29457 -18.60724 -18.17320 -17.37163 -16.46563 -16.29945 -15.81449 -15.71468 -15.56209 -15.48878 -15.31387 -15.18726 -15.08532 -14.87587 -14.79436 -14.63306 -14.40704 -14.33031 -14.12800 -13.98896 -13.82372 -13.63059 -13.30568 -12.93454 -12.69296 -12.42315 -12.20473 -12.00008 -11.78012 -11.49531 -11.13323 -10.57682 -10.09176 -10.05457 -9.45737 -8.55906 -6.15133 -0.70591 0.29595 0.79007 1.24578 1.40435 1.51389 1.53924 1.65362 1.73492 2.18547 2.26589 2.65390 2.69692 2.73419 2.82709 3.02047 3.24268 3.42263 3.55472 3.72687 3.85206 3.96109 4.11445 4.15824 4.26374 4.34536 4.36650 4.65299 4.89628 5.03859 5.06940 5.15885 5.26729 5.53131 5.56654 5.71594 6.01945 6.40811 6.49494 6.85012 7.14713 7.71747 8.60739 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021720 B = 0.002693 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.823252 B =10393.479921 C =10702.215193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.220 3.780 3 C 0.175 3.825 4 N -0.458 5.458 5 C -0.349 4.349 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.896 5.896 9 Si 0.927 3.073 10 H -0.223 1.223 11 H -0.285 1.285 12 H -0.232 1.232 13 C 0.489 3.511 14 O -0.606 6.606 15 C -0.187 4.187 16 C -0.040 4.040 17 C -0.038 4.038 18 C -0.111 4.111 19 C -0.072 4.072 20 C -0.191 4.191 21 C 0.512 3.488 22 F -0.182 7.182 23 F -0.179 7.179 24 F -0.179 7.179 25 C -0.073 4.073 26 C -0.103 4.103 27 H 0.114 0.886 28 H 0.176 0.824 29 H 0.284 0.716 30 H 0.162 0.838 31 H 0.127 0.873 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 22.862 -11.945 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.099 4.099 3 C 0.049 3.951 4 N -0.179 5.179 5 C -0.477 4.477 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.531 5.531 9 Si 0.747 3.253 10 H -0.147 1.147 11 H -0.212 1.212 12 H -0.155 1.155 13 C 0.282 3.718 14 O -0.492 6.492 15 C -0.208 4.208 16 C -0.061 4.061 17 C -0.039 4.039 18 C -0.129 4.129 19 C -0.089 4.089 20 C -0.193 4.193 21 C 0.458 3.542 22 F -0.163 7.163 23 F -0.160 7.160 24 F -0.160 7.160 25 C -0.091 4.091 26 C -0.120 4.120 27 H 0.131 0.869 28 H 0.193 0.807 29 H 0.094 0.906 30 H 0.179 0.821 31 H 0.145 0.855 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.369 22.289 -12.098 25.363 hybrid contribution 0.637 -0.467 0.451 0.909 sum 1.006 21.822 -11.647 24.756 Atomic orbital electron populations 1.81084 1.14130 1.09564 1.09719 1.30087 0.95832 0.91843 0.92088 1.20021 0.80371 0.94517 1.00170 1.43471 1.56726 1.09873 1.07813 1.18585 1.47378 0.83861 0.97847 0.93539 1.26293 0.96161 1.00769 0.95701 1.69879 1.40566 1.32854 1.09775 0.86163 0.79813 0.79441 0.79855 1.14710 1.21179 1.15491 1.18953 0.80708 0.89669 0.82426 1.90686 1.50566 1.45894 1.62011 1.23183 1.04643 0.95945 0.97003 1.22325 0.93965 0.95297 0.94490 1.19303 0.97616 0.92585 0.94355 1.21678 0.98236 0.91400 1.01549 1.21082 0.96493 0.98498 0.92873 1.20208 1.09708 0.92762 0.96589 1.18323 0.73869 0.85933 0.76112 1.93224 1.37218 1.96826 1.89079 1.93191 1.94606 1.64252 1.63941 1.93187 1.68709 1.96044 1.58077 1.21072 0.95611 0.91404 1.00976 1.21587 0.98869 0.97753 0.93839 0.86856 0.80704 0.90568 0.82113 0.85482 0.82488 0.82706 0.82784 0.82729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.91 18.54 20.01 0.37 -17.54 16 2 C 0.22 7.62 15.76 89.44 1.41 9.03 16 3 C 0.17 5.43 4.49 84.57 0.38 5.81 16 4 N -0.46 -19.71 2.17 -650.45 -1.41 -21.12 16 5 C -0.35 -18.93 9.37 84.15 0.79 -18.14 16 6 H 0.05 3.04 7.85 -2.91 -0.02 3.02 16 7 C 0.02 0.78 5.25 84.98 0.45 1.23 16 8 N -0.90 -49.84 13.95 21.69 0.30 -49.54 16 9 Si 0.93 34.46 25.22 68.60 1.73 36.19 16 10 H -0.22 -6.71 6.60 99.48 0.66 -6.05 16 11 H -0.29 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.23 -7.85 7.11 99.48 0.71 -7.14 16 13 C 0.49 20.41 7.55 86.32 0.65 21.06 16 14 O -0.61 -31.30 16.06 -4.56 -0.07 -31.38 16 15 C -0.19 -5.24 8.61 23.60 0.20 -5.03 16 16 C -0.04 -1.00 9.46 23.86 0.23 -0.78 16 17 C -0.04 -0.73 5.87 -20.14 -0.12 -0.85 16 18 C -0.11 -1.75 9.41 22.58 0.21 -1.54 16 19 C -0.07 -1.05 9.38 22.23 0.21 -0.84 16 20 C -0.19 -3.02 5.46 -19.78 -0.11 -3.12 16 21 C 0.51 8.29 3.36 71.24 0.24 8.52 16 22 F -0.18 -3.26 17.30 44.97 0.78 -2.48 16 23 F -0.18 -2.96 16.45 44.97 0.74 -2.22 16 24 F -0.18 -2.95 16.45 44.97 0.74 -2.21 16 25 C -0.07 -1.06 9.38 22.23 0.21 -0.85 16 26 C -0.10 -1.64 9.80 22.58 0.22 -1.42 16 27 H 0.11 3.54 3.15 -2.39 -0.01 3.53 16 28 H 0.18 3.19 6.06 -2.38 -0.01 3.18 16 29 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.16 3.05 4.21 -2.91 -0.01 3.04 16 31 H 0.13 3.50 7.52 -2.91 -0.02 3.48 16 32 H 0.16 1.83 6.17 -2.91 -0.02 1.81 16 33 H 0.16 1.67 7.59 -2.91 -0.02 1.65 16 34 H 0.15 1.65 7.59 -2.91 -0.02 1.63 16 35 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -73.10 326.59 9.28 -63.82 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.14 Total: 13.39 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 4.97 Total: 13.09 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -0.73 Total: -88.20 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.07 Total: -31.38 kcal Atomic # 9 Polarization: -9.17 SS G_CDS: 2.26 Total: -6.92 kcal Atomic # 14 Polarization: 34.46 SS G_CDS: 1.73 Total: 36.19 kcal Total: -73.10 9.28 -63.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491364203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.099 kcal (2) G-P(sol) polarization free energy of solvation -73.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds