Wall clock time and date at job start Tue Mar 31 2020 13:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31570 * 122.23280 * 2 1 4 4 C 1.29980 * 117.14062 * 180.26812 * 3 2 1 5 5 N 1.38742 * 125.36815 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99783 * 179.97438 * 5 4 3 7 7 O 1.21631 * 120.00019 * 359.97438 * 6 5 4 8 8 C 1.47030 * 119.99932 * 180.02562 * 6 5 4 9 9 C 1.33037 * 120.00316 * 179.97438 * 8 6 5 10 10 C 1.50702 * 120.00315 * 179.97438 * 9 8 6 11 11 C 1.53783 * 113.61516 * 219.13591 * 10 9 8 12 12 C 1.53956 * 87.02039 * 220.04891 * 11 10 9 13 13 C 1.53780 * 87.11079 * 25.36203 * 12 11 10 14 14 S 1.76140 * 109.26428 * 0.02562 * 4 3 2 15 15 C 1.34685 * 122.23053 * 180.28576 * 2 1 3 16 16 S 1.76202 * 125.92628 * 359.76424 * 15 2 1 17 17 C 1.76205 * 99.99722 * 179.97438 * 16 15 2 18 18 H 1.08003 * 120.00132 * 0.02562 * 17 16 15 19 19 C 1.38431 * 119.99685 * 179.97438 * 17 16 15 20 20 N 1.31808 * 119.99552 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00280 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47390 * 89.99520 * 21 19 17 23 23 H 1.48500 * 109.47284 * 209.99958 * 21 19 17 24 24 H 1.48501 * 109.47173 * 329.99520 * 21 19 17 25 25 H 1.09000 * 109.46542 * 269.71184 * 1 2 3 26 26 H 1.08993 * 109.46698 * 29.71454 * 1 2 3 27 27 H 1.08998 * 109.46997 * 149.71770 * 1 2 3 28 28 H 0.96999 * 119.99900 * 359.95501 * 5 4 3 29 29 H 1.08006 * 119.99660 * 359.97438 * 8 6 5 30 30 H 1.08006 * 120.00025 * 359.97438 * 9 8 6 31 31 H 1.09001 * 112.84869 * 350.33292 * 10 9 8 32 32 H 1.09005 * 113.61164 * 334.56538 * 11 10 9 33 33 H 1.09001 * 113.61410 * 105.46438 * 11 10 9 34 34 H 1.08997 * 113.53054 * 270.81149 * 12 11 10 35 35 H 1.08991 * 113.74361 * 139.94395 * 12 11 10 36 36 H 1.08997 * 113.61485 * 220.09287 * 13 12 11 37 37 H 1.08999 * 113.61560 * 89.18673 * 13 12 11 38 38 H 0.96997 * 119.99924 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1129 0.0000 4 6 3.5034 0.9976 -0.0054 5 7 4.4038 2.0532 -0.0058 6 6 5.7291 1.8085 -0.0112 7 8 6.1359 0.6622 -0.0153 8 6 6.6833 2.9271 -0.0111 9 6 7.9915 2.6856 -0.0159 10 6 8.9695 3.8322 -0.0164 11 6 10.1979 3.5938 -0.9103 12 6 11.0341 4.2563 0.1998 13 6 9.9338 3.8199 1.1815 14 16 3.9347 -0.7102 -0.0121 15 6 2.2253 -1.1393 -0.0057 16 16 1.5698 -2.7748 -0.0080 17 6 3.0667 -3.7044 -0.0166 18 1 4.0188 -3.1947 -0.0183 19 6 3.0221 -5.0880 -0.0199 20 7 4.1419 -5.7833 -0.0258 21 14 1.3753 -5.9695 -0.0161 22 1 0.9336 -6.1995 -1.4151 23 1 1.5136 -7.2739 0.6800 24 1 0.3692 -5.1360 0.6899 25 1 -0.3632 -0.0052 1.0277 26 1 -0.3632 0.8925 -0.5094 27 1 -0.3633 -0.8874 -0.5182 28 1 4.0793 2.9673 -0.0025 29 1 6.3220 3.9449 -0.0071 30 1 8.3528 1.6678 -0.0195 31 1 8.4902 4.7972 -0.1812 32 1 10.4299 2.5395 -1.0613 33 1 10.1777 4.1613 -1.8407 34 1 11.1203 5.3376 0.0931 35 1 11.9937 3.7704 0.3755 36 1 9.7006 4.5698 1.9374 37 1 10.0934 2.8276 1.6033 38 1 4.1107 -6.7527 -0.0286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492051967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:19 Heat of formation + Delta-G solvation = 32.483128 kcal Electronic energy + Delta-G solvation = -21187.793325 eV Core-core repulsion = 17862.928291 eV Total energy + Delta-G solvation = -3324.865034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.16992 -39.18632 -38.55137 -34.77545 -33.28612 -32.74141 -30.59382 -27.24017 -26.68205 -25.97018 -25.88106 -23.97315 -21.72800 -20.65785 -19.90384 -19.33766 -18.01810 -17.71351 -16.83498 -16.04111 -15.65514 -15.37837 -15.34204 -15.17738 -14.54361 -14.01040 -13.96610 -13.34066 -13.19208 -12.96435 -12.81361 -12.75293 -12.18202 -12.01482 -11.99543 -11.56396 -11.33044 -11.32012 -11.13030 -10.94832 -10.89658 -10.65316 -10.59756 -10.12509 -9.89843 -9.60655 -9.43807 -9.14929 -8.83203 -8.75440 -7.85797 -6.70398 -6.54228 -4.27181 0.96344 1.54035 1.82718 2.49409 2.79780 2.97838 3.00749 3.11451 3.21166 3.39510 3.61865 4.04309 4.22144 4.26554 4.33452 4.50375 4.53749 4.65258 4.85332 4.85622 5.04410 5.15901 5.31129 5.36369 5.39614 5.55238 5.58395 5.67466 5.87610 6.00363 6.03163 6.11608 6.14125 6.23006 6.37714 6.42891 6.90348 7.19844 7.68781 8.01366 8.25594 8.44944 8.85541 10.53711 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.002855 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.537193 B = 9804.651602 C =11259.414118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.032 3.968 3 N -0.483 5.483 4 C 0.194 3.806 5 N -0.612 5.612 6 C 0.537 3.463 7 O -0.508 6.508 8 C -0.210 4.210 9 C -0.044 4.044 10 C -0.095 4.095 11 C -0.132 4.132 12 C -0.143 4.143 13 C -0.130 4.130 14 S 0.233 5.767 15 C -0.241 4.241 16 S 0.053 5.947 17 C -0.544 4.544 18 H 0.105 0.895 19 C 0.101 3.899 20 N -0.858 5.858 21 Si 0.852 3.148 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.236 1.236 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.415 0.585 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 19.550 0.238 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 N -0.205 5.205 4 C -0.177 4.177 5 N -0.260 5.260 6 C 0.326 3.674 7 O -0.385 6.385 8 C -0.231 4.231 9 C -0.064 4.064 10 C -0.114 4.114 11 C -0.169 4.169 12 C -0.181 4.181 13 C -0.167 4.167 14 S 0.479 5.521 15 C -0.477 4.477 16 S 0.300 5.700 17 C -0.692 4.692 18 H 0.122 0.878 19 C -0.110 4.110 20 N -0.491 5.491 21 Si 0.676 3.324 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.160 1.160 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.253 0.747 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.935 17.954 0.235 19.248 hybrid contribution -0.369 0.458 -0.014 0.589 sum 6.565 18.413 0.221 19.549 Atomic orbital electron populations 1.20145 0.88011 1.02187 1.01911 1.19115 0.96778 0.84619 1.10499 1.65880 1.02868 1.32171 1.19534 1.23973 0.90029 0.93541 1.10125 1.42310 1.04456 1.08041 1.71167 1.18807 0.81427 0.90217 0.76973 1.90811 1.77132 1.22279 1.48251 1.22325 0.93638 0.97745 1.09402 1.23790 0.93455 1.00330 0.88798 1.21854 0.93844 0.97179 0.98475 1.22965 0.94727 1.01884 0.97343 1.22879 0.97957 1.00778 0.96476 1.22903 0.95339 1.02507 0.95965 1.86187 1.00470 0.94397 1.71056 1.28180 1.01814 1.04457 1.13269 1.82445 1.13488 0.89199 1.84884 1.22664 0.92409 0.94475 1.59694 0.87768 1.24744 0.97378 0.96233 0.92642 1.70010 1.26461 1.07653 1.45003 0.86810 0.83896 0.81346 0.80366 1.18570 1.18995 1.15978 0.91712 0.91723 0.91099 0.74710 0.85153 0.85073 0.88230 0.89452 0.91035 0.90092 0.91124 0.91028 0.89478 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.01 0.36 -0.70 16 2 C 0.03 0.66 6.73 -83.96 -0.57 0.09 16 3 N -0.48 -9.63 10.55 -9.81 -0.10 -9.73 16 4 C 0.19 3.76 8.39 -87.31 -0.73 3.03 16 5 N -0.61 -9.10 5.39 -12.89 -0.07 -9.17 16 6 C 0.54 7.96 7.72 -12.70 -0.10 7.86 16 7 O -0.51 -9.67 13.73 5.25 0.07 -9.60 16 8 C -0.21 -2.11 9.66 -37.83 -0.37 -2.47 16 9 C -0.04 -0.41 8.79 -36.11 -0.32 -0.73 16 10 C -0.10 -0.65 4.01 -90.96 -0.36 -1.01 16 11 C -0.13 -0.84 7.64 -25.83 -0.20 -1.04 16 12 C -0.14 -0.81 8.09 -25.83 -0.21 -1.02 16 13 C -0.13 -0.83 7.63 -25.92 -0.20 -1.02 16 14 S 0.23 5.29 18.34 -107.50 -1.97 3.32 16 15 C -0.24 -5.55 6.67 29.47 0.20 -5.35 16 16 S 0.05 1.27 18.71 -107.50 -2.01 -0.74 16 17 C -0.54 -15.30 9.80 30.80 0.30 -15.00 16 18 H 0.10 3.14 6.21 -52.48 -0.33 2.82 16 19 C 0.10 2.82 5.49 -17.49 -0.10 2.73 16 20 N -0.86 -24.94 13.98 55.47 0.78 -24.16 16 21 Si 0.85 19.82 27.73 -169.99 -4.71 15.10 16 22 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.24 -5.25 6.73 56.52 0.38 -4.87 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.17 7.38 -51.93 -0.38 0.79 16 28 H 0.42 4.61 8.80 -40.82 -0.36 4.25 16 29 H 0.13 0.88 7.99 -52.48 -0.42 0.46 16 30 H 0.13 1.44 7.49 -52.48 -0.39 1.05 16 31 H 0.10 0.56 8.03 -51.93 -0.42 0.15 16 32 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.28 7.37 8.32 -40.82 -0.34 7.03 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -32.54 349.28 -9.87 -42.41 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.83 Total: 1.93 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -2.28 Total: -14.63 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.60 Total: -43.06 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.71 Total: 15.10 kcal Atomic # 16 Polarization: 6.56 SS G_CDS: -3.98 Total: 2.58 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.54 -9.87 -42.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492051967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.896 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds