Wall clock time and date at job start Tue Mar 31 2020 13:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31570 * 122.23280 * 2 1 4 4 C 1.29980 * 117.14062 * 180.26812 * 3 2 1 5 5 N 1.38742 * 125.36815 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99783 * 179.97438 * 5 4 3 7 7 O 1.21631 * 120.00019 * 359.97438 * 6 5 4 8 8 C 1.47030 * 119.99932 * 180.02562 * 6 5 4 9 9 C 1.33037 * 120.00316 * 179.97438 * 8 6 5 10 10 C 1.50702 * 120.00315 * 179.97438 * 9 8 6 11 11 C 1.53783 * 113.61516 * 219.13591 * 10 9 8 12 12 C 1.53956 * 87.02039 * 220.04891 * 11 10 9 13 13 C 1.53780 * 87.11079 * 25.36203 * 12 11 10 14 14 S 1.76140 * 109.26428 * 0.02562 * 4 3 2 15 15 C 1.34685 * 122.23053 * 180.28576 * 2 1 3 16 16 S 1.76202 * 125.92628 * 359.76424 * 15 2 1 17 17 C 1.76205 * 99.99722 * 179.97438 * 16 15 2 18 18 H 1.08003 * 120.00132 * 0.02562 * 17 16 15 19 19 C 1.38431 * 119.99685 * 179.97438 * 17 16 15 20 20 N 1.31808 * 119.99552 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00280 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47390 * 89.99520 * 21 19 17 23 23 H 1.48500 * 109.47284 * 209.99958 * 21 19 17 24 24 H 1.48501 * 109.47173 * 329.99520 * 21 19 17 25 25 H 1.09000 * 109.46542 * 269.71184 * 1 2 3 26 26 H 1.08993 * 109.46698 * 29.71454 * 1 2 3 27 27 H 1.08998 * 109.46997 * 149.71770 * 1 2 3 28 28 H 0.96999 * 119.99900 * 359.95501 * 5 4 3 29 29 H 1.08006 * 119.99660 * 359.97438 * 8 6 5 30 30 H 1.08006 * 120.00025 * 359.97438 * 9 8 6 31 31 H 1.09001 * 112.84869 * 350.33292 * 10 9 8 32 32 H 1.09005 * 113.61164 * 334.56538 * 11 10 9 33 33 H 1.09001 * 113.61410 * 105.46438 * 11 10 9 34 34 H 1.08997 * 113.53054 * 270.81149 * 12 11 10 35 35 H 1.08991 * 113.74361 * 139.94395 * 12 11 10 36 36 H 1.08997 * 113.61485 * 220.09287 * 13 12 11 37 37 H 1.08999 * 113.61560 * 89.18673 * 13 12 11 38 38 H 0.96997 * 119.99924 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1129 0.0000 4 6 3.5034 0.9976 -0.0054 5 7 4.4038 2.0532 -0.0058 6 6 5.7291 1.8085 -0.0112 7 8 6.1359 0.6622 -0.0153 8 6 6.6833 2.9271 -0.0111 9 6 7.9915 2.6856 -0.0159 10 6 8.9695 3.8322 -0.0164 11 6 10.1979 3.5938 -0.9103 12 6 11.0341 4.2563 0.1998 13 6 9.9338 3.8199 1.1815 14 16 3.9347 -0.7102 -0.0121 15 6 2.2253 -1.1393 -0.0057 16 16 1.5698 -2.7748 -0.0080 17 6 3.0667 -3.7044 -0.0166 18 1 4.0188 -3.1947 -0.0183 19 6 3.0221 -5.0880 -0.0199 20 7 4.1419 -5.7833 -0.0258 21 14 1.3753 -5.9695 -0.0161 22 1 0.9336 -6.1995 -1.4151 23 1 1.5136 -7.2739 0.6800 24 1 0.3692 -5.1360 0.6899 25 1 -0.3632 -0.0052 1.0277 26 1 -0.3632 0.8925 -0.5094 27 1 -0.3633 -0.8874 -0.5182 28 1 4.0793 2.9673 -0.0025 29 1 6.3220 3.9449 -0.0071 30 1 8.3528 1.6678 -0.0195 31 1 8.4902 4.7972 -0.1812 32 1 10.4299 2.5395 -1.0613 33 1 10.1777 4.1613 -1.8407 34 1 11.1203 5.3376 0.0931 35 1 11.9937 3.7704 0.3755 36 1 9.7006 4.5698 1.9374 37 1 10.0934 2.8276 1.6033 38 1 4.1107 -6.7527 -0.0286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492051967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:18 Heat of formation + Delta-G solvation = 12.309495 kcal Electronic energy + Delta-G solvation = -21188.668119 eV Core-core repulsion = 17862.928291 eV Total energy + Delta-G solvation = -3325.739828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48303 -40.25382 -39.67311 -36.20177 -34.83264 -34.15604 -32.07821 -28.83273 -27.92903 -27.61101 -26.47177 -25.16381 -22.97899 -22.03749 -20.72519 -20.47379 -19.58225 -19.22720 -18.20389 -17.50256 -17.23482 -16.79093 -16.51774 -16.27293 -15.70638 -15.50725 -15.29549 -14.99530 -14.50548 -13.96633 -13.64029 -13.51546 -13.45961 -13.39855 -13.33251 -13.17021 -13.11765 -12.72712 -12.41858 -12.16424 -11.93883 -11.71288 -11.47379 -11.44328 -11.31090 -11.18899 -10.87695 -10.61994 -10.57536 -10.36962 -9.61989 -8.62548 -8.53501 -6.35570 -0.38724 0.14153 0.27604 0.75649 1.04865 1.28340 1.38942 1.53553 1.68058 1.68502 2.13467 2.19466 2.49923 2.76201 3.42222 3.69554 3.72987 3.81986 3.94276 4.02563 4.14055 4.35850 4.38316 4.66204 4.79766 4.84240 4.86756 4.87442 4.91898 5.03070 5.08074 5.10853 5.13275 5.29900 5.40891 5.43521 5.59997 5.62836 5.99856 6.06891 6.75296 6.75849 6.82619 8.50310 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.002855 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.537193 B = 9804.651602 C =11259.414118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.485 5.485 4 C 0.232 3.768 5 N -0.598 5.598 6 C 0.533 3.467 7 O -0.554 6.554 8 C -0.210 4.210 9 C -0.033 4.033 10 C -0.091 4.091 11 C -0.137 4.137 12 C -0.137 4.137 13 C -0.133 4.133 14 S 0.161 5.839 15 C -0.278 4.278 16 S 0.062 5.938 17 C -0.567 4.567 18 H 0.066 0.934 19 C 0.048 3.952 20 N -0.908 5.908 21 Si 0.915 3.085 22 H -0.252 1.252 23 H -0.253 1.253 24 H -0.219 1.219 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.439 0.561 29 H 0.177 0.823 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.544 23.035 0.300 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 N -0.208 5.208 4 C -0.140 4.140 5 N -0.249 5.249 6 C 0.325 3.675 7 O -0.433 6.433 8 C -0.231 4.231 9 C -0.053 4.053 10 C -0.109 4.109 11 C -0.175 4.175 12 C -0.175 4.175 13 C -0.170 4.170 14 S 0.407 5.593 15 C -0.513 4.513 16 S 0.307 5.693 17 C -0.716 4.716 18 H 0.084 0.916 19 C -0.159 4.159 20 N -0.544 5.544 21 Si 0.734 3.266 22 H -0.176 1.176 23 H -0.177 1.177 24 H -0.142 1.142 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.281 0.719 29 H 0.194 0.806 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.568 21.518 0.299 22.228 hybrid contribution 0.287 -0.279 -0.037 0.402 sum 5.855 21.239 0.262 22.033 Atomic orbital electron populations 1.20325 0.84979 1.03587 1.03519 1.19872 0.98718 0.83900 1.06345 1.66109 1.02441 1.31241 1.20969 1.24248 0.90415 0.93246 1.06087 1.42455 1.03968 1.08003 1.70468 1.19810 0.81666 0.90876 0.75164 1.90818 1.77649 1.24745 1.50055 1.22393 0.92348 0.97737 1.10607 1.23970 0.94056 1.00412 0.86857 1.21976 0.93180 0.96894 0.98809 1.22997 0.94850 1.01508 0.98099 1.22881 0.97576 1.01602 0.95394 1.22923 0.95577 1.02290 0.96237 1.86571 1.02184 0.97925 1.72578 1.28128 1.01522 1.04582 1.17084 1.81854 1.10757 0.89355 1.87373 1.22847 0.93256 0.95463 1.59996 0.91551 1.25747 1.01452 0.96846 0.91882 1.70119 1.29117 1.08265 1.46869 0.85880 0.79157 0.80475 0.81081 1.17613 1.17726 1.14209 0.89820 0.89241 0.90769 0.71935 0.80616 0.87618 0.85730 0.90710 0.90077 0.88550 0.91160 0.89854 0.90752 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.00 10.02 71.24 0.71 -1.28 16 2 C 0.05 2.12 6.73 41.78 0.28 2.40 16 3 N -0.49 -18.39 10.55 -184.96 -1.95 -20.34 16 4 C 0.23 8.83 8.39 179.19 1.50 10.33 16 5 N -0.60 -16.66 5.39 -312.95 -1.69 -18.34 16 6 C 0.53 15.33 7.72 86.55 0.67 15.99 16 7 O -0.55 -21.80 13.73 -4.13 -0.06 -21.85 16 8 C -0.21 -3.69 9.66 23.41 0.23 -3.46 16 9 C -0.03 -0.57 8.79 24.52 0.22 -0.36 16 10 C -0.09 -0.99 4.01 -11.01 -0.04 -1.04 16 11 C -0.14 -1.52 7.64 31.18 0.24 -1.28 16 12 C -0.14 -1.24 8.09 31.18 0.25 -0.99 16 13 C -0.13 -1.43 7.63 31.12 0.24 -1.19 16 14 S 0.16 7.64 18.34 -56.49 -1.04 6.60 16 15 C -0.28 -12.97 6.67 67.00 0.45 -12.53 16 16 S 0.06 3.02 18.71 -56.49 -1.06 1.96 16 17 C -0.57 -33.52 9.80 67.87 0.67 -32.85 16 18 H 0.07 4.32 6.21 -2.91 -0.02 4.31 16 19 C 0.05 2.74 5.49 84.74 0.47 3.20 16 20 N -0.91 -55.36 13.98 21.59 0.30 -55.06 16 21 Si 0.92 41.31 27.73 68.60 1.90 43.21 16 22 H -0.25 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.25 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.22 -9.20 6.73 99.48 0.67 -8.53 16 25 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.07 2.27 7.38 -2.39 -0.02 2.25 16 28 H 0.44 8.20 8.80 -92.71 -0.82 7.38 16 29 H 0.18 1.48 7.99 -2.91 -0.02 1.46 16 30 H 0.11 2.41 7.49 -2.91 -0.02 2.39 16 31 H 0.12 0.83 8.03 -2.39 -0.02 0.82 16 32 H 0.07 1.01 8.09 -2.38 -0.02 0.99 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 38 H 0.28 15.66 8.32 -92.71 -0.77 14.89 16 Total: -1.00 -75.53 349.28 2.53 -73.00 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.24 Total: 13.86 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 5.87 Total: -23.04 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -3.34 Total: -93.75 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.06 Total: -21.85 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.90 Total: 43.21 kcal Atomic # 16 Polarization: 10.66 SS G_CDS: -2.09 Total: 8.57 kcal Total: -75.53 2.53 -73.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492051967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.309 kcal (2) G-P(sol) polarization free energy of solvation -75.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds