Wall clock time and date at job start Tue Mar 31 2020 13:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31571 * 122.22484 * 2 1 4 4 C 1.29987 * 117.12944 * 180.26890 * 3 2 1 5 5 N 1.38735 * 125.36476 * 180.02562 * 4 3 2 6 6 C 1.34787 * 119.99698 * 179.97438 * 5 4 3 7 7 O 1.21629 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.47030 * 119.99441 * 180.02562 * 6 5 4 9 9 C 1.33042 * 119.99561 * 173.62778 * 8 6 5 10 10 C 1.50704 * 120.00215 * 351.17779 * 9 8 6 11 11 C 1.53780 * 113.61372 * 208.94950 * 10 9 8 12 12 C 1.53961 * 87.02025 * 220.04556 * 11 10 9 13 13 C 1.53775 * 113.61837 * 111.33914 * 10 9 8 14 14 S 1.76147 * 109.26851 * 359.97438 * 4 3 2 15 15 C 1.34668 * 122.22675 * 180.28029 * 2 1 3 16 16 S 1.76202 * 125.93375 * 359.75651 * 15 2 1 17 17 C 1.76194 * 100.00347 * 179.97438 * 16 15 2 18 18 H 1.07999 * 119.99773 * 0.02562 * 17 16 15 19 19 C 1.38427 * 120.00212 * 179.97438 * 17 16 15 20 20 N 1.31815 * 120.00014 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00126 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47070 * 120.00293 * 21 19 17 24 24 H 1.48503 * 109.47288 * 240.00059 * 21 19 17 25 25 H 1.08994 * 109.47260 * 269.71857 * 1 2 3 26 26 H 1.09005 * 109.46757 * 29.71621 * 1 2 3 27 27 H 1.08995 * 109.47219 * 149.71118 * 1 2 3 28 28 H 0.96997 * 120.00374 * 359.97438 * 5 4 3 29 29 H 1.07992 * 120.00383 * 353.62511 * 8 6 5 30 30 H 1.08007 * 120.00247 * 171.17762 * 9 8 6 31 31 H 1.09003 * 112.84620 * 340.14263 * 10 9 8 32 32 H 1.09000 * 113.61456 * 334.56244 * 11 10 9 33 33 H 1.09001 * 113.61470 * 105.46761 * 11 10 9 34 34 H 1.09000 * 113.53508 * 270.81315 * 12 11 10 35 35 H 1.08992 * 113.74384 * 139.94478 * 12 11 10 36 36 H 1.08994 * 113.61595 * 254.53322 * 13 10 9 37 37 H 1.09009 * 113.61281 * 25.43099 * 13 10 9 38 38 H 0.96995 * 119.99907 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2087 1.1130 0.0000 4 6 3.5034 0.9976 -0.0054 5 7 4.4037 2.0532 -0.0059 6 6 5.7291 1.8084 -0.0113 7 8 6.1359 0.6622 -0.0153 8 6 6.6832 2.9271 -0.0111 9 6 7.9865 2.6898 0.1114 10 6 8.4715 1.3033 0.4484 11 6 9.8001 1.2867 1.2227 12 6 10.1974 0.0777 0.3561 13 6 9.2225 0.6162 -0.7043 14 16 3.9347 -0.7102 -0.0107 15 6 2.2252 -1.1392 -0.0056 16 16 1.5697 -2.7748 -0.0075 17 6 3.0665 -3.7043 -0.0161 18 1 4.0187 -3.1946 -0.0181 19 6 3.0220 -5.0879 -0.0193 20 7 1.8599 -5.7100 -0.0163 21 14 4.6089 -6.0734 -0.0276 22 1 5.7680 -5.1452 -0.0292 23 1 4.6647 -6.9322 1.1826 24 1 4.6555 -6.9263 -1.2424 25 1 -0.3633 -0.0050 1.0276 26 1 -0.3633 0.8926 -0.5095 27 1 -0.3633 -0.8873 -0.5183 28 1 4.0793 2.9673 -0.0023 29 1 6.3260 3.9414 -0.1106 30 1 8.6970 3.4908 -0.0305 31 1 7.6969 0.6813 0.8969 32 1 10.4169 2.1687 1.0505 33 1 9.6862 1.0484 2.2802 34 1 9.8955 -0.8799 0.7804 35 1 11.2396 0.0897 0.0374 36 1 8.6431 -0.1624 -1.2003 37 1 9.6811 1.3148 -1.4044 38 1 1.8288 -6.6794 -0.0182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492051968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:21 Heat of formation + Delta-G solvation = 40.819075 kcal Electronic energy + Delta-G solvation = -21920.667708 eV Core-core repulsion = 18596.164147 eV Total energy + Delta-G solvation = -3324.503560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35868 -38.86591 -38.25610 -34.73112 -33.17289 -32.80679 -30.47819 -27.12418 -26.32504 -25.74605 -25.63682 -24.00070 -21.77432 -20.69911 -19.72985 -19.15105 -17.83104 -17.68998 -16.72843 -15.87367 -15.57053 -15.28507 -15.13499 -15.09004 -14.12582 -13.95049 -13.89621 -13.33209 -13.17861 -12.65874 -12.57838 -12.52685 -12.41800 -12.03513 -11.86101 -11.35708 -11.27466 -11.06664 -10.92214 -10.68566 -10.62896 -10.49659 -10.29109 -10.23482 -9.60251 -9.46087 -9.43277 -9.01823 -8.71114 -8.61708 -7.75835 -6.58841 -6.47300 -4.26027 1.01129 1.61834 1.92608 2.58033 2.99841 3.02377 3.09712 3.10691 3.19060 3.38910 3.70575 3.99180 4.48900 4.55924 4.66631 4.70908 4.83755 4.91762 5.03367 5.05799 5.17647 5.26513 5.56161 5.60881 5.74808 5.80244 5.93438 6.00184 6.03970 6.08275 6.19342 6.24972 6.29455 6.47769 6.50699 6.63597 7.02054 7.26642 7.34761 8.06050 8.07267 8.55383 8.89932 10.47092 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.004488 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.538833 B = 6237.081084 C = 8692.984159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.020 3.980 3 N -0.478 5.478 4 C 0.189 3.811 5 N -0.612 5.612 6 C 0.536 3.464 7 O -0.502 6.502 8 C -0.218 4.218 9 C -0.038 4.038 10 C -0.110 4.110 11 C -0.138 4.138 12 C -0.141 4.141 13 C -0.122 4.122 14 S 0.202 5.798 15 C -0.253 4.253 16 S 0.146 5.854 17 C -0.554 4.554 18 H 0.089 0.911 19 C 0.082 3.918 20 N -0.863 5.863 21 Si 0.923 3.077 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.414 0.586 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 15.532 0.414 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 N -0.199 5.199 4 C -0.182 4.182 5 N -0.260 5.260 6 C 0.325 3.675 7 O -0.379 6.379 8 C -0.239 4.239 9 C -0.058 4.058 10 C -0.128 4.128 11 C -0.175 4.175 12 C -0.179 4.179 13 C -0.159 4.159 14 S 0.446 5.554 15 C -0.490 4.490 16 S 0.396 5.604 17 C -0.703 4.703 18 H 0.107 0.893 19 C -0.129 4.129 20 N -0.497 5.497 21 Si 0.748 3.252 22 H -0.188 1.188 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.251 0.749 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.754 13.915 0.407 17.591 hybrid contribution 1.068 0.619 -0.039 1.235 sum 11.821 14.534 0.369 18.738 Atomic orbital electron populations 1.20117 0.88117 1.02080 1.01769 1.19032 0.96681 0.84633 1.11898 1.65838 1.02873 1.32371 1.18861 1.23780 0.89884 0.93043 1.11457 1.42342 1.04500 1.07996 1.71122 1.18822 0.81319 0.90198 0.77141 1.90690 1.76268 1.22594 1.48396 1.22347 0.93784 0.97786 1.09996 1.23783 0.94932 0.98253 0.88813 1.22435 0.97678 0.94156 0.98528 1.23033 0.96754 0.98614 0.99124 1.22835 0.99096 0.98356 0.97595 1.22729 0.97264 0.99939 0.95964 1.85804 1.01660 0.95389 1.72538 1.28774 1.01438 1.06664 1.12130 1.83071 1.11074 0.84481 1.81770 1.23296 0.93600 0.94018 1.59413 0.89294 1.25023 0.98225 0.96680 0.92986 1.70024 1.24346 1.10219 1.45070 0.86000 0.81398 0.79466 0.78317 1.18787 1.20019 1.20012 0.91901 0.91965 0.91063 0.74871 0.85055 0.85509 0.84662 0.90482 0.91451 0.89965 0.91700 0.90698 0.90676 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.02 36.01 0.36 -0.73 16 2 C 0.02 0.42 6.73 -83.96 -0.57 -0.14 16 3 N -0.48 -9.69 10.55 -9.81 -0.10 -9.80 16 4 C 0.19 3.66 8.39 -87.31 -0.73 2.92 16 5 N -0.61 -8.98 5.39 -12.89 -0.07 -9.05 16 6 C 0.54 7.57 7.60 -12.69 -0.10 7.47 16 7 O -0.50 -8.69 10.65 5.25 0.06 -8.63 16 8 C -0.22 -2.11 10.02 -37.82 -0.38 -2.49 16 9 C -0.04 -0.34 9.29 -36.11 -0.34 -0.68 16 10 C -0.11 -1.22 2.87 -90.96 -0.26 -1.48 16 11 C -0.14 -1.25 7.64 -25.82 -0.20 -1.45 16 12 C -0.14 -1.38 8.09 -25.82 -0.21 -1.59 16 13 C -0.12 -1.32 7.63 -25.92 -0.20 -1.52 16 14 S 0.20 4.45 18.34 -107.50 -1.97 2.47 16 15 C -0.25 -5.89 6.67 29.47 0.20 -5.70 16 16 S 0.15 3.69 20.74 -107.50 -2.23 1.46 16 17 C -0.55 -15.16 9.26 30.80 0.29 -14.87 16 18 H 0.09 2.42 5.97 -52.49 -0.31 2.10 16 19 C 0.08 2.19 5.49 -17.49 -0.10 2.09 16 20 N -0.86 -23.88 13.22 55.47 0.73 -23.15 16 21 Si 0.92 20.72 29.55 -169.99 -5.02 15.69 16 22 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.26 7.38 -51.93 -0.38 0.88 16 28 H 0.41 4.63 8.80 -40.82 -0.36 4.28 16 29 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 31 H 0.14 1.94 5.34 -51.94 -0.28 1.66 16 32 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.70 8.09 -51.92 -0.42 0.27 16 38 H 0.28 7.07 8.32 -40.82 -0.34 6.73 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -31.02 346.44 -10.31 -41.33 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.69 Total: 2.59 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.23 Total: -18.14 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.56 Total: -41.99 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.06 Total: -8.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 8.13 SS G_CDS: -4.20 Total: 3.93 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.02 -10.31 -41.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492051968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.148 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds