Wall clock time and date at job start Tue Mar 31 2020 13:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31571 * 122.22484 * 2 1 4 4 C 1.29987 * 117.12944 * 180.26890 * 3 2 1 5 5 N 1.38735 * 125.36476 * 180.02562 * 4 3 2 6 6 C 1.34787 * 119.99698 * 179.97438 * 5 4 3 7 7 O 1.21629 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.47030 * 119.99441 * 180.02562 * 6 5 4 9 9 C 1.33042 * 119.99561 * 173.62778 * 8 6 5 10 10 C 1.50704 * 120.00215 * 351.17779 * 9 8 6 11 11 C 1.53780 * 113.61372 * 208.94950 * 10 9 8 12 12 C 1.53961 * 87.02025 * 220.04556 * 11 10 9 13 13 C 1.53775 * 113.61837 * 111.33914 * 10 9 8 14 14 S 1.76147 * 109.26851 * 359.97438 * 4 3 2 15 15 C 1.34668 * 122.22675 * 180.28029 * 2 1 3 16 16 S 1.76202 * 125.93375 * 359.75651 * 15 2 1 17 17 C 1.76194 * 100.00347 * 179.97438 * 16 15 2 18 18 H 1.07999 * 119.99773 * 0.02562 * 17 16 15 19 19 C 1.38427 * 120.00212 * 179.97438 * 17 16 15 20 20 N 1.31815 * 120.00014 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00126 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47070 * 120.00293 * 21 19 17 24 24 H 1.48503 * 109.47288 * 240.00059 * 21 19 17 25 25 H 1.08994 * 109.47260 * 269.71857 * 1 2 3 26 26 H 1.09005 * 109.46757 * 29.71621 * 1 2 3 27 27 H 1.08995 * 109.47219 * 149.71118 * 1 2 3 28 28 H 0.96997 * 120.00374 * 359.97438 * 5 4 3 29 29 H 1.07992 * 120.00383 * 353.62511 * 8 6 5 30 30 H 1.08007 * 120.00247 * 171.17762 * 9 8 6 31 31 H 1.09003 * 112.84620 * 340.14263 * 10 9 8 32 32 H 1.09000 * 113.61456 * 334.56244 * 11 10 9 33 33 H 1.09001 * 113.61470 * 105.46761 * 11 10 9 34 34 H 1.09000 * 113.53508 * 270.81315 * 12 11 10 35 35 H 1.08992 * 113.74384 * 139.94478 * 12 11 10 36 36 H 1.08994 * 113.61595 * 254.53322 * 13 10 9 37 37 H 1.09009 * 113.61281 * 25.43099 * 13 10 9 38 38 H 0.96995 * 119.99907 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2087 1.1130 0.0000 4 6 3.5034 0.9976 -0.0054 5 7 4.4037 2.0532 -0.0059 6 6 5.7291 1.8084 -0.0113 7 8 6.1359 0.6622 -0.0153 8 6 6.6832 2.9271 -0.0111 9 6 7.9865 2.6898 0.1114 10 6 8.4715 1.3033 0.4484 11 6 9.8001 1.2867 1.2227 12 6 10.1974 0.0777 0.3561 13 6 9.2225 0.6162 -0.7043 14 16 3.9347 -0.7102 -0.0107 15 6 2.2252 -1.1392 -0.0056 16 16 1.5697 -2.7748 -0.0075 17 6 3.0665 -3.7043 -0.0161 18 1 4.0187 -3.1946 -0.0181 19 6 3.0220 -5.0879 -0.0193 20 7 1.8599 -5.7100 -0.0163 21 14 4.6089 -6.0734 -0.0276 22 1 5.7680 -5.1452 -0.0292 23 1 4.6647 -6.9322 1.1826 24 1 4.6555 -6.9263 -1.2424 25 1 -0.3633 -0.0050 1.0276 26 1 -0.3633 0.8926 -0.5095 27 1 -0.3633 -0.8873 -0.5183 28 1 4.0793 2.9673 -0.0023 29 1 6.3260 3.9414 -0.1106 30 1 8.6970 3.4908 -0.0305 31 1 7.6969 0.6813 0.8969 32 1 10.4169 2.1687 1.0505 33 1 9.6862 1.0484 2.2802 34 1 9.8955 -0.8799 0.7804 35 1 11.2396 0.0897 0.0374 36 1 8.6431 -0.1624 -1.2003 37 1 9.6811 1.3148 -1.4044 38 1 1.8288 -6.6794 -0.0182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492051968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:21 Heat of formation + Delta-G solvation = 22.582479 kcal Electronic energy + Delta-G solvation = -21921.458506 eV Core-core repulsion = 18596.164147 eV Total energy + Delta-G solvation = -3325.294358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.55412 -40.27433 -39.36419 -36.09698 -34.82007 -34.02087 -31.99835 -28.79820 -27.73753 -27.32127 -26.43422 -25.21819 -23.04248 -22.09209 -20.65942 -20.53474 -19.41289 -19.17332 -17.98712 -17.43751 -17.08339 -16.76054 -16.38567 -16.30805 -15.64841 -15.42266 -14.95961 -14.70239 -14.35417 -14.24071 -13.64375 -13.41008 -13.35144 -13.29216 -13.26944 -13.22823 -13.08073 -12.89017 -12.26472 -12.09877 -12.04213 -11.67610 -11.46022 -11.34213 -11.17510 -10.96258 -10.60747 -10.47177 -10.35733 -10.24624 -9.48417 -8.58217 -8.35096 -6.30001 -0.27796 0.24279 0.38183 0.84882 1.26043 1.30932 1.40441 1.54725 1.75261 1.77260 2.13968 2.26908 2.80761 3.09650 3.58211 3.74049 3.80587 3.89026 3.90581 4.09931 4.27709 4.44013 4.53185 4.70808 4.82731 4.84036 4.87162 4.91065 4.99247 5.05933 5.08701 5.15786 5.17308 5.29298 5.31450 5.48212 5.53455 5.74557 6.01928 6.09648 6.86147 6.86908 6.93240 8.49957 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.004488 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.538833 B = 6237.081084 C = 8692.984159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.038 3.962 3 N -0.488 5.488 4 C 0.230 3.770 5 N -0.602 5.602 6 C 0.527 3.473 7 O -0.534 6.534 8 C -0.222 4.222 9 C -0.021 4.021 10 C -0.125 4.125 11 C -0.123 4.123 12 C -0.145 4.145 13 C -0.123 4.123 14 S 0.160 5.840 15 C -0.286 4.286 16 S 0.095 5.905 17 C -0.574 4.574 18 H 0.079 0.921 19 C 0.035 3.965 20 N -0.896 5.896 21 Si 0.985 3.015 22 H -0.269 1.269 23 H -0.263 1.263 24 H -0.263 1.263 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.435 0.565 29 H 0.176 0.824 30 H 0.174 0.826 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.099 0.901 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.194 19.139 0.377 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.210 5.210 4 C -0.143 4.143 5 N -0.253 5.253 6 C 0.320 3.680 7 O -0.413 6.413 8 C -0.242 4.242 9 C -0.040 4.040 10 C -0.143 4.143 11 C -0.161 4.161 12 C -0.182 4.182 13 C -0.161 4.161 14 S 0.405 5.595 15 C -0.521 4.521 16 S 0.343 5.657 17 C -0.722 4.722 18 H 0.097 0.903 19 C -0.172 4.172 20 N -0.531 5.531 21 Si 0.806 3.194 22 H -0.194 1.194 23 H -0.187 1.187 24 H -0.187 1.187 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.276 0.724 29 H 0.193 0.807 30 H 0.191 0.809 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.117 0.883 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.964 17.589 0.373 21.853 hybrid contribution 0.542 -0.179 -0.018 0.571 sum 13.506 17.409 0.355 22.037 Atomic orbital electron populations 1.20242 0.85748 1.03101 1.03051 1.19704 0.98407 0.84233 1.08009 1.66057 1.02764 1.31321 1.20860 1.24157 0.90232 0.93223 1.06715 1.42579 1.04186 1.07786 1.70791 1.19922 0.81365 0.91171 0.75576 1.90727 1.76527 1.24664 1.49380 1.22506 0.92736 0.97740 1.11260 1.24141 0.95489 0.97867 0.86516 1.22334 0.97778 0.95245 0.98910 1.23006 0.95505 0.99143 0.98404 1.22837 0.99852 0.98018 0.97495 1.22758 0.97333 0.99659 0.96323 1.86010 1.02077 0.98083 1.73360 1.28592 1.01906 1.05938 1.15695 1.82866 1.11270 0.86314 1.85274 1.23462 0.93824 0.94827 1.60108 0.90257 1.25873 1.01355 0.97412 0.92543 1.70100 1.26060 1.10681 1.46239 0.85098 0.77201 0.77984 0.79098 1.19382 1.18743 1.18744 0.90356 0.89512 0.91404 0.72357 0.80678 0.80899 0.88630 0.87392 0.91879 0.91998 0.89832 0.94123 0.88285 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.15 10.02 71.24 0.71 -1.43 16 2 C 0.04 1.60 6.73 41.78 0.28 1.88 16 3 N -0.49 -19.15 10.55 -184.96 -1.95 -21.10 16 4 C 0.23 8.68 8.39 179.19 1.50 10.18 16 5 N -0.60 -16.38 5.39 -312.94 -1.69 -18.07 16 6 C 0.53 13.99 7.60 86.55 0.66 14.65 16 7 O -0.53 -18.66 10.65 -4.12 -0.04 -18.70 16 8 C -0.22 -3.39 10.02 23.42 0.23 -3.15 16 9 C -0.02 -0.28 9.29 24.53 0.23 -0.06 16 10 C -0.12 -2.55 2.87 -11.01 -0.03 -2.58 16 11 C -0.12 -1.91 7.64 31.18 0.24 -1.68 16 12 C -0.14 -2.67 8.09 31.18 0.25 -2.42 16 13 C -0.12 -2.55 7.63 31.12 0.24 -2.31 16 14 S 0.16 7.28 18.34 -56.49 -1.04 6.24 16 15 C -0.29 -13.75 6.67 67.00 0.45 -13.30 16 16 S 0.10 5.09 20.74 -56.49 -1.17 3.92 16 17 C -0.57 -33.00 9.26 67.87 0.63 -32.37 16 18 H 0.08 4.57 5.97 -2.91 -0.02 4.55 16 19 C 0.04 1.96 5.49 84.74 0.46 2.42 16 20 N -0.90 -51.37 13.22 21.59 0.29 -51.08 16 21 Si 0.98 43.79 29.55 68.60 2.03 45.81 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 27 H 0.07 2.42 7.38 -2.39 -0.02 2.40 16 28 H 0.43 8.23 8.80 -92.71 -0.82 7.41 16 29 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 30 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 31 H 0.10 2.80 5.34 -2.57 -0.01 2.78 16 32 H 0.11 1.05 8.09 -2.39 -0.02 1.03 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.55 8.09 -2.38 -0.02 1.53 16 38 H 0.28 14.81 8.32 -92.71 -0.77 14.04 16 Total: -1.00 -72.32 346.44 2.56 -69.76 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.28 Total: 13.38 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 5.86 Total: -30.15 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -3.35 Total: -90.25 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.04 Total: -18.70 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 12.37 SS G_CDS: -2.21 Total: 10.16 kcal Total: -72.32 2.56 -69.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492051968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.340 kcal (2) G-P(sol) polarization free energy of solvation -72.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds