Wall clock time and date at job start Tue Mar 31 2020 14:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00263 * 2 1 4 4 H 1.48501 * 109.47013 * 269.99984 * 3 2 1 5 5 H 1.48504 * 109.47042 * 29.99782 * 3 2 1 6 6 H 1.48502 * 109.47218 * 149.99918 * 3 2 1 7 7 C 1.37883 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99522 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47234 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47398 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00365 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99802 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00135 * 180.02562 * 13 12 11 16 16 S 1.81399 * 109.47038 * 180.02562 * 15 13 12 17 17 C 1.76196 * 102.99751 * 179.97438 * 16 15 13 18 18 C 1.38991 * 120.08264 * 0.02562 * 17 16 15 19 19 C 1.38065 * 119.91907 * 179.97438 * 18 17 16 20 20 C 1.38324 * 120.08029 * 359.97438 * 19 18 17 21 21 C 1.38271 * 120.16157 * 0.02562 * 20 19 18 22 22 C 1.38108 * 120.08151 * 359.97438 * 21 20 19 23 23 N 1.48011 * 120.04202 * 180.02562 * 22 21 20 24 24 O 1.21800 * 119.99500 * 359.97438 * 23 22 21 25 25 O 1.21792 * 119.99623 * 179.97438 * 23 22 21 26 26 H 0.97007 * 119.99722 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47634 * 59.99870 * 9 7 2 28 28 H 1.08999 * 109.47276 * 299.99429 * 9 7 2 29 29 H 1.09005 * 109.46921 * 59.99858 * 10 9 7 30 30 H 1.08999 * 109.46852 * 300.00092 * 10 9 7 31 31 H 1.09005 * 109.46870 * 60.00185 * 11 10 9 32 32 H 1.09003 * 109.47244 * 300.00552 * 11 10 9 33 33 H 0.96998 * 119.99915 * 0.02562 * 12 11 10 34 34 H 1.09002 * 109.46563 * 60.00562 * 15 13 12 35 35 H 1.08999 * 109.47029 * 300.00562 * 15 13 12 36 36 H 1.08001 * 120.04165 * 359.95506 * 18 17 16 37 37 H 1.08005 * 119.95297 * 179.71901 * 19 18 17 38 38 H 1.07996 * 119.91724 * 180.02562 * 20 19 18 39 39 H 1.08005 * 119.96251 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4320 -6.1006 0.0006 13 6 1.9827 -7.3714 0.0015 14 8 0.7903 -7.5929 0.0024 15 6 2.9620 -8.5169 0.0014 16 16 2.0549 -10.0878 0.0021 17 6 3.3436 -11.2894 0.0012 18 6 4.6733 -10.8850 0.0008 19 6 5.6804 -11.8294 0.0006 20 6 5.3672 -13.1768 0.0013 21 6 4.0455 -13.5829 0.0017 22 6 3.0328 -12.6438 0.0019 23 7 1.6183 -13.0794 0.0029 24 8 1.3468 -14.2668 0.0031 25 8 0.7259 -12.2506 0.0035 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6044 0.8906 30 1 2.8717 -3.6044 -0.8894 31 1 0.8531 -5.0451 -0.8886 32 1 0.8536 -5.0446 0.8914 33 1 3.3856 -5.9234 0.0002 34 1 3.5891 -8.4586 0.8911 35 1 3.5881 -8.4595 -0.8889 36 1 4.9185 -9.8332 0.0003 37 1 6.7139 -11.5158 -0.0043 38 1 6.1571 -13.9133 0.0016 39 1 3.8047 -14.6357 0.0027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505500487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:08 Heat of formation + Delta-G solvation = -20.180495 kcal Electronic energy + Delta-G solvation = -23109.250053 eV Core-core repulsion = 19339.348482 eV Total energy + Delta-G solvation = -3769.901571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.40542 -39.73052 -39.64249 -36.79224 -35.58244 -33.45506 -32.59086 -32.31345 -31.54231 -29.99078 -26.93035 -26.55337 -23.82151 -23.34618 -22.78583 -20.95572 -20.37924 -19.74976 -18.86644 -18.03026 -17.77310 -17.06381 -16.66976 -16.22087 -15.99797 -15.87995 -15.58904 -14.84643 -14.61126 -14.50430 -14.28669 -13.95887 -13.51918 -13.03505 -12.95695 -12.35391 -12.33130 -11.94523 -11.82417 -11.78462 -11.57185 -11.36243 -10.95450 -10.82670 -10.66000 -10.65531 -10.23124 -10.18319 -10.15944 -9.95423 -9.49062 -9.18400 -8.98657 -8.42175 -8.04632 -6.06517 -4.10092 -0.56389 0.26069 0.66060 0.98230 1.12767 1.77222 2.46314 2.66646 3.13696 3.27054 3.33785 3.36078 3.74297 4.02937 4.29448 4.34414 4.39610 4.42000 4.48979 4.49469 4.74424 4.86565 5.02958 5.25381 5.29240 5.47322 5.58452 5.66731 5.71923 6.05293 6.12468 6.29077 6.49293 6.69150 6.90580 7.40174 7.43344 7.57462 7.69255 7.91446 8.10017 8.32161 8.96407 9.54320 11.04659 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.030321 B = 0.001873 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.228797 B =14943.867311 C =15836.045106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.718 5.718 13 C 0.528 3.472 14 O -0.522 6.522 15 C -0.207 4.207 16 S 0.112 5.888 17 C -0.061 4.061 18 C -0.144 4.144 19 C -0.043 4.043 20 C -0.135 4.135 21 C -0.032 4.032 22 C -0.042 4.042 23 N 0.030 4.970 24 O -0.169 6.169 25 O -0.141 6.141 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.482 -27.647 0.001 31.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.369 5.369 13 C 0.311 3.689 14 O -0.398 6.398 15 C -0.357 4.357 16 S 0.361 5.639 17 C -0.177 4.177 18 C -0.169 4.169 19 C -0.064 4.064 20 C -0.157 4.157 21 C -0.052 4.052 22 C -0.135 4.135 23 N 0.543 4.457 24 O -0.381 6.381 25 O -0.354 6.354 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.763 -27.423 0.006 30.683 hybrid contribution 2.132 1.153 -0.012 2.423 sum 15.895 -26.270 -0.006 30.704 Atomic orbital electron populations 1.69962 1.06058 1.26767 1.50320 1.25039 0.94876 0.99347 0.95233 0.86573 0.79769 0.83406 0.78106 1.20645 1.21164 1.19921 1.21178 0.92952 0.90907 1.51208 0.92664 1.19033 0.93835 0.90795 0.97759 1.21899 0.99819 0.93226 1.00907 1.21743 0.91773 0.84740 1.02407 1.46111 1.11075 1.05391 1.74365 1.19380 0.88621 0.83433 0.77502 1.90792 1.16041 1.84130 1.48854 1.24403 1.04207 0.99245 1.07888 1.88131 0.99660 0.90666 1.85397 1.22382 1.00479 0.96393 0.98477 1.21267 0.89774 1.01313 1.04578 1.21546 1.00164 0.92817 0.91875 1.21202 0.95292 0.96633 1.02578 1.21021 0.91300 1.00179 0.92712 1.20511 0.81671 0.93074 1.18238 1.43572 1.02991 1.00853 0.98243 1.94522 1.88840 1.00504 1.54195 1.94512 1.39982 1.47715 1.53145 0.92858 0.96214 0.96194 0.92674 0.92669 0.91406 0.91397 0.76641 0.86292 0.86296 0.83643 0.83729 0.83460 0.82660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 11 C 0.12 1.90 5.67 -4.05 -0.02 1.88 16 12 N -0.72 -9.00 5.56 -60.30 -0.33 -9.33 16 13 C 0.53 6.95 7.85 -10.98 -0.09 6.86 16 14 O -0.52 -9.30 15.86 5.56 0.09 -9.22 16 15 C -0.21 -1.76 4.82 36.01 0.17 -1.58 16 16 S 0.11 1.26 17.88 -107.50 -1.92 -0.66 16 17 C -0.06 -0.54 6.11 -39.04 -0.24 -0.78 16 18 C -0.14 -0.80 9.36 -39.37 -0.37 -1.17 16 19 C -0.04 -0.16 10.04 -39.61 -0.40 -0.56 16 20 C -0.13 -0.52 10.04 -39.54 -0.40 -0.92 16 21 C -0.03 -0.20 9.55 -39.62 -0.38 -0.58 16 22 C -0.04 -0.41 6.87 -79.73 -0.55 -0.96 16 23 N 0.03 0.38 4.45 34.07 0.15 0.53 16 24 O -0.17 -2.16 18.45 -29.46 -0.54 -2.70 16 25 O -0.14 -2.04 15.81 -29.46 -0.47 -2.51 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.40 3.66 8.47 -40.82 -0.35 3.32 16 34 H 0.12 0.68 7.75 -51.92 -0.40 0.28 16 35 H 0.12 0.68 7.75 -51.92 -0.40 0.28 16 36 H 0.15 0.49 5.88 -52.49 -0.31 0.18 16 37 H 0.14 0.10 8.06 -52.48 -0.42 -0.33 16 38 H 0.15 0.14 8.06 -52.49 -0.42 -0.28 16 39 H 0.16 0.78 7.61 -52.48 -0.40 0.38 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -34.98 355.77 -9.69 -44.66 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -4.78 Total: -3.69 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -2.95 Total: -12.85 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.55 Total: -34.50 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.92 Total: -14.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -1.92 Total: -0.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.98 -9.69 -44.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505500487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.481 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds