Wall clock time and date at job start Tue Mar 31 2020 14:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00263 * 2 1 4 4 H 1.48501 * 109.47013 * 269.99984 * 3 2 1 5 5 H 1.48504 * 109.47042 * 29.99782 * 3 2 1 6 6 H 1.48502 * 109.47218 * 149.99918 * 3 2 1 7 7 C 1.37883 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99522 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47234 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47398 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00365 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99802 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00135 * 180.02562 * 13 12 11 16 16 S 1.81399 * 109.47038 * 180.02562 * 15 13 12 17 17 C 1.76196 * 102.99751 * 179.97438 * 16 15 13 18 18 C 1.38991 * 120.08264 * 0.02562 * 17 16 15 19 19 C 1.38065 * 119.91907 * 179.97438 * 18 17 16 20 20 C 1.38324 * 120.08029 * 359.97438 * 19 18 17 21 21 C 1.38271 * 120.16157 * 0.02562 * 20 19 18 22 22 C 1.38108 * 120.08151 * 359.97438 * 21 20 19 23 23 N 1.48011 * 120.04202 * 180.02562 * 22 21 20 24 24 O 1.21800 * 119.99500 * 359.97438 * 23 22 21 25 25 O 1.21792 * 119.99623 * 179.97438 * 23 22 21 26 26 H 0.97007 * 119.99722 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47634 * 59.99870 * 9 7 2 28 28 H 1.08999 * 109.47276 * 299.99429 * 9 7 2 29 29 H 1.09005 * 109.46921 * 59.99858 * 10 9 7 30 30 H 1.08999 * 109.46852 * 300.00092 * 10 9 7 31 31 H 1.09005 * 109.46870 * 60.00185 * 11 10 9 32 32 H 1.09003 * 109.47244 * 300.00552 * 11 10 9 33 33 H 0.96998 * 119.99915 * 0.02562 * 12 11 10 34 34 H 1.09002 * 109.46563 * 60.00562 * 15 13 12 35 35 H 1.08999 * 109.47029 * 300.00562 * 15 13 12 36 36 H 1.08001 * 120.04165 * 359.95506 * 18 17 16 37 37 H 1.08005 * 119.95297 * 179.71901 * 19 18 17 38 38 H 1.07996 * 119.91724 * 180.02562 * 20 19 18 39 39 H 1.08005 * 119.96251 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4320 -6.1006 0.0006 13 6 1.9827 -7.3714 0.0015 14 8 0.7903 -7.5929 0.0024 15 6 2.9620 -8.5169 0.0014 16 16 2.0549 -10.0878 0.0021 17 6 3.3436 -11.2894 0.0012 18 6 4.6733 -10.8850 0.0008 19 6 5.6804 -11.8294 0.0006 20 6 5.3672 -13.1768 0.0013 21 6 4.0455 -13.5829 0.0017 22 6 3.0328 -12.6438 0.0019 23 7 1.6183 -13.0794 0.0029 24 8 1.3468 -14.2668 0.0031 25 8 0.7259 -12.2506 0.0035 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6044 0.8906 30 1 2.8717 -3.6044 -0.8894 31 1 0.8531 -5.0451 -0.8886 32 1 0.8536 -5.0446 0.8914 33 1 3.3856 -5.9234 0.0002 34 1 3.5891 -8.4586 0.8911 35 1 3.5881 -8.4595 -0.8889 36 1 4.9185 -9.8332 0.0003 37 1 6.7139 -11.5158 -0.0043 38 1 6.1571 -13.9133 0.0016 39 1 3.8047 -14.6357 0.0027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505500487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:08 Heat of formation + Delta-G solvation = -42.944444 kcal Electronic energy + Delta-G solvation = -23110.237172 eV Core-core repulsion = 19339.348482 eV Total energy + Delta-G solvation = -3770.888690 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.23683 -40.77039 -40.20996 -37.69803 -37.02876 -35.23953 -33.38503 -33.03740 -32.65850 -31.01734 -28.29180 -27.63230 -24.98911 -24.25319 -23.55865 -22.35493 -21.64639 -20.54670 -19.72959 -18.74545 -18.62207 -18.48014 -18.00782 -17.13932 -17.04253 -16.57373 -16.35007 -16.30799 -15.88168 -15.45964 -15.05261 -14.61378 -14.54680 -14.20144 -14.00088 -13.76786 -13.38173 -13.33096 -12.95540 -12.75364 -12.56653 -12.51827 -12.44249 -12.36730 -12.34594 -11.68338 -11.63439 -11.27297 -11.13132 -11.04418 -10.91481 -10.63535 -10.55994 -10.19279 -8.78630 -8.19838 -6.31502 -1.29030 -0.15136 -0.04265 0.28299 0.42521 1.14224 1.41762 1.43068 1.45376 1.53934 2.10952 2.26046 2.42104 3.14090 3.26081 3.59859 3.65642 3.92684 3.93344 3.98184 4.04384 4.13957 4.18401 4.20543 4.50361 4.53695 4.64753 4.93098 4.96183 4.96796 5.11959 5.16679 5.18414 5.36312 5.51690 5.52004 5.70043 5.83906 6.21015 6.43630 6.44373 6.86571 7.12778 7.38297 8.92191 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.030321 B = 0.001873 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.228797 B =14943.867311 C =15836.045106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.129 3.871 12 N -0.703 5.703 13 C 0.523 3.477 14 O -0.576 6.576 15 C -0.179 4.179 16 S 0.019 5.981 17 C -0.065 4.065 18 C -0.141 4.141 19 C -0.025 4.025 20 C -0.118 4.118 21 C -0.040 4.040 22 C -0.069 4.069 23 N 0.032 4.968 24 O -0.176 6.176 25 O -0.200 6.200 26 H 0.263 0.737 27 H -0.010 1.010 28 H -0.009 1.009 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.421 0.579 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.173 0.827 37 H 0.190 0.810 38 H 0.187 0.813 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.309 -28.064 -0.001 35.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.182 1.182 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.017 4.017 10 C -0.138 4.138 11 C 0.005 3.995 12 N -0.356 5.356 13 C 0.309 3.691 14 O -0.456 6.456 15 C -0.329 4.329 16 S 0.268 5.732 17 C -0.182 4.182 18 C -0.166 4.166 19 C -0.046 4.046 20 C -0.139 4.139 21 C -0.061 4.061 22 C -0.161 4.161 23 N 0.537 4.463 24 O -0.390 6.390 25 O -0.401 6.401 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.259 0.741 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.191 0.809 37 H 0.207 0.793 38 H 0.204 0.796 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 19.601 -27.816 0.004 34.029 hybrid contribution 0.505 1.147 -0.012 1.253 sum 20.106 -26.669 -0.009 33.399 Atomic orbital electron populations 1.70119 1.08004 1.27772 1.51700 1.26059 0.95754 1.03683 0.94868 0.85402 0.78706 0.78223 0.78426 1.19861 1.21245 1.18229 1.21683 0.93812 0.91901 1.50351 0.91288 1.18963 0.94546 0.93164 0.95001 1.21588 0.98365 0.91432 1.02414 1.21268 0.91999 0.85496 1.00774 1.45796 1.11510 1.04321 1.74008 1.20144 0.88751 0.84320 0.75883 1.90783 1.18867 1.84962 1.51008 1.24237 1.02534 0.94806 1.11333 1.88559 1.03654 0.94116 1.86909 1.22297 1.00743 0.94814 1.00321 1.21736 0.88294 1.03368 1.03182 1.22136 1.01715 0.92101 0.88630 1.21753 0.94597 0.97958 0.99596 1.21371 0.91798 1.00156 0.92743 1.20862 0.79848 0.94422 1.20976 1.44089 1.04417 1.00411 0.97369 1.94460 1.89665 1.01028 1.53868 1.94522 1.41815 1.47813 1.55953 0.92868 0.99110 0.99087 0.91032 0.91009 0.93249 0.93239 0.74114 0.82626 0.82630 0.80939 0.79282 0.79569 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.87 13.29 21.45 0.28 -56.59 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 3 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.54 -29.41 9.11 25.60 0.23 -29.18 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.07 4.97 29.85 0.15 1.22 16 10 C -0.10 -3.60 5.27 30.59 0.16 -3.44 16 11 C 0.13 4.28 5.67 86.38 0.49 4.77 16 12 N -0.70 -16.48 5.56 -463.07 -2.57 -19.05 16 13 C 0.52 13.43 7.85 87.66 0.69 14.11 16 14 O -0.58 -21.55 15.86 -3.03 -0.05 -21.60 16 15 C -0.18 -2.60 4.82 71.24 0.34 -2.26 16 16 S 0.02 0.44 17.88 -56.49 -1.01 -0.57 16 17 C -0.07 -1.08 6.11 22.62 0.14 -0.94 16 18 C -0.14 -0.94 9.36 22.41 0.21 -0.73 16 19 C -0.03 -0.03 10.04 22.25 0.22 0.19 16 20 C -0.12 -0.30 10.04 22.30 0.22 -0.08 16 21 C -0.04 -0.43 9.55 22.25 0.21 -0.21 16 22 C -0.07 -1.32 6.87 36.52 0.25 -1.06 16 23 N 0.03 0.88 4.45 -46.13 -0.21 0.67 16 24 O -0.18 -4.82 18.45 18.89 0.35 -4.47 16 25 O -0.20 -6.52 15.81 18.90 0.30 -6.22 16 26 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.42 6.21 8.47 -92.71 -0.79 5.43 16 34 H 0.16 1.12 7.75 -2.39 -0.02 1.10 16 35 H 0.16 1.11 7.75 -2.39 -0.02 1.10 16 36 H 0.17 0.13 5.88 -2.91 -0.02 0.12 16 37 H 0.19 -1.32 8.06 -2.91 -0.02 -1.34 16 38 H 0.19 -0.90 8.06 -2.91 -0.02 -0.93 16 39 H 0.16 1.37 7.61 -2.91 -0.02 1.34 16 Total: -1.00 -84.74 355.77 3.21 -81.53 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: 0.30 Total: -1.32 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 3.78 Total: -17.49 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -2.49 Total: -74.97 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: 0.60 Total: -32.29 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -1.01 Total: -0.57 kcal Total: -84.74 3.21 -81.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505500487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.583 kcal (2) G-P(sol) polarization free energy of solvation -84.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds