Wall clock time and date at job start Tue Mar 31 2020 13:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46828 * 90.00241 * 8 6 4 10 10 H 1.48494 * 109.47178 * 209.99936 * 8 6 4 11 11 H 1.48500 * 109.47075 * 330.00183 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 S 1.81002 * 109.47004 * 299.99738 * 12 2 1 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 2 15 15 N 1.31150 * 126.38150 * 0.02562 * 14 13 12 16 16 N 1.28654 * 109.30817 * 180.02562 * 15 14 13 17 17 C 1.30071 * 109.56671 * 0.02562 * 16 15 14 18 18 C 1.50702 * 126.20924 * 179.97438 * 17 16 15 19 19 C 1.50693 * 109.47201 * 90.02435 * 18 17 16 20 20 C 1.33387 * 125.20431 * 89.71532 * 19 18 17 21 21 C 1.38425 * 114.92283 * 179.86170 * 20 19 18 22 22 C 1.33384 * 114.92053 * 0.43370 * 21 20 19 23 23 S 1.75887 * 125.20333 * 270.02651 * 19 18 17 24 24 O 1.34638 * 126.38116 * 179.71575 * 14 13 12 25 25 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 26 26 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 27 27 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 30 30 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 31 31 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 33 33 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.47240 * 210.03016 * 18 17 16 35 35 H 1.09007 * 109.46584 * 330.02476 * 18 17 16 36 36 H 1.08008 * 122.53880 * 0.02562 * 20 19 18 37 37 H 1.07999 * 122.53913 * 180.21091 * 21 20 19 38 38 H 1.07997 * 125.20267 * 179.79206 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3444 -2.1615 -4.4124 10 1 2.4870 -0.1403 -5.1121 11 1 3.6306 -1.7567 -3.7121 12 6 2.0401 -0.7213 1.2492 13 16 1.4368 0.1319 2.7271 14 6 2.1534 -0.8803 3.9787 15 7 2.9032 -1.9393 3.7881 16 7 3.2479 -2.4271 4.9275 17 6 2.7367 -1.7069 5.8824 18 6 2.9020 -1.9429 7.3616 19 6 4.1163 -1.2001 7.8562 20 6 4.1180 0.0535 8.3120 21 6 5.3550 0.5257 8.7157 22 6 6.3594 -0.3414 8.5794 23 16 5.7493 -1.8508 7.9136 24 8 2.0380 -0.7074 5.3089 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 0.7080 1.1609 -3.4844 32 1 1.6767 -1.7490 1.2492 33 1 3.1301 -0.7209 1.2494 34 1 2.0173 -1.5844 7.8878 35 1 3.0279 -3.0096 7.5474 36 1 3.2216 0.6538 8.3646 37 1 5.4968 1.5219 9.1079 38 1 7.3896 -0.1466 8.8385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519706325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:45 Heat of formation + Delta-G solvation = 65.272497 kcal Electronic energy + Delta-G solvation = -21707.519724 eV Core-core repulsion = 18384.076543 eV Total energy + Delta-G solvation = -3323.443180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.91164 -38.26315 -36.20047 -35.92446 -33.90041 -31.63878 -30.31351 -27.41691 -26.27885 -25.80113 -25.21076 -23.94868 -23.75471 -22.24420 -19.58028 -19.29510 -18.12907 -17.73927 -17.03330 -16.18581 -16.08734 -15.81430 -15.15331 -14.79018 -14.15631 -13.72725 -13.54258 -13.37029 -12.99972 -12.88311 -12.81619 -12.39504 -12.27677 -12.01210 -11.73005 -11.56883 -11.38926 -11.16063 -11.02523 -10.94058 -10.76179 -10.44240 -10.32982 -10.12754 -10.08156 -9.66593 -9.59562 -9.07217 -8.79079 -8.74581 -8.45407 -7.45127 -6.07658 -4.18861 0.56526 0.97363 1.15719 1.33420 1.69882 2.35087 2.48112 2.57327 2.96102 3.26141 3.33377 3.37636 4.17316 4.32905 4.36003 4.72832 4.78971 4.98585 5.15330 5.19151 5.21849 5.25637 5.40655 5.63507 5.77005 5.86416 5.94036 5.96086 6.13670 6.39792 6.69064 6.78745 6.89298 6.92824 7.24900 7.47297 7.64605 7.92579 8.04846 8.28861 8.35201 8.80527 9.47149 10.93732 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.002535 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.388806 B =11042.704521 C =11293.339975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.082 3.918 3 C -0.138 4.138 4 C -0.506 4.506 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.082 4.082 13 S 0.049 5.951 14 C 0.144 3.856 15 N -0.296 5.296 16 N -0.267 5.267 17 C 0.142 3.858 18 C 0.058 3.942 19 C -0.193 4.193 20 C -0.120 4.120 21 C -0.138 4.138 22 C -0.211 4.211 23 S 0.127 5.873 24 O -0.210 6.210 25 H 0.016 0.984 26 H 0.090 0.910 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.090 0.910 30 H 0.016 0.984 31 H 0.262 0.738 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.534 -0.930 22.263 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.080 3.920 3 C -0.196 4.196 4 C -0.546 4.546 5 H 0.078 0.922 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.230 4.230 13 S 0.281 5.719 14 C -0.171 4.171 15 N -0.148 5.148 16 N -0.115 5.115 17 C -0.074 4.074 18 C 0.017 3.983 19 C -0.311 4.311 20 C -0.152 4.152 21 C -0.168 4.168 22 C -0.347 4.347 23 S 0.392 5.608 24 O -0.091 6.091 25 H 0.035 0.965 26 H 0.109 0.891 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.109 -2.161 21.221 21.934 hybrid contribution -0.047 0.754 0.055 0.758 sum 5.063 -1.407 21.276 21.916 Atomic orbital electron populations 1.21960 0.97183 0.99722 1.00759 1.18099 0.93066 0.92549 0.88320 1.21956 0.98992 0.97916 1.00748 1.20975 1.31931 1.12315 0.89363 0.92185 1.24875 0.94772 0.94889 0.98826 1.69796 1.36378 1.22601 1.23475 0.86525 0.79369 0.79372 0.82369 1.20614 1.21170 1.19818 1.24415 1.04238 1.02510 0.91811 1.86272 1.60540 1.32069 0.93002 1.30850 1.00794 1.00091 0.85375 1.74983 1.14150 1.08169 1.17480 1.74060 1.19033 1.23962 0.94399 1.27540 0.94913 0.86322 0.98659 1.18383 0.95725 1.02023 0.82146 1.24131 0.97990 0.99339 1.09654 1.20221 0.99426 0.94538 1.00982 1.20166 0.91836 1.01266 1.03582 1.25757 1.03610 0.97562 1.07793 1.84483 0.99676 1.15252 1.61392 1.84958 1.58929 1.46065 1.19166 0.96534 0.89135 0.94951 0.94963 0.89141 0.96536 0.92801 0.89385 0.89419 0.86686 0.86186 0.83948 0.84043 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.01 37.16 0.30 -2.82 16 2 C 0.08 1.89 0.52 -155.66 -0.08 1.81 16 3 C -0.14 -3.13 8.01 37.16 0.30 -2.83 16 4 C -0.51 -13.02 8.01 -34.44 -0.28 -13.29 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -23.28 9.35 55.43 0.52 -22.76 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 C -0.08 -1.68 4.17 37.16 0.15 -1.52 16 13 S 0.05 0.89 19.36 -107.50 -2.08 -1.19 16 14 C 0.14 2.63 8.53 52.47 0.45 3.08 16 15 N -0.30 -5.78 11.63 30.29 0.35 -5.42 16 16 N -0.27 -4.70 12.20 32.59 0.40 -4.30 16 17 C 0.14 2.06 7.71 -13.02 -0.10 1.96 16 18 C 0.06 0.54 6.34 -29.04 -0.18 0.36 16 19 C -0.19 -1.91 5.75 -36.01 -0.21 -2.12 16 20 C -0.12 -1.11 10.05 -41.21 -0.41 -1.53 16 21 C -0.14 -1.17 10.18 -41.21 -0.42 -1.59 16 22 C -0.21 -1.78 11.23 29.04 0.33 -1.46 16 23 S 0.13 1.23 23.33 -107.50 -2.51 -1.28 16 24 O -0.21 -3.41 10.90 3.51 0.04 -3.37 16 25 H 0.02 0.33 6.91 -51.93 -0.36 -0.03 16 26 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 30 H 0.02 0.33 6.91 -51.93 -0.36 -0.03 16 31 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 33 H 0.09 1.84 8.14 -51.91 -0.42 1.42 16 34 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -28.63 346.33 -8.03 -36.66 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.69 Total: -0.71 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -0.25 Total: -18.29 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 1.27 Total: -32.49 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.37 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -4.59 Total: -2.47 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.63 -8.03 -36.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519706325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.933 kcal (2) G-P(sol) polarization free energy of solvation -28.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds