Wall clock time and date at job start Tue Mar 31 2020 13:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46828 * 90.00241 * 8 6 4 10 10 H 1.48494 * 109.47178 * 209.99936 * 8 6 4 11 11 H 1.48500 * 109.47075 * 330.00183 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 S 1.81002 * 109.47004 * 299.99738 * 12 2 1 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 2 15 15 N 1.31150 * 126.38150 * 0.02562 * 14 13 12 16 16 N 1.28654 * 109.30817 * 180.02562 * 15 14 13 17 17 C 1.30071 * 109.56671 * 0.02562 * 16 15 14 18 18 C 1.50702 * 126.20924 * 179.97438 * 17 16 15 19 19 C 1.50693 * 109.47201 * 90.02435 * 18 17 16 20 20 C 1.33387 * 125.20431 * 89.71532 * 19 18 17 21 21 C 1.38425 * 114.92283 * 179.86170 * 20 19 18 22 22 C 1.33384 * 114.92053 * 0.43370 * 21 20 19 23 23 S 1.75887 * 125.20333 * 270.02651 * 19 18 17 24 24 O 1.34638 * 126.38116 * 179.71575 * 14 13 12 25 25 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 26 26 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 27 27 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 30 30 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 31 31 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 33 33 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.47240 * 210.03016 * 18 17 16 35 35 H 1.09007 * 109.46584 * 330.02476 * 18 17 16 36 36 H 1.08008 * 122.53880 * 0.02562 * 20 19 18 37 37 H 1.07999 * 122.53913 * 180.21091 * 21 20 19 38 38 H 1.07997 * 125.20267 * 179.79206 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3444 -2.1615 -4.4124 10 1 2.4870 -0.1403 -5.1121 11 1 3.6306 -1.7567 -3.7121 12 6 2.0401 -0.7213 1.2492 13 16 1.4368 0.1319 2.7271 14 6 2.1534 -0.8803 3.9787 15 7 2.9032 -1.9393 3.7881 16 7 3.2479 -2.4271 4.9275 17 6 2.7367 -1.7069 5.8824 18 6 2.9020 -1.9429 7.3616 19 6 4.1163 -1.2001 7.8562 20 6 4.1180 0.0535 8.3120 21 6 5.3550 0.5257 8.7157 22 6 6.3594 -0.3414 8.5794 23 16 5.7493 -1.8508 7.9136 24 8 2.0380 -0.7074 5.3089 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 0.7080 1.1609 -3.4844 32 1 1.6767 -1.7490 1.2492 33 1 3.1301 -0.7209 1.2494 34 1 2.0173 -1.5844 7.8878 35 1 3.0279 -3.0096 7.5474 36 1 3.2216 0.6538 8.3646 37 1 5.4968 1.5219 9.1079 38 1 7.3896 -0.1466 8.8385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519706325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:45 Heat of formation + Delta-G solvation = 47.723479 kcal Electronic energy + Delta-G solvation = -21708.280706 eV Core-core repulsion = 18384.076543 eV Total energy + Delta-G solvation = -3324.204163 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.21661 -38.93410 -37.98573 -37.29447 -34.80305 -33.58074 -31.41800 -28.47773 -27.73026 -27.63024 -27.18066 -25.19341 -24.71187 -23.27820 -21.06424 -20.25445 -19.51018 -18.79878 -18.11159 -17.97834 -17.39453 -16.71817 -16.53630 -16.12528 -15.77331 -15.17616 -14.72791 -14.45583 -14.17702 -14.07938 -13.68327 -13.62969 -13.48992 -13.32258 -13.23289 -13.08495 -12.81160 -12.74619 -12.60252 -12.35352 -12.28584 -12.11454 -11.75093 -11.72588 -11.57780 -11.41402 -11.37780 -10.64002 -10.41010 -9.77114 -9.46041 -8.88262 -8.03917 -6.20588 -0.46934 -0.21836 0.02188 0.62713 1.00987 1.02719 1.15830 1.43614 1.46911 1.54821 1.59112 1.89821 2.45958 3.14418 3.20088 3.60111 3.75713 3.84485 4.16333 4.18594 4.21598 4.23363 4.26584 4.55365 4.65408 4.67783 4.70956 4.91632 4.98426 5.07866 5.11605 5.13892 5.28505 5.41050 5.49808 5.60922 5.66297 6.07082 6.15128 6.37777 6.82434 7.04135 7.47333 8.95421 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.002535 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.388806 B =11042.704521 C =11293.339975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.076 3.924 3 C -0.129 4.129 4 C -0.526 4.526 5 H 0.050 0.950 6 C 0.030 3.970 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.275 1.275 12 C -0.078 4.078 13 S 0.082 5.918 14 C 0.131 3.869 15 N -0.322 5.322 16 N -0.302 5.302 17 C 0.169 3.831 18 C 0.057 3.943 19 C -0.209 4.209 20 C -0.120 4.120 21 C -0.148 4.148 22 C -0.207 4.207 23 S 0.094 5.906 24 O -0.208 6.208 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.262 0.738 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.555 -0.437 24.269 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.073 3.927 3 C -0.188 4.188 4 C -0.565 4.565 5 H 0.068 0.932 6 C -0.170 4.170 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.200 1.200 12 C -0.227 4.227 13 S 0.314 5.686 14 C -0.186 4.186 15 N -0.174 5.174 16 N -0.148 5.148 17 C -0.048 4.048 18 C 0.017 3.983 19 C -0.327 4.327 20 C -0.152 4.152 21 C -0.178 4.178 22 C -0.343 4.343 23 S 0.358 5.642 24 O -0.090 6.090 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.142 -1.684 23.236 23.858 hybrid contribution 0.000 0.613 -0.379 0.721 sum 5.141 -1.071 22.857 23.453 Atomic orbital electron populations 1.21824 0.96872 0.99450 1.00631 1.18065 0.93286 0.92658 0.88646 1.21820 0.98632 0.97688 1.00613 1.21253 1.32011 1.12341 0.90934 0.93212 1.25457 0.95056 0.95529 1.00961 1.69901 1.36841 1.23248 1.23830 0.85725 0.78706 0.78456 0.79737 1.20420 1.20840 1.19970 1.24042 1.03581 1.02174 0.92895 1.85918 1.60278 1.31147 0.91283 1.30716 1.01413 1.00249 0.86211 1.74925 1.14702 1.08812 1.18925 1.74021 1.20857 1.25330 0.94547 1.28610 0.91816 0.84217 1.00107 1.18803 0.97141 1.03439 0.78871 1.24166 0.97745 0.99852 1.10947 1.20550 1.00377 0.94336 0.99907 1.20485 0.91532 1.02286 1.03475 1.26075 1.04768 0.96512 1.06921 1.84610 1.00618 1.16794 1.62184 1.84973 1.59163 1.46563 1.18264 0.94424 0.91397 0.95252 0.95367 0.91385 0.94458 0.92843 0.90160 0.90378 0.83286 0.84393 0.82410 0.81874 0.79627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.01 71.98 0.58 -5.25 16 2 C 0.08 3.50 0.52 -52.93 -0.03 3.47 16 3 C -0.13 -5.84 8.01 71.98 0.58 -5.26 16 4 C -0.53 -27.38 8.01 25.60 0.21 -27.17 16 5 H 0.05 2.63 7.74 -2.91 -0.02 2.60 16 6 C 0.03 1.57 5.15 84.66 0.44 2.01 16 7 N -0.90 -47.71 9.35 21.45 0.20 -47.51 16 8 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C -0.08 -3.22 4.17 71.98 0.30 -2.92 16 13 S 0.08 2.87 19.36 -56.49 -1.09 1.78 16 14 C 0.13 4.64 8.53 130.34 1.11 5.75 16 15 N -0.32 -12.48 11.63 -172.08 -2.00 -14.48 16 16 N -0.30 -10.40 12.20 -165.24 -2.02 -12.42 16 17 C 0.17 4.59 7.71 88.37 0.68 5.27 16 18 C 0.06 0.92 6.34 29.10 0.18 1.11 16 19 C -0.21 -3.68 5.75 24.59 0.14 -3.54 16 20 C -0.12 -1.90 10.05 21.22 0.21 -1.68 16 21 C -0.15 -2.12 10.18 21.22 0.22 -1.91 16 22 C -0.21 -3.06 11.23 66.72 0.75 -2.31 16 23 S 0.09 1.70 23.33 -56.49 -1.32 0.38 16 24 O -0.21 -6.36 10.90 -10.36 -0.11 -6.48 16 25 H 0.04 1.48 6.91 -2.39 -0.02 1.47 16 26 H 0.07 3.38 6.07 -2.39 -0.01 3.36 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 3.39 6.07 -2.38 -0.01 3.38 16 30 H 0.04 1.48 6.91 -2.39 -0.02 1.46 16 31 H 0.26 13.36 8.31 -92.71 -0.77 12.58 16 32 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.08 3.32 8.14 -2.40 -0.02 3.30 16 34 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.14 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -61.41 346.33 2.13 -59.28 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.08 Total: 7.69 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 5.36 Total: -32.44 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -3.82 Total: -74.41 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.11 Total: -6.48 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -2.41 Total: 2.16 kcal Total: -61.41 2.13 -59.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519706325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.003 kcal (2) G-P(sol) polarization free energy of solvation -61.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds