Wall clock time and date at job start Tue Mar 31 2020 13:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31585 * 122.22990 * 2 1 4 4 C 1.29980 * 117.13023 * 179.97438 * 3 2 1 5 5 N 1.38745 * 125.36194 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00038 * 179.72062 * 5 4 3 7 7 O 1.21638 * 119.99607 * 0.27645 * 6 5 4 8 8 C 1.47030 * 120.00078 * 180.27389 * 6 5 4 9 9 C 1.32664 * 124.62598 * 174.56029 * 8 6 5 10 10 C 1.50701 * 124.62221 * 359.97438 * 9 8 6 11 11 C 1.51113 * 110.75077 * 179.87931 * 9 8 6 12 12 C 1.54568 * 104.89849 * 343.76441 * 11 9 8 13 13 C 1.51106 * 124.62401 * 354.85878 * 8 6 5 14 14 S 1.76140 * 109.27149 * 0.26072 * 4 3 2 15 15 C 1.34674 * 122.23010 * 179.97438 * 2 1 3 16 16 S 1.76205 * 125.92808 * 0.02562 * 15 2 1 17 17 C 1.76201 * 99.99809 * 179.97438 * 16 15 2 18 18 H 1.08000 * 120.00221 * 0.02562 * 17 16 15 19 19 C 1.38427 * 119.99729 * 179.97438 * 17 16 15 20 20 N 1.31814 * 119.99732 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00295 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47079 * 89.99817 * 21 19 17 23 23 H 1.48498 * 109.47563 * 210.00010 * 21 19 17 24 24 H 1.48500 * 109.46983 * 330.00176 * 21 19 17 25 25 H 1.08996 * 109.47411 * 90.02185 * 1 2 3 26 26 H 1.08996 * 109.46901 * 210.02575 * 1 2 3 27 27 H 1.09009 * 109.46867 * 330.01999 * 1 2 3 28 28 H 0.97004 * 119.99756 * 359.97438 * 5 4 3 29 29 H 1.09003 * 109.46856 * 62.65849 * 10 9 8 30 30 H 1.09002 * 109.47105 * 182.65368 * 10 9 8 31 31 H 1.08992 * 109.47415 * 302.65847 * 10 9 8 32 32 H 1.09001 * 110.50092 * 224.82035 * 11 9 8 33 33 H 1.08998 * 110.16955 * 102.54128 * 11 9 8 34 34 H 1.08999 * 110.98582 * 266.73599 * 12 11 9 35 35 H 1.08997 * 111.01698 * 142.95565 * 12 11 9 36 36 H 1.09005 * 110.36755 * 315.42133 * 13 8 6 37 37 H 1.08995 * 110.36907 * 77.73878 * 13 8 6 38 38 H 0.97006 * 119.99648 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5034 0.9976 0.0005 5 7 4.4038 2.0532 0.0011 6 6 5.7291 1.8085 0.0073 7 8 6.1359 0.6621 0.0073 8 6 6.6832 2.9271 0.0140 9 6 7.9987 2.7953 0.1239 10 6 8.7189 1.4784 0.2593 11 6 8.6766 4.1454 0.0923 12 6 7.6101 5.1126 -0.4699 13 6 6.2987 4.3842 -0.0968 14 16 3.9347 -0.7102 -0.0065 15 6 2.2252 -1.1392 0.0005 16 16 1.5697 -2.7748 0.0006 17 6 3.0666 -3.7043 0.0006 18 1 4.0187 -3.1947 0.0009 19 6 3.0220 -5.0879 0.0012 20 7 4.1418 -5.7833 0.0017 21 14 1.3752 -5.9694 0.0013 22 1 0.9390 -6.2036 -1.3988 23 1 1.5108 -7.2717 0.7019 24 1 0.3665 -5.1337 0.7007 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5136 28 1 4.0793 2.9674 0.0008 29 1 8.5498 0.8782 -0.6348 30 1 9.7871 1.6591 0.3789 31 1 8.3406 0.9454 1.1315 32 1 9.5481 4.1198 -0.5620 33 1 8.9663 4.4442 1.0997 34 1 7.7062 5.2141 -1.5509 35 1 7.6686 6.0855 0.0180 36 1 5.5527 4.5213 -0.8797 37 1 5.9198 4.7502 0.8574 38 1 4.1106 -6.7528 0.0025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533011156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:08 Heat of formation + Delta-G solvation = 7.257786 kcal Electronic energy + Delta-G solvation = -21913.392208 eV Core-core repulsion = 18587.433321 eV Total energy + Delta-G solvation = -3325.958887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47300 -38.84041 -38.00020 -34.81592 -32.73601 -31.50949 -30.81727 -29.22677 -27.12827 -26.02404 -25.87541 -24.14841 -22.02591 -20.94927 -20.31596 -18.64837 -17.60077 -17.27874 -16.45026 -16.14651 -15.74595 -15.30862 -15.16410 -14.98740 -14.01843 -13.98411 -13.58277 -13.34329 -13.18063 -13.03142 -12.76013 -12.74168 -12.13528 -11.99268 -11.89677 -11.67781 -11.55595 -11.48449 -11.34455 -11.32599 -11.26075 -10.73849 -10.58196 -10.12090 -9.83145 -9.43768 -9.13473 -9.00405 -8.81439 -8.74485 -7.84362 -6.69445 -6.53875 -4.26698 1.00065 1.54803 1.83488 2.50051 2.80630 2.98658 3.01709 3.11763 3.21423 3.40038 3.62663 4.04650 4.13955 4.21693 4.51036 4.64544 4.75019 4.77683 4.86023 5.15922 5.21946 5.29320 5.33026 5.45723 5.53699 5.64678 5.70802 5.82042 5.83775 5.88300 6.10068 6.14277 6.23014 6.34799 6.39872 6.44363 6.91416 7.22412 7.69144 8.04153 8.25914 8.46033 8.86026 10.54054 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.003432 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.420254 B = 8156.818258 C = 9545.448194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.032 3.968 3 N -0.484 5.484 4 C 0.196 3.804 5 N -0.612 5.612 6 C 0.559 3.441 7 O -0.502 6.502 8 C -0.206 4.206 9 C -0.029 4.029 10 C -0.113 4.113 11 C -0.101 4.101 12 C -0.121 4.121 13 C -0.089 4.089 14 S 0.233 5.767 15 C -0.241 4.241 16 S 0.052 5.948 17 C -0.544 4.544 18 H 0.105 0.895 19 C 0.102 3.898 20 N -0.858 5.858 21 Si 0.852 3.148 22 H -0.261 1.261 23 H -0.266 1.266 24 H -0.236 1.236 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.414 0.586 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.086 19.560 0.163 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 N -0.206 5.206 4 C -0.174 4.174 5 N -0.261 5.261 6 C 0.347 3.653 7 O -0.378 6.378 8 C -0.209 4.209 9 C -0.031 4.031 10 C -0.169 4.169 11 C -0.137 4.137 12 C -0.158 4.158 13 C -0.126 4.126 14 S 0.479 5.521 15 C -0.477 4.477 16 S 0.299 5.701 17 C -0.692 4.692 18 H 0.122 0.878 19 C -0.110 4.110 20 N -0.492 5.492 21 Si 0.676 3.324 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.160 1.160 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.252 0.748 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.103 17.969 0.154 18.681 hybrid contribution -0.325 0.412 0.000 0.524 sum 4.779 18.381 0.154 18.993 Atomic orbital electron populations 1.20145 0.88030 1.02189 1.01893 1.19114 0.96771 0.84628 1.10469 1.65890 1.02867 1.32156 1.19641 1.23970 0.90010 0.93511 1.09946 1.42298 1.04403 1.07991 1.71374 1.18074 0.80943 0.89239 0.76995 1.90802 1.77032 1.21801 1.48120 1.21258 0.93821 0.94310 1.11530 1.22889 0.93622 0.96666 0.89912 1.20736 0.98880 0.93002 1.04326 1.21453 0.98773 0.91252 1.02268 1.22393 0.93754 0.98197 1.01496 1.21205 0.98670 0.90520 1.02210 1.86164 1.00502 0.94363 1.71109 1.28167 1.01803 1.04427 1.13317 1.82445 1.13488 0.89220 1.84978 1.22660 0.92410 0.94471 1.59682 0.87772 1.24739 0.97363 0.96230 0.92645 1.70016 1.26447 1.07636 1.45056 0.86812 0.83914 0.81336 0.80357 1.18570 1.19019 1.15995 0.91717 0.91098 0.91739 0.74835 0.89583 0.91910 0.89885 0.89962 0.89448 0.90673 0.90367 0.90700 0.90175 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.01 0.36 -0.70 16 2 C 0.03 0.66 6.73 -83.96 -0.57 0.10 16 3 N -0.48 -9.69 10.55 -9.81 -0.10 -9.79 16 4 C 0.20 3.83 8.39 -87.31 -0.73 3.10 16 5 N -0.61 -9.40 5.38 -12.89 -0.07 -9.47 16 6 C 0.56 8.59 7.74 -12.70 -0.10 8.49 16 7 O -0.50 -9.45 12.28 5.24 0.06 -9.39 16 8 C -0.21 -2.33 6.09 -102.75 -0.63 -2.96 16 9 C -0.03 -0.29 6.24 -101.04 -0.63 -0.92 16 10 C -0.11 -1.23 8.80 36.01 0.32 -0.91 16 11 C -0.10 -0.69 6.74 -26.86 -0.18 -0.87 16 12 C -0.12 -0.74 7.16 -25.08 -0.18 -0.92 16 13 C -0.09 -0.69 5.96 -26.85 -0.16 -0.85 16 14 S 0.23 5.27 18.34 -107.50 -1.97 3.30 16 15 C -0.24 -5.54 6.67 29.47 0.20 -5.34 16 16 S 0.05 1.25 18.70 -107.50 -2.01 -0.76 16 17 C -0.54 -15.28 9.80 30.80 0.30 -14.97 16 18 H 0.10 3.14 6.21 -52.49 -0.33 2.81 16 19 C 0.10 2.83 5.49 -17.49 -0.10 2.73 16 20 N -0.86 -24.91 13.98 55.47 0.78 -24.13 16 21 Si 0.85 19.82 27.73 -169.99 -4.71 15.11 16 22 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.24 -5.25 6.73 56.52 0.38 -4.87 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.18 7.37 -51.93 -0.38 0.79 16 27 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.41 4.97 7.95 -40.82 -0.32 4.64 16 29 H 0.09 1.06 7.84 -51.93 -0.41 0.66 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 31 H 0.08 1.03 7.79 -51.93 -0.40 0.63 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.54 8.00 -51.93 -0.42 0.12 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.28 7.36 8.32 -40.82 -0.34 7.02 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -32.15 342.35 -9.76 -41.91 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.80 Total: 2.11 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.09 Total: -14.04 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.60 Total: -43.40 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.06 Total: -9.39 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.71 Total: 15.11 kcal Atomic # 16 Polarization: 6.51 SS G_CDS: -3.98 Total: 2.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.15 -9.76 -41.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533011156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.170 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds