Wall clock time and date at job start Tue Mar 31 2020 13:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31585 * 122.22990 * 2 1 4 4 C 1.29980 * 117.13023 * 179.97438 * 3 2 1 5 5 N 1.38745 * 125.36194 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00038 * 179.72062 * 5 4 3 7 7 O 1.21638 * 119.99607 * 0.27645 * 6 5 4 8 8 C 1.47030 * 120.00078 * 180.27389 * 6 5 4 9 9 C 1.32664 * 124.62598 * 174.56029 * 8 6 5 10 10 C 1.50701 * 124.62221 * 359.97438 * 9 8 6 11 11 C 1.51113 * 110.75077 * 179.87931 * 9 8 6 12 12 C 1.54568 * 104.89849 * 343.76441 * 11 9 8 13 13 C 1.51106 * 124.62401 * 354.85878 * 8 6 5 14 14 S 1.76140 * 109.27149 * 0.26072 * 4 3 2 15 15 C 1.34674 * 122.23010 * 179.97438 * 2 1 3 16 16 S 1.76205 * 125.92808 * 0.02562 * 15 2 1 17 17 C 1.76201 * 99.99809 * 179.97438 * 16 15 2 18 18 H 1.08000 * 120.00221 * 0.02562 * 17 16 15 19 19 C 1.38427 * 119.99729 * 179.97438 * 17 16 15 20 20 N 1.31814 * 119.99732 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00295 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47079 * 89.99817 * 21 19 17 23 23 H 1.48498 * 109.47563 * 210.00010 * 21 19 17 24 24 H 1.48500 * 109.46983 * 330.00176 * 21 19 17 25 25 H 1.08996 * 109.47411 * 90.02185 * 1 2 3 26 26 H 1.08996 * 109.46901 * 210.02575 * 1 2 3 27 27 H 1.09009 * 109.46867 * 330.01999 * 1 2 3 28 28 H 0.97004 * 119.99756 * 359.97438 * 5 4 3 29 29 H 1.09003 * 109.46856 * 62.65849 * 10 9 8 30 30 H 1.09002 * 109.47105 * 182.65368 * 10 9 8 31 31 H 1.08992 * 109.47415 * 302.65847 * 10 9 8 32 32 H 1.09001 * 110.50092 * 224.82035 * 11 9 8 33 33 H 1.08998 * 110.16955 * 102.54128 * 11 9 8 34 34 H 1.08999 * 110.98582 * 266.73599 * 12 11 9 35 35 H 1.08997 * 111.01698 * 142.95565 * 12 11 9 36 36 H 1.09005 * 110.36755 * 315.42133 * 13 8 6 37 37 H 1.08995 * 110.36907 * 77.73878 * 13 8 6 38 38 H 0.97006 * 119.99648 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5034 0.9976 0.0005 5 7 4.4038 2.0532 0.0011 6 6 5.7291 1.8085 0.0073 7 8 6.1359 0.6621 0.0073 8 6 6.6832 2.9271 0.0140 9 6 7.9987 2.7953 0.1239 10 6 8.7189 1.4784 0.2593 11 6 8.6766 4.1454 0.0923 12 6 7.6101 5.1126 -0.4699 13 6 6.2987 4.3842 -0.0968 14 16 3.9347 -0.7102 -0.0065 15 6 2.2252 -1.1392 0.0005 16 16 1.5697 -2.7748 0.0006 17 6 3.0666 -3.7043 0.0006 18 1 4.0187 -3.1947 0.0009 19 6 3.0220 -5.0879 0.0012 20 7 4.1418 -5.7833 0.0017 21 14 1.3752 -5.9694 0.0013 22 1 0.9390 -6.2036 -1.3988 23 1 1.5108 -7.2717 0.7019 24 1 0.3665 -5.1337 0.7007 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5136 28 1 4.0793 2.9674 0.0008 29 1 8.5498 0.8782 -0.6348 30 1 9.7871 1.6591 0.3789 31 1 8.3406 0.9454 1.1315 32 1 9.5481 4.1198 -0.5620 33 1 8.9663 4.4442 1.0997 34 1 7.7062 5.2141 -1.5509 35 1 7.6686 6.0855 0.0180 36 1 5.5527 4.5213 -0.8797 37 1 5.9198 4.7502 0.8574 38 1 4.1106 -6.7528 0.0025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533011156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:07 Heat of formation + Delta-G solvation = -12.717059 kcal Electronic energy + Delta-G solvation = -21914.258383 eV Core-core repulsion = 18587.433321 eV Total energy + Delta-G solvation = -3326.825061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69402 -40.33953 -38.99459 -36.24993 -34.83047 -32.36201 -32.18904 -30.10057 -28.79146 -27.91500 -26.78226 -25.50170 -23.18233 -22.07595 -21.56341 -20.28418 -19.14223 -18.80905 -17.61569 -17.41873 -17.19842 -17.04775 -16.32944 -16.24338 -15.54985 -15.41278 -15.01191 -14.54755 -14.37132 -14.16238 -13.84213 -13.60290 -13.51600 -13.42112 -13.34249 -13.18639 -13.09678 -12.66556 -12.40854 -12.25596 -12.16078 -12.01457 -11.94166 -11.88244 -11.36911 -11.28415 -10.85988 -10.61404 -10.57178 -9.85356 -9.57763 -8.62375 -8.53196 -6.35425 -0.38340 0.13395 0.26573 0.75505 1.04653 1.28381 1.38816 1.53046 1.65864 1.67851 2.13516 2.16240 2.50066 2.76338 3.31904 3.54817 3.65892 3.89340 4.10591 4.21634 4.35608 4.47073 4.62779 4.64903 4.73942 4.83882 4.85730 4.90410 4.94816 4.96328 5.00577 5.04781 5.19586 5.37040 5.38712 5.43731 5.49437 5.60047 5.97798 6.06873 6.75469 6.75998 6.80286 8.50342 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.003432 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.420254 B = 8156.818258 C = 9545.448194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.487 5.487 4 C 0.233 3.767 5 N -0.600 5.600 6 C 0.553 3.447 7 O -0.540 6.540 8 C -0.227 4.227 9 C -0.020 4.020 10 C -0.117 4.117 11 C -0.097 4.097 12 C -0.114 4.114 13 C -0.086 4.086 14 S 0.165 5.835 15 C -0.278 4.278 16 S 0.062 5.938 17 C -0.568 4.568 18 H 0.067 0.933 19 C 0.048 3.952 20 N -0.908 5.908 21 Si 0.915 3.085 22 H -0.252 1.252 23 H -0.254 1.254 24 H -0.219 1.219 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.434 0.566 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 23.065 0.211 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 N -0.209 5.209 4 C -0.139 4.139 5 N -0.251 5.251 6 C 0.345 3.655 7 O -0.419 6.419 8 C -0.230 4.230 9 C -0.022 4.022 10 C -0.173 4.173 11 C -0.133 4.133 12 C -0.152 4.152 13 C -0.123 4.123 14 S 0.411 5.589 15 C -0.513 4.513 16 S 0.307 5.693 17 C -0.716 4.716 18 H 0.085 0.915 19 C -0.159 4.159 20 N -0.543 5.543 21 Si 0.734 3.266 22 H -0.176 1.176 23 H -0.177 1.177 24 H -0.142 1.142 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.275 0.725 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.094 21.552 0.202 21.938 hybrid contribution 0.217 -0.360 -0.013 0.421 sum 4.311 21.192 0.189 21.627 Atomic orbital electron populations 1.20323 0.84967 1.03569 1.03526 1.19872 0.98720 0.83895 1.06381 1.66114 1.02434 1.31311 1.21050 1.24227 0.90378 0.93216 1.06093 1.42439 1.03995 1.07885 1.70814 1.18968 0.81155 0.89938 0.75457 1.90805 1.77450 1.23951 1.49651 1.21358 0.93260 0.94896 1.13480 1.23309 0.93593 0.97935 0.87376 1.20727 1.00946 0.93371 1.02262 1.21563 0.99226 0.88747 1.03794 1.22429 0.91958 0.98742 1.02029 1.21293 1.00011 0.87780 1.03246 1.86529 1.02159 0.97632 1.72540 1.28124 1.01533 1.04566 1.17045 1.81854 1.10760 0.89322 1.87401 1.22845 0.93254 0.95470 1.60020 0.91542 1.25735 1.01424 0.96825 0.91868 1.70123 1.29093 1.08252 1.46863 0.85885 0.79191 0.80478 0.81067 1.17620 1.17736 1.14230 0.89793 0.90759 0.89284 0.72450 0.91762 0.88935 0.92146 0.88320 0.87602 0.90287 0.87959 0.90067 0.88876 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.01 10.02 71.24 0.71 -1.29 16 2 C 0.05 2.12 6.73 41.78 0.28 2.40 16 3 N -0.49 -18.78 10.55 -184.95 -1.95 -20.73 16 4 C 0.23 9.06 8.39 179.19 1.50 10.56 16 5 N -0.60 -17.92 5.38 -312.95 -1.68 -19.60 16 6 C 0.55 17.07 7.74 86.55 0.67 17.74 16 7 O -0.54 -21.44 12.28 -4.15 -0.05 -21.49 16 8 C -0.23 -4.81 6.09 -18.60 -0.11 -4.92 16 9 C -0.02 -0.38 6.24 -17.48 -0.11 -0.49 16 10 C -0.12 -2.56 8.80 71.24 0.63 -1.93 16 11 C -0.10 -0.96 6.74 30.51 0.21 -0.75 16 12 C -0.11 -0.92 7.16 31.67 0.23 -0.70 16 13 C -0.09 -1.07 5.96 30.51 0.18 -0.89 16 14 S 0.17 7.86 18.34 -56.49 -1.04 6.83 16 15 C -0.28 -13.01 6.67 67.00 0.45 -12.56 16 16 S 0.06 3.03 18.70 -56.49 -1.06 1.97 16 17 C -0.57 -33.54 9.80 67.87 0.67 -32.87 16 18 H 0.07 4.33 6.21 -2.91 -0.02 4.31 16 19 C 0.05 2.78 5.49 84.74 0.47 3.25 16 20 N -0.91 -55.28 13.98 21.59 0.30 -54.97 16 21 Si 0.91 41.33 27.73 68.60 1.90 43.23 16 22 H -0.25 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.25 -10.82 7.11 99.48 0.71 -10.12 16 24 H -0.22 -9.21 6.73 99.48 0.67 -8.54 16 25 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.07 2.29 7.37 -2.39 -0.02 2.27 16 27 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.43 9.48 7.95 -92.71 -0.74 8.74 16 29 H 0.06 1.69 7.84 -2.39 -0.02 1.67 16 30 H 0.09 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.06 1.60 7.79 -2.39 -0.02 1.58 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.08 0.90 8.00 -2.38 -0.02 0.88 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.28 15.64 8.32 -92.70 -0.77 14.87 16 Total: -1.00 -74.91 342.35 2.52 -72.39 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.33 Total: 14.83 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 5.77 Total: -22.45 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -3.33 Total: -95.31 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.05 Total: -21.49 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.90 Total: 43.23 kcal Atomic # 16 Polarization: 10.89 SS G_CDS: -2.09 Total: 8.80 kcal Total: -74.91 2.52 -72.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533011156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.677 kcal (2) G-P(sol) polarization free energy of solvation -74.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds