Wall clock time and date at job start Tue Mar 31 2020 14:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86797 * 120.00486 * 2 1 4 4 H 1.48501 * 109.47250 * 274.99927 * 3 2 1 5 5 H 1.48506 * 109.46958 * 34.99885 * 3 2 1 6 6 H 1.48503 * 109.47417 * 154.99778 * 3 2 1 7 7 C 1.40131 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99824 * 174.96946 * 7 2 1 9 9 C 1.46172 * 119.99893 * 354.96464 * 7 2 1 10 10 O 1.21738 * 120.00026 * 5.03198 * 9 7 2 11 11 N 1.34777 * 119.99694 * 185.03001 * 9 7 2 12 12 C 1.39534 * 119.99638 * 184.60565 * 11 9 7 13 13 C 1.39054 * 120.08612 * 324.89227 * 12 11 9 14 14 C 1.38034 * 119.91816 * 179.97438 * 13 12 11 15 15 C 1.38356 * 120.08243 * 0.02562 * 14 13 12 16 16 C 1.38309 * 120.16501 * 0.02562 * 15 14 13 17 17 S 1.76210 * 119.95380 * 179.97438 * 16 15 14 18 18 O 1.42091 * 106.40199 * 336.46101 * 17 16 15 19 19 O 1.42104 * 106.39750 * 203.53942 * 17 16 15 20 20 N 1.65601 * 107.21544 * 90.00294 * 17 16 15 21 21 C 1.47020 * 125.64602 * 269.68807 * 20 17 16 22 22 C 1.54320 * 107.27213 * 180.97121 * 21 20 17 23 23 C 1.55155 * 102.86544 * 22.52541 * 22 21 20 24 24 C 1.47427 * 125.64873 * 89.99974 * 20 17 16 25 25 C 1.38078 * 120.08460 * 0.23692 * 16 15 14 26 26 H 0.97006 * 119.99468 * 359.97438 * 1 2 3 27 27 H 0.96991 * 120.00143 * 4.61376 * 11 9 7 28 28 H 1.08001 * 120.04047 * 359.95750 * 13 12 11 29 29 H 1.07994 * 119.95977 * 179.97438 * 14 13 12 30 30 H 1.08000 * 119.91474 * 179.97438 * 15 14 13 31 31 H 1.08993 * 109.88278 * 300.51393 * 21 20 17 32 32 H 1.08992 * 109.88374 * 61.68437 * 21 20 17 33 33 H 1.08996 * 110.92410 * 264.10984 * 22 21 20 34 34 H 1.09001 * 110.58737 * 140.78468 * 22 21 20 35 35 H 1.08992 * 111.00361 * 206.22509 * 23 22 21 36 36 H 1.09007 * 111.03472 * 82.38857 * 23 22 21 37 37 H 1.09004 * 110.36269 * 274.67175 * 24 20 17 38 38 H 1.09001 * 110.36665 * 36.88280 * 24 20 17 39 39 H 1.08000 * 120.04092 * 179.74436 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.3824 2.1073 -1.3947 5 1 1.4948 2.6198 0.8031 6 1 3.5869 1.4118 0.5917 7 6 2.0070 -1.2136 -0.0005 8 1 3.0838 -1.2154 -0.0826 9 6 1.2802 -2.4770 0.1100 10 8 0.0629 -2.4810 0.1102 11 7 1.9580 -3.6376 0.2116 12 6 1.2676 -4.8501 0.2203 13 6 0.0220 -4.9387 0.8320 14 6 -0.6581 -6.1399 0.8381 15 6 -0.1018 -7.2549 0.2370 16 6 1.1374 -7.1709 -0.3715 17 16 1.8411 -8.5947 -1.1348 18 8 1.2366 -9.7219 -0.5159 19 8 3.2460 -8.3828 -1.1611 20 7 1.3398 -8.6029 -2.7131 21 6 0.1233 -9.2527 -3.2223 22 6 0.0825 -9.0182 -4.7470 23 6 1.5696 -8.7436 -5.0942 24 6 2.0429 -7.9654 -3.8412 25 6 1.8262 -5.9742 -0.3769 26 1 -0.4850 0.8401 0.0004 27 1 2.9255 -3.6299 0.2788 28 1 -0.4126 -4.0689 1.3021 29 1 -1.6254 -6.2095 1.3134 30 1 -0.6361 -8.1935 0.2438 31 1 0.1574 -10.3213 -3.0105 32 1 -0.7567 -8.8084 -2.7573 33 1 -0.5363 -8.1550 -4.9917 34 1 -0.2756 -9.9094 -5.2625 35 1 1.6546 -8.1296 -5.9907 36 1 2.1235 -9.6756 -5.2075 37 1 1.7619 -6.9150 -3.9184 38 1 3.1218 -8.0607 -3.7185 39 1 2.7956 -5.9105 -0.8487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548445352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:36 Heat of formation + Delta-G solvation = -82.133651 kcal Electronic energy + Delta-G solvation = -25077.086090 eV Core-core repulsion = 21304.498028 eV Total energy + Delta-G solvation = -3772.588062 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.36817 -38.47136 -37.19944 -37.07536 -35.79526 -33.62739 -32.58148 -31.11366 -30.81097 -29.24872 -29.14057 -26.35287 -23.16308 -22.63698 -22.27993 -21.41595 -20.33996 -18.89116 -17.83529 -17.70304 -17.35432 -16.41942 -15.83069 -15.68005 -15.37068 -15.07322 -14.50717 -14.11495 -14.04031 -13.82898 -13.52129 -13.46550 -13.04059 -12.84515 -12.61564 -12.25143 -12.09240 -12.01558 -11.89188 -11.72466 -11.53148 -11.50672 -11.36506 -11.27671 -11.13792 -10.93434 -10.76566 -10.59221 -10.41765 -9.59906 -9.13870 -9.01373 -8.90263 -7.87537 -7.35456 -6.45977 -4.92781 0.40494 1.24363 1.73013 2.99030 3.01338 3.08827 3.12596 3.73469 3.90535 3.99640 4.11071 4.33756 4.37761 4.46354 4.66399 4.74552 5.09939 5.15501 5.26122 5.31018 5.35048 5.49274 5.52671 5.62943 5.64083 5.67867 5.73752 5.80629 5.91104 5.98103 6.03354 6.12492 6.25373 6.36811 6.77840 6.84027 7.09841 7.20141 7.58616 7.88790 8.04137 8.74885 9.07074 10.24522 10.44661 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.003249 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.442622 B = 8615.089999 C = 9100.013515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.542 3.458 10 O -0.562 6.562 11 N -0.700 5.700 12 C 0.173 3.827 13 C -0.073 4.073 14 C -0.122 4.122 15 C -0.066 4.066 16 C -0.657 4.657 17 S 2.713 3.287 18 O -0.960 6.960 19 O -0.958 6.958 20 N -1.013 6.013 21 C 0.119 3.881 22 C -0.129 4.129 23 C -0.129 4.129 24 C 0.113 3.887 25 C -0.078 4.078 26 H 0.273 0.727 27 H 0.396 0.604 28 H 0.151 0.849 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 -15.075 -7.466 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.092 0.908 9 C 0.350 3.650 10 O -0.445 6.445 11 N -0.343 5.343 12 C 0.073 3.927 13 C -0.095 4.095 14 C -0.142 4.142 15 C -0.087 4.087 16 C -0.746 4.746 17 S 2.807 3.193 18 O -0.950 6.950 19 O -0.949 6.949 20 N -0.852 5.852 21 C -0.006 4.006 22 C -0.168 4.168 23 C -0.168 4.168 24 C -0.012 4.012 25 C -0.101 4.101 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.169 0.831 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.811 -15.458 -6.999 16.988 hybrid contribution 0.414 1.601 0.096 1.656 sum 1.225 -13.857 -6.903 15.530 Atomic orbital electron populations 1.69986 1.07227 1.27949 1.33422 1.25756 0.94717 1.00618 0.92403 0.86242 0.80266 0.80780 0.78903 1.19598 1.20176 1.18625 1.20856 0.94265 0.88963 1.53203 0.90795 1.18426 0.87434 0.82033 0.77137 1.90608 1.13711 1.85553 1.54610 1.44169 1.09926 1.04030 1.76209 1.18029 0.93666 0.86651 0.94332 1.21894 0.94317 0.98108 0.95147 1.21153 1.00067 0.92513 1.00459 1.20628 0.92951 0.98778 0.96367 1.30407 1.07818 1.17640 1.18723 1.01183 0.73234 0.73806 0.71047 1.93546 1.78553 1.48544 1.74373 1.93555 1.28719 1.86735 1.85855 1.58636 1.35274 1.67848 1.23396 1.21725 0.86419 0.97543 0.94936 1.22638 0.97146 1.02661 0.94373 1.22756 0.95903 1.00818 0.97313 1.22100 0.97297 0.96993 0.84837 1.20584 0.99934 0.91395 0.98228 0.91638 0.76985 0.83126 0.85558 0.85302 0.90999 0.91438 0.90381 0.90162 0.89862 0.90603 0.91126 0.89773 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.32 11.84 55.55 0.66 -20.66 16 2 C 0.09 2.27 5.50 -17.35 -0.10 2.17 16 3 Si 0.91 18.96 29.56 -169.99 -5.03 13.93 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.54 -14.22 9.53 -35.69 -0.34 -14.56 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.54 14.51 7.58 -13.08 -0.10 14.41 16 10 O -0.56 -16.78 12.46 5.15 0.06 -16.72 16 11 N -0.70 -15.28 5.32 -11.20 -0.06 -15.34 16 12 C 0.17 3.54 6.30 -83.77 -0.53 3.02 16 13 C -0.07 -1.50 8.69 -39.35 -0.34 -1.84 16 14 C -0.12 -2.06 10.04 -39.61 -0.40 -2.46 16 15 C -0.07 -1.04 9.52 -39.51 -0.38 -1.42 16 16 C -0.66 -10.60 5.97 -39.61 -0.24 -10.84 16 17 S 2.71 39.29 5.94 -107.50 -0.64 38.65 16 18 O -0.96 -15.38 16.85 -57.17 -0.96 -16.34 16 19 O -0.96 -15.82 16.59 -57.17 -0.95 -16.77 16 20 N -1.01 -11.87 3.70 -111.43 -0.41 -12.28 16 21 C 0.12 1.14 6.98 -3.07 -0.02 1.11 16 22 C -0.13 -0.94 6.95 -24.90 -0.17 -1.12 16 23 C -0.13 -0.96 7.08 -24.59 -0.17 -1.13 16 24 C 0.11 1.14 7.11 -2.53 -0.02 1.12 16 25 C -0.08 -1.39 9.44 -39.36 -0.37 -1.76 16 26 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 27 H 0.40 7.43 8.80 -40.82 -0.36 7.07 16 28 H 0.15 3.46 6.22 -52.49 -0.33 3.13 16 29 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.13 1.70 7.61 -52.49 -0.40 1.30 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.84 7.78 -51.93 -0.40 0.43 16 39 H 0.13 2.13 7.61 -52.49 -0.40 1.73 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -34.71 343.49 -10.14 -44.85 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.82 Total: 8.79 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -3.17 Total: -13.29 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.19 Total: -48.29 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -1.85 Total: -49.83 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Atomic # 16 Polarization: 39.29 SS G_CDS: -0.64 Total: 38.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.71 -10.14 -44.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548445352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.286 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds