Wall clock time and date at job start Tue Mar 31 2020 14:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86797 * 120.00486 * 2 1 4 4 H 1.48501 * 109.47250 * 274.99927 * 3 2 1 5 5 H 1.48506 * 109.46958 * 34.99885 * 3 2 1 6 6 H 1.48503 * 109.47417 * 154.99778 * 3 2 1 7 7 C 1.40131 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99824 * 174.96946 * 7 2 1 9 9 C 1.46172 * 119.99893 * 354.96464 * 7 2 1 10 10 O 1.21738 * 120.00026 * 5.03198 * 9 7 2 11 11 N 1.34777 * 119.99694 * 185.03001 * 9 7 2 12 12 C 1.39534 * 119.99638 * 184.60565 * 11 9 7 13 13 C 1.39054 * 120.08612 * 324.89227 * 12 11 9 14 14 C 1.38034 * 119.91816 * 179.97438 * 13 12 11 15 15 C 1.38356 * 120.08243 * 0.02562 * 14 13 12 16 16 C 1.38309 * 120.16501 * 0.02562 * 15 14 13 17 17 S 1.76210 * 119.95380 * 179.97438 * 16 15 14 18 18 O 1.42091 * 106.40199 * 336.46101 * 17 16 15 19 19 O 1.42104 * 106.39750 * 203.53942 * 17 16 15 20 20 N 1.65601 * 107.21544 * 90.00294 * 17 16 15 21 21 C 1.47020 * 125.64602 * 269.68807 * 20 17 16 22 22 C 1.54320 * 107.27213 * 180.97121 * 21 20 17 23 23 C 1.55155 * 102.86544 * 22.52541 * 22 21 20 24 24 C 1.47427 * 125.64873 * 89.99974 * 20 17 16 25 25 C 1.38078 * 120.08460 * 0.23692 * 16 15 14 26 26 H 0.97006 * 119.99468 * 359.97438 * 1 2 3 27 27 H 0.96991 * 120.00143 * 4.61376 * 11 9 7 28 28 H 1.08001 * 120.04047 * 359.95750 * 13 12 11 29 29 H 1.07994 * 119.95977 * 179.97438 * 14 13 12 30 30 H 1.08000 * 119.91474 * 179.97438 * 15 14 13 31 31 H 1.08993 * 109.88278 * 300.51393 * 21 20 17 32 32 H 1.08992 * 109.88374 * 61.68437 * 21 20 17 33 33 H 1.08996 * 110.92410 * 264.10984 * 22 21 20 34 34 H 1.09001 * 110.58737 * 140.78468 * 22 21 20 35 35 H 1.08992 * 111.00361 * 206.22509 * 23 22 21 36 36 H 1.09007 * 111.03472 * 82.38857 * 23 22 21 37 37 H 1.09004 * 110.36269 * 274.67175 * 24 20 17 38 38 H 1.09001 * 110.36665 * 36.88280 * 24 20 17 39 39 H 1.08000 * 120.04092 * 179.74436 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.3824 2.1073 -1.3947 5 1 1.4948 2.6198 0.8031 6 1 3.5869 1.4118 0.5917 7 6 2.0070 -1.2136 -0.0005 8 1 3.0838 -1.2154 -0.0826 9 6 1.2802 -2.4770 0.1100 10 8 0.0629 -2.4810 0.1102 11 7 1.9580 -3.6376 0.2116 12 6 1.2676 -4.8501 0.2203 13 6 0.0220 -4.9387 0.8320 14 6 -0.6581 -6.1399 0.8381 15 6 -0.1018 -7.2549 0.2370 16 6 1.1374 -7.1709 -0.3715 17 16 1.8411 -8.5947 -1.1348 18 8 1.2366 -9.7219 -0.5159 19 8 3.2460 -8.3828 -1.1611 20 7 1.3398 -8.6029 -2.7131 21 6 0.1233 -9.2527 -3.2223 22 6 0.0825 -9.0182 -4.7470 23 6 1.5696 -8.7436 -5.0942 24 6 2.0429 -7.9654 -3.8412 25 6 1.8262 -5.9742 -0.3769 26 1 -0.4850 0.8401 0.0004 27 1 2.9255 -3.6299 0.2788 28 1 -0.4126 -4.0689 1.3021 29 1 -1.6254 -6.2095 1.3134 30 1 -0.6361 -8.1935 0.2438 31 1 0.1574 -10.3213 -3.0105 32 1 -0.7567 -8.8084 -2.7573 33 1 -0.5363 -8.1550 -4.9917 34 1 -0.2756 -9.9094 -5.2625 35 1 1.6546 -8.1296 -5.9907 36 1 2.1235 -9.6756 -5.2075 37 1 1.7619 -6.9150 -3.9184 38 1 3.1218 -8.0607 -3.7185 39 1 2.7956 -5.9105 -0.8487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548445352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:35 Heat of formation + Delta-G solvation = -107.618220 kcal Electronic energy + Delta-G solvation = -25078.191184 eV Core-core repulsion = 21304.498028 eV Total energy + Delta-G solvation = -3773.693155 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97763 -39.21956 -38.87274 -38.42149 -37.04061 -35.42981 -34.58659 -32.26182 -31.84942 -30.84770 -29.88206 -28.28652 -24.58052 -23.81963 -23.51294 -22.14515 -21.97431 -20.01829 -19.56762 -19.07415 -18.56089 -17.70542 -17.29416 -17.16647 -16.69198 -16.49729 -16.00644 -15.78696 -14.95009 -14.92883 -14.76731 -14.64877 -14.42107 -14.22584 -13.87944 -13.53038 -13.38230 -13.35143 -13.29640 -13.21250 -12.88171 -12.76177 -12.70617 -12.62713 -12.12497 -12.05588 -12.02501 -11.98219 -11.50725 -11.25411 -10.95369 -10.39232 -10.00933 -9.89477 -9.02148 -8.42287 -6.99622 -0.76269 -0.16677 0.28470 1.37913 1.39388 1.55877 1.89978 2.17724 2.27872 2.50195 2.73374 2.78394 3.15027 3.48518 3.64643 3.78572 3.89963 4.03641 4.14325 4.18970 4.39303 4.40383 4.50385 4.60605 4.62071 4.74484 4.91321 4.93393 5.02215 5.05686 5.07932 5.20143 5.21590 5.30723 5.33577 5.39887 5.48165 5.61795 5.73651 6.08218 6.22487 6.73556 7.22862 8.26197 8.50983 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.003249 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.442622 B = 8615.089999 C = 9100.013515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.032 3.968 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.565 4.565 8 H 0.093 0.907 9 C 0.530 3.470 10 O -0.605 6.605 11 N -0.694 5.694 12 C 0.141 3.859 13 C -0.100 4.100 14 C -0.117 4.117 15 C -0.057 4.057 16 C -0.659 4.659 17 S 2.737 3.263 18 O -0.971 6.971 19 O -0.978 6.978 20 N -1.011 6.011 21 C 0.105 3.895 22 C -0.124 4.124 23 C -0.123 4.123 24 C 0.100 3.900 25 C -0.074 4.074 26 H 0.279 0.721 27 H 0.409 0.591 28 H 0.116 0.884 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 -16.345 -8.860 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.185 4.185 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.600 4.600 8 H 0.111 0.889 9 C 0.337 3.663 10 O -0.491 6.491 11 N -0.338 5.338 12 C 0.043 3.957 13 C -0.121 4.121 14 C -0.137 4.137 15 C -0.077 4.077 16 C -0.746 4.746 17 S 2.829 3.171 18 O -0.962 6.962 19 O -0.969 6.969 20 N -0.852 5.852 21 C -0.020 4.020 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.025 4.025 25 C -0.097 4.097 26 H 0.089 0.911 27 H 0.244 0.756 28 H 0.133 0.867 29 H 0.173 0.827 30 H 0.180 0.820 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.569 -16.766 -8.372 18.806 hybrid contribution 0.143 1.792 0.482 1.861 sum 1.712 -14.974 -7.890 17.012 Atomic orbital electron populations 1.70133 1.09526 1.29491 1.34744 1.26979 0.95549 1.04908 0.91017 0.84954 0.78919 0.74837 0.79343 1.18576 1.19637 1.17170 1.21397 0.95397 0.89589 1.53660 0.88897 1.18746 0.87188 0.83566 0.76792 1.90569 1.15434 1.86646 1.56414 1.43730 1.10392 1.03674 1.76053 1.18248 0.94272 0.86869 0.96296 1.21749 0.95156 0.98529 0.96710 1.21425 1.00861 0.91397 0.99974 1.21046 0.92682 0.99485 0.94490 1.30879 1.07821 1.17749 1.18136 1.00463 0.72462 0.72793 0.71406 1.93526 1.78684 1.48553 1.75402 1.93527 1.30090 1.86782 1.86488 1.58473 1.36376 1.67848 1.22479 1.22053 0.85440 0.97879 0.96612 1.22667 0.97095 1.03815 0.92724 1.22784 0.95902 1.01087 0.96397 1.22350 0.97289 0.97292 0.85552 1.20693 1.00472 0.90942 0.97557 0.91109 0.75553 0.86651 0.82740 0.82040 0.90157 0.91123 0.90278 0.87888 0.88190 0.89689 0.91515 0.89900 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.19 11.84 21.85 0.26 -46.93 16 2 C 0.03 1.71 5.50 85.33 0.47 2.18 16 3 Si 1.00 38.91 29.56 68.60 2.03 40.93 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 7 C -0.56 -30.61 9.53 24.79 0.24 -30.37 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 9 C 0.53 29.65 7.58 86.30 0.65 30.30 16 10 O -0.60 -38.23 12.46 -4.47 -0.06 -38.29 16 11 N -0.69 -31.55 5.32 -307.53 -1.64 -33.18 16 12 C 0.14 5.98 6.30 38.29 0.24 6.22 16 13 C -0.10 -4.27 8.69 22.42 0.19 -4.08 16 14 C -0.12 -3.91 10.04 22.25 0.22 -3.69 16 15 C -0.06 -1.68 9.52 22.31 0.21 -1.47 16 16 C -0.66 -20.49 5.97 22.25 0.13 -20.36 16 17 S 2.74 74.62 5.94 -56.49 -0.34 74.28 16 18 O -0.97 -28.95 16.85 -128.00 -2.16 -31.10 16 19 O -0.98 -31.07 16.59 -128.00 -2.12 -33.19 16 20 N -1.01 -21.66 3.70 -506.45 -1.87 -23.53 16 21 C 0.10 1.72 6.98 86.73 0.61 2.32 16 22 C -0.12 -1.42 6.95 31.78 0.22 -1.20 16 23 C -0.12 -1.47 7.08 31.98 0.23 -1.24 16 24 C 0.10 1.83 7.11 86.85 0.62 2.45 16 25 C -0.07 -2.62 9.44 22.42 0.21 -2.41 16 26 H 0.28 14.65 8.29 -92.70 -0.77 13.88 16 27 H 0.41 15.80 8.80 -92.71 -0.82 14.99 16 28 H 0.12 5.74 6.22 -2.91 -0.02 5.72 16 29 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.16 3.74 7.61 -2.91 -0.02 3.72 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.53 7.78 -2.39 -0.02 1.51 16 39 H 0.15 4.65 7.61 -2.91 -0.02 4.63 16 Total: -1.00 -77.87 343.49 -1.37 -79.24 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.27 Total: 33.10 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 4.25 Total: -21.33 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -3.25 Total: -103.64 kcal Atomic # 8 Polarization: -98.25 SS G_CDS: -4.34 Total: -102.59 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.93 kcal Atomic # 16 Polarization: 74.62 SS G_CDS: -0.34 Total: 74.28 kcal Total: -77.87 -1.37 -79.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548445352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.375 kcal (2) G-P(sol) polarization free energy of solvation -77.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds