Wall clock time and date at job start Tue Mar 31 2020 14:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30842 * 1 3 3 Si 1.86805 * 119.99925 * 2 1 4 4 H 1.48499 * 109.47021 * 275.14316 * 3 2 1 5 5 H 1.48501 * 109.47151 * 35.14163 * 3 2 1 6 6 H 1.48503 * 109.47229 * 155.14518 * 3 2 1 7 7 C 1.39977 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99780 * 347.86834 * 7 2 1 9 9 C 1.41044 * 119.99822 * 167.87126 * 7 2 1 10 10 C 1.40743 * 120.30696 * 330.82808 * 9 7 2 11 11 C 1.36447 * 119.94568 * 180.02562 * 10 9 7 12 12 C 1.38882 * 120.58754 * 359.74254 * 11 10 9 13 13 C 1.38201 * 120.61728 * 0.52117 * 12 11 10 14 14 C 1.38688 * 120.03210 * 359.48423 * 13 12 11 15 15 N 1.38999 * 120.28663 * 180.27693 * 14 13 12 16 16 C 1.34775 * 120.00043 * 20.00632 * 15 14 13 17 17 O 1.21511 * 120.00173 * 5.37593 * 16 15 14 18 18 C 1.48285 * 119.99751 * 185.38010 * 16 15 14 19 19 C 1.41752 * 126.81258 * 179.97438 * 18 16 15 20 20 C 1.37142 * 103.79302 * 179.97438 * 19 18 16 21 21 C 1.47008 * 126.85545 * 179.97438 * 20 19 18 22 22 C 1.36345 * 125.96901 * 179.97438 * 21 20 19 23 23 C 1.40702 * 106.71772 * 179.97438 * 22 21 20 24 24 C 1.34883 * 107.08616 * 0.02562 * 23 22 21 25 25 O 1.34232 * 108.73129 * 359.76822 * 24 23 22 26 26 O 1.34587 * 106.29220 * 0.02562 * 20 19 18 27 27 N 1.20875 * 111.69889 * 359.72798 * 26 20 19 28 28 H 0.96994 * 120.00231 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.02277 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.70535 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.69381 * 180.27683 * 12 11 10 32 32 H 1.08008 * 119.98177 * 179.76210 * 13 12 11 33 33 H 0.96998 * 120.00211 * 200.00085 * 15 14 13 34 34 H 1.07995 * 128.10288 * 359.94009 * 19 18 16 35 35 H 1.08003 * 126.63581 * 359.93979 * 22 21 20 36 36 H 1.08004 * 126.45097 * 179.97438 * 23 22 21 37 37 H 1.07991 * 125.63769 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3812 2.1092 -1.3944 5 1 1.4984 2.6189 0.8059 6 1 3.5901 1.4113 0.5885 7 6 2.0084 -1.2122 0.0005 8 1 1.4865 -2.1370 0.1975 9 6 3.3952 -1.2258 -0.2561 10 6 3.9754 -0.2402 -1.0763 11 6 5.3178 -0.2607 -1.3201 12 6 6.1226 -1.2448 -0.7611 13 6 5.5771 -2.2273 0.0434 14 6 4.2157 -2.2310 0.3082 15 7 3.6624 -3.2132 1.1213 16 6 4.4475 -3.9083 1.9679 17 8 5.6193 -3.6115 2.0922 18 6 3.8814 -5.0354 2.7477 19 6 4.5708 -5.8592 3.6727 20 6 3.6098 -6.7339 4.1109 21 6 3.7834 -7.8164 5.0903 22 6 2.8138 -8.6764 5.5138 23 6 3.4182 -9.5412 6.4446 24 6 4.7120 -9.1734 6.5453 25 8 4.9302 -8.1351 5.7230 26 8 2.4762 -6.4044 3.4645 27 7 2.6420 -5.4649 2.7222 28 1 -0.4850 0.8400 -0.0004 29 1 3.3586 0.5317 -1.5123 30 1 5.7589 0.4973 -1.9504 31 1 7.1841 -1.2447 -0.9600 32 1 6.2120 -2.9900 0.4698 33 1 2.7112 -3.3983 1.0794 34 1 5.6096 -5.8098 3.9637 35 1 1.7815 -8.6905 5.1965 36 1 2.9366 -10.3471 6.9785 37 1 5.4513 -9.6400 7.1792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568653870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:05 Heat of formation + Delta-G solvation = 82.310640 kcal Electronic energy + Delta-G solvation = -25410.250085 eV Core-core repulsion = 21509.348911 eV Total energy + Delta-G solvation = -3900.901173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.16796 -42.91876 -39.83478 -37.53246 -34.24949 -34.11505 -33.68702 -33.65272 -32.81755 -30.52607 -29.14878 -28.81870 -25.53760 -24.59359 -23.61095 -22.61563 -21.90533 -21.67102 -20.52453 -19.66389 -18.79447 -17.99963 -17.53843 -17.13338 -16.82991 -16.47432 -16.37762 -15.29420 -15.12465 -14.70637 -14.31549 -14.07749 -13.90569 -13.48609 -13.33358 -13.16376 -13.10669 -12.76008 -12.44724 -12.25484 -11.81253 -11.75721 -11.29584 -10.95563 -10.81280 -10.68206 -10.48150 -10.26405 -10.08494 -9.89323 -9.69066 -9.47390 -8.98029 -8.50472 -7.70620 -7.16558 -7.02881 -4.55529 0.39761 1.24368 1.74956 1.82467 2.38610 2.48831 2.62979 3.05704 3.15791 3.24627 3.28395 3.40246 3.51824 3.90574 3.92197 4.25261 4.47676 4.53114 4.57385 4.76498 5.01999 5.19628 5.31378 5.41059 5.45006 5.56680 5.69411 5.99957 6.02256 6.09827 6.28265 6.51596 6.57548 6.63223 6.85904 7.10816 7.22996 7.40001 7.56972 7.76379 7.80071 7.89659 8.14883 8.18523 8.44361 8.60137 8.69272 9.98821 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002851 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.178719 B = 9818.156514 C =10847.574034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.084 3.916 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.239 1.239 7 C -0.448 4.448 8 H 0.089 0.911 9 C 0.084 3.916 10 C -0.223 4.223 11 C -0.086 4.086 12 C -0.226 4.226 13 C -0.089 4.089 14 C 0.024 3.976 15 N -0.612 5.612 16 C 0.577 3.423 17 O -0.519 6.519 18 C -0.009 4.009 19 C -0.148 4.148 20 C 0.026 3.974 21 C 0.048 3.952 22 C -0.160 4.160 23 C -0.214 4.214 24 C -0.017 4.017 25 O -0.158 6.158 26 O 0.144 5.856 27 N -0.318 5.318 28 H 0.287 0.713 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.415 0.585 34 H 0.187 0.813 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -15.392 11.064 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.162 1.162 7 C -0.477 4.477 8 H 0.107 0.893 9 C 0.080 3.920 10 C -0.242 4.242 11 C -0.105 4.105 12 C -0.246 4.246 13 C -0.109 4.109 14 C -0.070 4.070 15 N -0.253 5.253 16 C 0.361 3.639 17 O -0.395 6.395 18 C -0.167 4.167 19 C -0.170 4.170 20 C -0.037 4.037 21 C -0.003 4.003 22 C -0.180 4.180 23 C -0.233 4.233 24 C -0.086 4.086 25 O -0.054 6.054 26 O 0.065 5.935 27 N -0.016 5.016 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.149 0.851 33 H 0.252 0.748 34 H 0.205 0.795 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.631 -14.499 10.389 18.428 hybrid contribution 0.180 0.454 0.342 0.597 sum 4.811 -14.045 10.731 18.318 Atomic orbital electron populations 1.69640 1.07955 1.30430 1.35099 1.26120 0.94855 1.01707 0.90846 0.86280 0.81376 0.79402 0.78811 1.19673 1.22077 1.16202 1.19242 0.91075 0.95584 1.41777 0.89319 1.17449 0.93159 0.90238 0.91136 1.20509 0.95112 1.03176 1.05428 1.20394 0.93837 0.97610 0.98625 1.20344 0.98066 0.99539 1.06625 1.21134 0.93501 0.98848 0.97433 1.17591 0.92602 0.95661 1.01099 1.42777 1.12204 1.34131 1.36154 1.16773 0.86015 0.81303 0.79802 1.90695 1.15845 1.67304 1.65680 1.23495 0.90095 1.01177 1.01960 1.22717 1.02015 0.94480 0.97782 1.20456 0.87039 0.97720 0.98509 1.18058 0.85341 0.97845 0.99077 1.22014 1.00584 0.95902 0.99480 1.21824 0.94574 1.03710 1.03177 1.24336 0.98687 0.89475 0.96105 1.84071 1.33156 1.42652 1.45502 1.84953 1.31814 1.36179 1.40587 1.74260 1.18565 0.99859 1.08929 0.90260 0.88025 0.88674 0.88344 0.85094 0.74830 0.79526 0.82147 0.82547 0.77122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.05 13.93 55.55 0.77 -20.28 16 2 C 0.08 2.16 5.48 -17.32 -0.09 2.06 16 3 Si 0.91 20.70 24.36 -169.99 -4.14 16.56 16 4 H -0.27 -5.90 6.79 56.52 0.38 -5.51 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.24 -5.60 6.43 56.52 0.36 -5.24 16 7 C -0.45 -11.68 9.12 -37.87 -0.35 -12.02 16 8 H 0.09 2.36 6.88 -52.49 -0.36 1.99 16 9 C 0.08 2.12 5.20 -106.65 -0.55 1.56 16 10 C -0.22 -5.33 6.82 -39.28 -0.27 -5.60 16 11 C -0.09 -1.88 9.96 -39.99 -0.40 -2.28 16 12 C -0.23 -4.88 10.04 -39.36 -0.39 -5.28 16 13 C -0.09 -2.04 8.77 -39.43 -0.35 -2.38 16 14 C 0.02 0.58 6.53 -83.21 -0.54 0.04 16 15 N -0.61 -13.11 5.20 -10.20 -0.05 -13.17 16 16 C 0.58 11.53 7.69 -12.13 -0.09 11.43 16 17 O -0.52 -11.22 13.85 5.36 0.07 -11.15 16 18 C -0.01 -0.16 7.17 -82.66 -0.59 -0.75 16 19 C -0.15 -2.05 10.96 -38.64 -0.42 -2.48 16 20 C 0.03 0.32 7.29 -36.43 -0.27 0.06 16 21 C 0.05 0.50 7.17 -36.71 -0.26 0.24 16 22 C -0.16 -1.38 10.86 -39.33 -0.43 -1.81 16 23 C -0.21 -1.42 10.88 -39.84 -0.43 -1.86 16 24 C -0.02 -0.11 12.08 29.54 0.36 0.25 16 25 O -0.16 -1.54 10.67 4.53 0.05 -1.49 16 26 O 0.14 1.97 11.21 15.71 0.18 2.14 16 27 N -0.32 -5.13 11.82 33.36 0.39 -4.74 16 28 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 29 H 0.10 2.39 4.19 -52.49 -0.22 2.17 16 30 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.13 2.94 5.43 -52.48 -0.29 2.65 16 33 H 0.41 8.61 6.91 -40.82 -0.28 8.33 16 34 H 0.19 2.28 8.06 -52.49 -0.42 1.85 16 35 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 36 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 37 H 0.21 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -29.79 327.44 -5.76 -35.55 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -2.88 Total: 10.45 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -5.09 Total: -18.81 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 1.11 Total: -38.18 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.30 Total: -10.49 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.14 Total: 16.56 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.79 -5.76 -35.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568653870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.860 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds