Wall clock time and date at job start Tue Mar 31 2020 14:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30842 * 1 3 3 Si 1.86805 * 119.99925 * 2 1 4 4 H 1.48499 * 109.47021 * 275.14316 * 3 2 1 5 5 H 1.48501 * 109.47151 * 35.14163 * 3 2 1 6 6 H 1.48503 * 109.47229 * 155.14518 * 3 2 1 7 7 C 1.39977 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99780 * 347.86834 * 7 2 1 9 9 C 1.41044 * 119.99822 * 167.87126 * 7 2 1 10 10 C 1.40743 * 120.30696 * 330.82808 * 9 7 2 11 11 C 1.36447 * 119.94568 * 180.02562 * 10 9 7 12 12 C 1.38882 * 120.58754 * 359.74254 * 11 10 9 13 13 C 1.38201 * 120.61728 * 0.52117 * 12 11 10 14 14 C 1.38688 * 120.03210 * 359.48423 * 13 12 11 15 15 N 1.38999 * 120.28663 * 180.27693 * 14 13 12 16 16 C 1.34775 * 120.00043 * 20.00632 * 15 14 13 17 17 O 1.21511 * 120.00173 * 5.37593 * 16 15 14 18 18 C 1.48285 * 119.99751 * 185.38010 * 16 15 14 19 19 C 1.41752 * 126.81258 * 179.97438 * 18 16 15 20 20 C 1.37142 * 103.79302 * 179.97438 * 19 18 16 21 21 C 1.47008 * 126.85545 * 179.97438 * 20 19 18 22 22 C 1.36345 * 125.96901 * 179.97438 * 21 20 19 23 23 C 1.40702 * 106.71772 * 179.97438 * 22 21 20 24 24 C 1.34883 * 107.08616 * 0.02562 * 23 22 21 25 25 O 1.34232 * 108.73129 * 359.76822 * 24 23 22 26 26 O 1.34587 * 106.29220 * 0.02562 * 20 19 18 27 27 N 1.20875 * 111.69889 * 359.72798 * 26 20 19 28 28 H 0.96994 * 120.00231 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.02277 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.70535 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.69381 * 180.27683 * 12 11 10 32 32 H 1.08008 * 119.98177 * 179.76210 * 13 12 11 33 33 H 0.96998 * 120.00211 * 200.00085 * 15 14 13 34 34 H 1.07995 * 128.10288 * 359.94009 * 19 18 16 35 35 H 1.08003 * 126.63581 * 359.93979 * 22 21 20 36 36 H 1.08004 * 126.45097 * 179.97438 * 23 22 21 37 37 H 1.07991 * 125.63769 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3812 2.1092 -1.3944 5 1 1.4984 2.6189 0.8059 6 1 3.5901 1.4113 0.5885 7 6 2.0084 -1.2122 0.0005 8 1 1.4865 -2.1370 0.1975 9 6 3.3952 -1.2258 -0.2561 10 6 3.9754 -0.2402 -1.0763 11 6 5.3178 -0.2607 -1.3201 12 6 6.1226 -1.2448 -0.7611 13 6 5.5771 -2.2273 0.0434 14 6 4.2157 -2.2310 0.3082 15 7 3.6624 -3.2132 1.1213 16 6 4.4475 -3.9083 1.9679 17 8 5.6193 -3.6115 2.0922 18 6 3.8814 -5.0354 2.7477 19 6 4.5708 -5.8592 3.6727 20 6 3.6098 -6.7339 4.1109 21 6 3.7834 -7.8164 5.0903 22 6 2.8138 -8.6764 5.5138 23 6 3.4182 -9.5412 6.4446 24 6 4.7120 -9.1734 6.5453 25 8 4.9302 -8.1351 5.7230 26 8 2.4762 -6.4044 3.4645 27 7 2.6420 -5.4649 2.7222 28 1 -0.4850 0.8400 -0.0004 29 1 3.3586 0.5317 -1.5123 30 1 5.7589 0.4973 -1.9504 31 1 7.1841 -1.2447 -0.9600 32 1 6.2120 -2.9900 0.4698 33 1 2.7112 -3.3983 1.0794 34 1 5.6096 -5.8098 3.9637 35 1 1.7815 -8.6905 5.1965 36 1 2.9366 -10.3471 6.9785 37 1 5.4513 -9.6400 7.1792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568653870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:05 Heat of formation + Delta-G solvation = 64.094188 kcal Electronic energy + Delta-G solvation = -25411.040009 eV Core-core repulsion = 21509.348911 eV Total energy + Delta-G solvation = -3901.691098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.35943 -43.55246 -41.52201 -39.28695 -35.88368 -35.58818 -35.33239 -34.47245 -33.69748 -32.38644 -30.63785 -29.83584 -27.28151 -26.11481 -24.60783 -24.05459 -23.21441 -22.39349 -22.12320 -20.97502 -19.89279 -19.43179 -19.17695 -18.66187 -18.14909 -17.54760 -17.06935 -17.03975 -16.42578 -16.10962 -15.91016 -15.62008 -15.28210 -15.11049 -14.85153 -14.25332 -14.09091 -13.89454 -13.71998 -13.55723 -13.48845 -13.06440 -12.97193 -12.80362 -12.39250 -11.87440 -11.80011 -11.74938 -11.73508 -11.40159 -11.31510 -10.88980 -10.72744 -9.56054 -9.25567 -8.95591 -8.93251 -6.50476 -0.53481 -0.06600 0.70846 0.80179 0.90954 1.13933 1.24148 1.37468 1.47004 1.71971 1.78560 1.95255 2.08947 2.59493 2.61245 2.64975 3.18049 3.43744 3.59436 3.88000 3.93263 4.00307 4.21340 4.24006 4.40632 4.58824 4.61008 4.72541 4.75737 4.83038 4.95343 5.00305 5.08798 5.26692 5.46015 5.47859 5.60443 5.79618 5.95131 5.95985 6.00140 6.28987 6.35824 6.64863 6.68965 6.74639 6.94510 8.13670 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002851 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.178719 B = 9818.156514 C =10847.574034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.048 3.952 3 Si 0.964 3.036 4 H -0.253 1.253 5 H -0.284 1.284 6 H -0.252 1.252 7 C -0.474 4.474 8 H 0.065 0.935 9 C 0.062 3.938 10 C -0.233 4.233 11 C -0.090 4.090 12 C -0.211 4.211 13 C -0.105 4.105 14 C 0.018 3.982 15 N -0.621 5.621 16 C 0.581 3.419 17 O -0.536 6.536 18 C -0.030 4.030 19 C -0.159 4.159 20 C 0.051 3.949 21 C 0.003 3.997 22 C -0.146 4.146 23 C -0.224 4.224 24 C 0.002 3.998 25 O -0.174 6.174 26 O 0.157 5.843 27 N -0.338 5.338 28 H 0.295 0.705 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.414 0.586 34 H 0.200 0.800 35 H 0.172 0.828 36 H 0.186 0.814 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -16.597 12.306 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.167 4.167 3 Si 0.788 3.212 4 H -0.179 1.179 5 H -0.211 1.211 6 H -0.176 1.176 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.058 3.942 10 C -0.253 4.253 11 C -0.108 4.108 12 C -0.231 4.231 13 C -0.125 4.125 14 C -0.077 4.077 15 N -0.262 5.262 16 C 0.368 3.632 17 O -0.414 6.414 18 C -0.187 4.187 19 C -0.181 4.181 20 C -0.013 4.013 21 C -0.047 4.047 22 C -0.166 4.166 23 C -0.242 4.242 24 C -0.066 4.066 25 O -0.071 6.071 26 O 0.076 5.924 27 N -0.035 5.035 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.251 0.749 34 H 0.218 0.782 35 H 0.190 0.810 36 H 0.203 0.797 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 6.490 -15.697 11.611 20.575 hybrid contribution -0.261 0.507 0.124 0.584 sum 6.230 -15.190 11.735 20.180 Atomic orbital electron populations 1.69667 1.08876 1.31487 1.37126 1.26741 0.95446 1.03979 0.90495 0.85524 0.79533 0.76538 0.79574 1.17888 1.21111 1.17575 1.19215 0.91885 0.95215 1.44085 0.91740 1.17628 0.92962 0.91475 0.92169 1.20716 0.96360 1.02919 1.05260 1.20786 0.92972 0.98409 0.98654 1.20815 0.99827 0.98062 1.04356 1.21358 0.93115 0.99823 0.98230 1.17884 0.93168 0.95638 1.00998 1.42847 1.12353 1.34303 1.36663 1.17090 0.85657 0.81332 0.79147 1.90653 1.16515 1.68019 1.66201 1.23141 0.91027 1.01284 1.03201 1.22805 1.02872 0.94595 0.97820 1.20714 0.85774 0.97276 0.97498 1.17943 0.86658 0.99055 1.01025 1.22403 1.00805 0.94902 0.98510 1.22217 0.94742 1.04241 1.03033 1.25334 0.99701 0.87386 0.94212 1.84073 1.33032 1.43839 1.46121 1.84909 1.32243 1.35244 1.40046 1.74252 1.18512 1.00778 1.09938 0.89498 0.87777 0.84888 0.84917 0.84795 0.74931 0.78247 0.81034 0.79715 0.72973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.67 13.93 21.83 0.30 -45.37 16 2 C 0.05 2.56 5.48 85.26 0.47 3.03 16 3 Si 0.96 42.79 24.36 68.60 1.67 44.47 16 4 H -0.25 -10.46 6.79 99.48 0.67 -9.79 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.25 -11.59 6.43 99.48 0.64 -10.96 16 7 C -0.47 -25.92 9.12 23.38 0.21 -25.71 16 8 H 0.06 3.69 6.88 -2.91 -0.02 3.67 16 9 C 0.06 3.16 5.20 -21.18 -0.11 3.05 16 10 C -0.23 -10.98 6.82 22.46 0.15 -10.83 16 11 C -0.09 -3.69 9.96 22.01 0.22 -3.47 16 12 C -0.21 -8.61 10.04 22.42 0.22 -8.38 16 13 C -0.11 -4.76 8.77 22.37 0.20 -4.56 16 14 C 0.02 0.85 6.53 38.92 0.25 1.11 16 15 N -0.62 -27.88 5.20 -304.49 -1.58 -29.47 16 16 C 0.58 24.09 7.69 86.92 0.67 24.76 16 17 O -0.54 -23.62 13.85 -3.75 -0.05 -23.67 16 18 C -0.03 -1.06 7.17 42.78 0.31 -0.75 16 19 C -0.16 -4.45 10.96 22.88 0.25 -4.20 16 20 C 0.05 1.26 7.29 24.31 0.18 1.44 16 21 C 0.00 0.06 7.17 24.13 0.17 0.24 16 22 C -0.15 -2.20 10.86 22.43 0.24 -1.95 16 23 C -0.22 -2.18 10.88 22.10 0.24 -1.94 16 24 C 0.00 0.02 12.08 67.05 0.81 0.83 16 25 O -0.17 -3.02 10.67 -6.69 -0.07 -3.09 16 26 O 0.16 4.34 11.21 66.39 0.74 5.09 16 27 N -0.34 -11.34 11.82 -48.86 -0.58 -11.92 16 28 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 29 H 0.10 4.79 4.19 -2.91 -0.01 4.78 16 30 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 31 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.13 5.97 5.43 -2.91 -0.02 5.95 16 33 H 0.41 18.47 6.91 -92.71 -0.64 17.83 16 34 H 0.20 4.88 8.06 -2.91 -0.02 4.85 16 35 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.25 -0.15 8.06 -2.92 -0.02 -0.18 16 Total: -1.00 -66.62 327.44 5.35 -61.27 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.42 Total: 30.05 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 4.49 Total: -27.36 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -1.86 Total: -86.75 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.62 Total: -21.68 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.67 Total: 44.47 kcal Total: -66.62 5.35 -61.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568653870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.368 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds