Wall clock time and date at job start Tue Mar 31 2020 13:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36494 * 119.85219 * 2 1 4 4 S 1.76199 * 119.21523 * 359.97438 * 3 2 1 5 5 C 1.80996 * 100.00083 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47325 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47052 * 300.00158 * 6 5 4 8 8 C 1.53006 * 109.46991 * 59.99839 * 6 5 4 9 9 C 1.50692 * 109.47463 * 180.02562 * 6 5 4 10 10 H 1.08004 * 119.99969 * 0.02562 * 9 6 5 11 11 C 1.37872 * 120.00459 * 179.97438 * 9 6 5 12 12 N 1.31513 * 119.99733 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00537 * 179.97438 * 11 9 6 14 14 H 1.48507 * 109.46827 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47313 * 119.99853 * 13 11 9 16 16 H 1.48498 * 109.47556 * 240.00353 * 13 11 9 17 17 N 1.31140 * 121.56914 * 179.97438 * 3 2 1 18 18 C 1.34780 * 121.59406 * 0.02573 * 17 3 2 19 19 S 1.75896 * 130.72047 * 179.97438 * 18 17 3 20 20 C 1.75331 * 92.17456 * 180.02562 * 19 18 17 21 21 C 1.31872 * 111.31332 * 359.97438 * 20 19 18 22 22 C 1.39314 * 119.67137 * 359.97438 * 18 17 3 23 23 C 1.34712 * 119.85923 * 179.73523 * 2 1 3 24 24 O 1.21908 * 120.55142 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.46907 * 90.00029 * 1 2 3 26 26 H 1.08997 * 109.46887 * 209.99557 * 1 2 3 27 27 H 1.09001 * 109.47198 * 329.99760 * 1 2 3 28 28 H 1.09004 * 109.47132 * 300.00213 * 5 4 3 29 29 H 1.09001 * 109.46916 * 60.00060 * 5 4 3 30 30 H 1.09006 * 109.47081 * 59.99810 * 7 6 5 31 31 H 1.08995 * 109.47286 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47127 * 299.99967 * 7 6 5 33 33 H 1.08996 * 109.46622 * 60.00183 * 8 6 5 34 34 H 1.08998 * 109.46762 * 179.97438 * 8 6 5 35 35 H 1.08996 * 109.47314 * 300.00305 * 8 6 5 36 36 H 0.96999 * 120.00338 * 179.97438 * 12 11 9 37 37 H 1.08004 * 124.34382 * 180.02562 * 20 19 18 38 38 H 1.07995 * 122.59546 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1444 1.1838 0.0000 4 16 1.2387 2.6952 -0.0007 5 6 2.6061 3.8811 0.0004 6 6 2.0463 5.3050 0.0006 7 6 1.1890 5.5162 -1.2490 8 6 1.1878 5.5153 1.2495 9 6 3.1848 6.2923 0.0008 10 1 4.2055 5.9395 0.0004 11 6 2.9233 7.6460 0.0005 12 7 1.6804 8.0757 0.0005 13 14 4.3345 8.8699 0.0016 14 1 5.6258 8.1365 0.0020 15 1 4.2508 9.7231 -1.2111 16 1 4.2489 9.7232 1.2139 17 7 3.4552 1.2231 0.0005 18 6 4.1954 0.0968 0.0005 19 16 5.9397 -0.1301 0.0005 20 6 5.7797 -1.8761 -0.0002 21 6 4.5126 -2.2413 0.0001 22 6 3.5626 -1.1443 0.0005 23 6 2.1357 -1.1683 0.0054 24 8 1.5337 -2.2284 0.0098 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 3.2166 3.7309 0.8908 29 1 3.2179 3.7309 -0.8892 30 1 0.3655 4.8020 -1.2496 31 1 0.7899 6.5304 -1.2487 32 1 1.8006 5.3663 -2.1388 33 1 1.7986 5.3648 2.1397 34 1 0.7895 6.5299 1.2499 35 1 0.3644 4.8012 1.2489 36 1 1.4963 9.0280 0.0007 37 1 6.6122 -2.5642 -0.0001 38 1 4.2056 -3.2767 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568902114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:43 Heat of formation + Delta-G solvation = 17.375739 kcal Electronic energy + Delta-G solvation = -22550.454336 eV Core-core repulsion = 19224.934196 eV Total energy + Delta-G solvation = -3325.520140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53753 -37.61826 -36.82050 -36.15446 -34.10163 -31.64888 -29.68583 -28.07513 -26.41367 -25.83473 -25.23760 -24.94328 -23.83903 -21.34639 -19.69993 -18.76980 -18.14590 -16.89689 -16.57663 -16.55101 -16.11145 -15.25421 -14.83088 -14.63542 -14.01565 -13.83545 -13.75878 -13.69300 -13.14828 -12.97211 -12.93967 -12.73532 -12.34373 -12.20290 -11.51399 -11.40680 -11.20238 -10.95311 -10.87782 -10.48626 -10.45736 -10.21032 -10.16321 -10.11068 -10.00168 -9.72052 -9.56883 -8.81493 -8.76532 -8.53454 -8.42361 -7.47711 -6.10315 -4.21309 0.16186 0.96312 1.25784 1.58295 1.82338 2.00713 2.31368 2.67823 3.22483 3.31722 3.35736 3.43601 4.24488 4.33467 4.48522 4.87051 4.93097 5.10623 5.13518 5.16795 5.47263 5.52030 5.78064 5.86259 5.88133 5.97706 6.06733 6.39825 6.42252 6.67701 6.75405 6.85681 6.88987 7.22101 7.44348 7.45297 7.62110 7.69709 7.89907 8.02407 8.26672 8.78348 9.44947 10.91040 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.003759 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.786874 B = 7447.897983 C = 8911.309791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.520 5.520 3 C 0.373 3.627 4 S 0.010 5.990 5 C -0.073 4.073 6 C 0.078 3.922 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.504 4.504 10 H 0.060 0.940 11 C 0.068 3.932 12 N -0.884 5.884 13 Si 0.894 3.106 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 N -0.514 5.514 18 C 0.111 3.889 19 S 0.184 5.816 20 C -0.242 4.242 21 C -0.056 4.056 22 C -0.265 4.265 23 C 0.566 3.434 24 O -0.533 6.533 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.015 0.985 31 H 0.089 0.911 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.089 0.911 35 H 0.015 0.985 36 H 0.261 0.739 37 H 0.174 0.826 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -14.612 0.056 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.242 5.242 3 C -0.001 4.001 4 S 0.248 5.752 5 C -0.221 4.221 6 C 0.075 3.925 7 C -0.195 4.195 8 C -0.195 4.195 9 C -0.544 4.544 10 H 0.078 0.922 11 C -0.134 4.134 12 N -0.522 5.522 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 N -0.242 5.242 18 C -0.128 4.128 19 S 0.445 5.555 20 C -0.377 4.377 21 C -0.085 4.085 22 C -0.284 4.284 23 C 0.360 3.640 24 O -0.411 6.411 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.034 0.966 31 H 0.108 0.892 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.191 0.809 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.662 -13.320 0.057 13.423 hybrid contribution 0.603 -1.239 -0.009 1.378 sum 2.265 -14.558 0.048 14.734 Atomic orbital electron populations 1.22238 0.76014 1.05468 1.04711 1.46265 1.10079 1.05812 1.62047 1.26001 0.91160 0.92613 0.90362 1.86126 1.13030 0.89739 1.86329 1.24359 0.95660 0.96018 1.06100 1.18136 0.94739 0.86110 0.93472 1.21943 0.97285 1.02861 0.97362 1.21941 0.97281 1.02864 0.97369 1.20994 0.91949 0.90152 1.51296 0.92206 1.24872 0.95657 0.98202 0.94651 1.69802 1.17745 1.14454 1.50230 0.86496 0.82526 0.81142 0.77626 1.19713 1.20988 1.20983 1.68607 1.01731 1.26697 1.27191 1.24027 0.99842 0.91401 0.97509 1.84200 0.96706 1.00581 1.74047 1.25048 1.00612 0.98565 1.13505 1.20393 0.90502 0.98945 0.98703 1.20646 0.93592 0.93916 1.20281 1.16537 0.87123 0.82860 0.77444 1.90874 1.70348 1.28327 1.51574 0.89803 0.88378 0.88524 0.89297 0.89270 0.96646 0.89249 0.95061 0.95065 0.89243 0.96652 0.92885 0.80914 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 9.93 59.85 0.59 1.24 16 2 N -0.52 -7.75 3.01 -126.45 -0.38 -8.13 16 3 C 0.37 5.93 7.79 -88.50 -0.69 5.24 16 4 S 0.01 0.15 17.05 -107.50 -1.83 -1.68 16 5 C -0.07 -1.39 3.75 37.16 0.14 -1.25 16 6 C 0.08 1.69 0.52 -155.66 -0.08 1.61 16 7 C -0.14 -2.93 8.01 37.16 0.30 -2.64 16 8 C -0.14 -2.93 8.01 37.16 0.30 -2.63 16 9 C -0.50 -12.45 8.01 -34.45 -0.28 -12.72 16 10 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 11 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 12 N -0.88 -22.64 9.35 55.43 0.52 -22.12 16 13 Si 0.89 19.91 29.54 -169.99 -5.02 14.88 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 N -0.51 -8.73 9.12 -11.40 -0.10 -8.84 16 18 C 0.11 1.75 7.69 -15.86 -0.12 1.63 16 19 S 0.18 2.26 23.24 -107.50 -2.50 -0.23 16 20 C -0.24 -2.55 11.03 28.83 0.32 -2.23 16 21 C -0.06 -0.71 10.30 -38.76 -0.40 -1.11 16 22 C -0.26 -4.13 6.08 -105.05 -0.64 -4.77 16 23 C 0.57 9.33 7.50 -14.56 -0.11 9.22 16 24 O -0.53 -9.55 16.66 5.00 0.08 -9.47 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.10 1.05 7.42 -51.93 -0.39 0.67 16 27 H 0.10 0.97 6.55 -51.93 -0.34 0.63 16 28 H 0.09 1.72 8.11 -51.91 -0.42 1.30 16 29 H 0.09 1.73 8.11 -51.92 -0.42 1.31 16 30 H 0.01 0.29 6.91 -51.93 -0.36 -0.07 16 31 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 35 H 0.01 0.28 6.91 -51.93 -0.36 -0.07 16 36 H 0.26 6.45 8.31 -40.82 -0.34 6.12 16 37 H 0.17 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -27.86 335.80 -9.50 -37.37 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.57 Total: -0.05 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.76 Total: -6.79 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.03 Total: -39.08 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -4.33 Total: -1.91 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.86 -9.50 -37.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568902114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.741 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds