Wall clock time and date at job start Tue Mar 31 2020 13:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36494 * 119.85219 * 2 1 4 4 S 1.76199 * 119.21523 * 359.97438 * 3 2 1 5 5 C 1.80996 * 100.00083 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47325 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47052 * 300.00158 * 6 5 4 8 8 C 1.53006 * 109.46991 * 59.99839 * 6 5 4 9 9 C 1.50692 * 109.47463 * 180.02562 * 6 5 4 10 10 H 1.08004 * 119.99969 * 0.02562 * 9 6 5 11 11 C 1.37872 * 120.00459 * 179.97438 * 9 6 5 12 12 N 1.31513 * 119.99733 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00537 * 179.97438 * 11 9 6 14 14 H 1.48507 * 109.46827 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47313 * 119.99853 * 13 11 9 16 16 H 1.48498 * 109.47556 * 240.00353 * 13 11 9 17 17 N 1.31140 * 121.56914 * 179.97438 * 3 2 1 18 18 C 1.34780 * 121.59406 * 0.02573 * 17 3 2 19 19 S 1.75896 * 130.72047 * 179.97438 * 18 17 3 20 20 C 1.75331 * 92.17456 * 180.02562 * 19 18 17 21 21 C 1.31872 * 111.31332 * 359.97438 * 20 19 18 22 22 C 1.39314 * 119.67137 * 359.97438 * 18 17 3 23 23 C 1.34712 * 119.85923 * 179.73523 * 2 1 3 24 24 O 1.21908 * 120.55142 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.46907 * 90.00029 * 1 2 3 26 26 H 1.08997 * 109.46887 * 209.99557 * 1 2 3 27 27 H 1.09001 * 109.47198 * 329.99760 * 1 2 3 28 28 H 1.09004 * 109.47132 * 300.00213 * 5 4 3 29 29 H 1.09001 * 109.46916 * 60.00060 * 5 4 3 30 30 H 1.09006 * 109.47081 * 59.99810 * 7 6 5 31 31 H 1.08995 * 109.47286 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47127 * 299.99967 * 7 6 5 33 33 H 1.08996 * 109.46622 * 60.00183 * 8 6 5 34 34 H 1.08998 * 109.46762 * 179.97438 * 8 6 5 35 35 H 1.08996 * 109.47314 * 300.00305 * 8 6 5 36 36 H 0.96999 * 120.00338 * 179.97438 * 12 11 9 37 37 H 1.08004 * 124.34382 * 180.02562 * 20 19 18 38 38 H 1.07995 * 122.59546 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1444 1.1838 0.0000 4 16 1.2387 2.6952 -0.0007 5 6 2.6061 3.8811 0.0004 6 6 2.0463 5.3050 0.0006 7 6 1.1890 5.5162 -1.2490 8 6 1.1878 5.5153 1.2495 9 6 3.1848 6.2923 0.0008 10 1 4.2055 5.9395 0.0004 11 6 2.9233 7.6460 0.0005 12 7 1.6804 8.0757 0.0005 13 14 4.3345 8.8699 0.0016 14 1 5.6258 8.1365 0.0020 15 1 4.2508 9.7231 -1.2111 16 1 4.2489 9.7232 1.2139 17 7 3.4552 1.2231 0.0005 18 6 4.1954 0.0968 0.0005 19 16 5.9397 -0.1301 0.0005 20 6 5.7797 -1.8761 -0.0002 21 6 4.5126 -2.2413 0.0001 22 6 3.5626 -1.1443 0.0005 23 6 2.1357 -1.1683 0.0054 24 8 1.5337 -2.2284 0.0098 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 3.2166 3.7309 0.8908 29 1 3.2179 3.7309 -0.8892 30 1 0.3655 4.8020 -1.2496 31 1 0.7899 6.5304 -1.2487 32 1 1.8006 5.3663 -2.1388 33 1 1.7986 5.3648 2.1397 34 1 0.7895 6.5299 1.2499 35 1 0.3644 4.8012 1.2489 36 1 1.4963 9.0280 0.0007 37 1 6.6122 -2.5642 -0.0001 38 1 4.2056 -3.2767 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568902114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:42 Heat of formation + Delta-G solvation = 3.864108 kcal Electronic energy + Delta-G solvation = -22551.040244 eV Core-core repulsion = 19224.934196 eV Total energy + Delta-G solvation = -3326.106048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.69966 -38.84401 -37.98339 -37.78074 -35.21757 -33.51259 -30.80489 -29.11709 -27.94782 -27.57470 -27.13646 -26.06055 -24.98398 -22.35210 -21.16102 -20.15758 -19.37833 -18.02768 -17.93133 -17.71113 -17.62246 -16.68293 -16.43009 -15.78514 -15.43065 -15.19128 -14.87357 -14.76879 -14.58702 -14.48825 -14.12289 -13.81799 -13.73773 -13.36281 -13.15656 -13.08834 -12.67765 -12.58898 -12.22495 -12.19187 -12.12956 -11.80647 -11.45561 -11.44875 -11.34539 -11.21122 -11.11170 -10.57315 -10.38976 -9.89949 -9.52789 -8.67282 -8.00146 -6.15928 -0.97008 -0.20180 0.12658 0.39355 0.86650 0.99102 1.03411 1.44027 1.44199 1.49830 1.57721 2.26354 2.48644 3.13761 3.24276 3.38594 3.79937 4.06053 4.13454 4.28124 4.30618 4.33176 4.61201 4.62500 4.71933 4.77440 4.89878 5.02216 5.04976 5.12376 5.13757 5.19260 5.29239 5.47665 5.66559 5.70782 6.13201 6.21201 6.26913 6.43288 6.48806 6.87981 7.51961 8.98971 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.003759 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.786874 B = 7447.897983 C = 8911.309791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.518 5.518 3 C 0.361 3.639 4 S 0.051 5.949 5 C -0.072 4.072 6 C 0.070 3.930 7 C -0.127 4.127 8 C -0.127 4.127 9 C -0.519 4.519 10 H 0.050 0.950 11 C 0.029 3.971 12 N -0.900 5.900 13 Si 0.943 3.057 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 N -0.531 5.531 18 C 0.075 3.925 19 S 0.207 5.793 20 C -0.209 4.209 21 C -0.079 4.079 22 C -0.275 4.275 23 C 0.556 3.444 24 O -0.556 6.556 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.260 0.740 37 H 0.216 0.784 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 -16.153 0.021 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.239 5.239 3 C -0.014 4.014 4 S 0.288 5.712 5 C -0.220 4.220 6 C 0.068 3.932 7 C -0.185 4.185 8 C -0.185 4.185 9 C -0.559 4.559 10 H 0.068 0.932 11 C -0.171 4.171 12 N -0.539 5.539 13 Si 0.771 3.229 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 N -0.260 5.260 18 C -0.163 4.163 19 S 0.468 5.532 20 C -0.344 4.344 21 C -0.108 4.108 22 C -0.295 4.295 23 C 0.351 3.649 24 O -0.436 6.436 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.232 0.768 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.479 -14.853 0.021 15.059 hybrid contribution 0.440 -0.885 0.002 0.989 sum 2.920 -15.738 0.023 16.007 Atomic orbital electron populations 1.22507 0.74129 1.06313 1.06078 1.46322 1.11303 1.05099 1.61205 1.25928 0.91241 0.92840 0.91383 1.85732 1.10238 0.88303 1.86916 1.23953 0.96872 0.95894 1.05307 1.18109 0.94077 0.87356 0.93641 1.21794 0.97779 1.01915 0.97043 1.21793 0.97782 1.01920 0.97046 1.21284 0.92497 0.91148 1.50977 0.93186 1.25435 0.97293 0.99557 0.94779 1.69914 1.18751 1.14477 1.50780 0.85731 0.80463 0.79389 0.77364 1.19716 1.20973 1.20962 1.68535 1.02438 1.27847 1.27158 1.24407 1.01581 0.91150 0.99132 1.84152 0.94250 1.01945 1.72850 1.25553 1.01069 0.98033 1.09754 1.20568 0.90700 0.98981 1.00543 1.21017 0.93762 0.95026 1.19721 1.16787 0.87712 0.82933 0.77422 1.90849 1.70857 1.28937 1.53003 0.88190 0.87878 0.87253 0.90160 0.90145 0.94340 0.91792 0.95502 0.95494 0.91790 0.94327 0.93053 0.76754 0.82153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.06 9.93 127.77 1.27 2.33 16 2 N -0.52 -14.98 3.01 -672.14 -2.02 -17.00 16 3 C 0.36 11.21 7.79 179.61 1.40 12.60 16 4 S 0.05 1.52 17.05 -56.49 -0.96 0.56 16 5 C -0.07 -2.69 3.75 71.98 0.27 -2.42 16 6 C 0.07 3.06 0.52 -52.93 -0.03 3.04 16 7 C -0.13 -5.44 8.01 71.98 0.58 -4.86 16 8 C -0.13 -5.43 8.01 71.98 0.58 -4.86 16 9 C -0.52 -25.92 8.01 25.60 0.21 -25.71 16 10 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 11 C 0.03 1.48 5.15 84.65 0.44 1.92 16 12 N -0.90 -46.64 9.35 21.45 0.20 -46.44 16 13 Si 0.94 41.07 29.54 68.60 2.03 43.10 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 17 N -0.53 -17.83 9.12 -189.99 -1.73 -19.57 16 18 C 0.08 2.30 7.69 84.50 0.65 2.95 16 19 S 0.21 4.67 23.24 -56.49 -1.31 3.35 16 20 C -0.21 -3.70 11.03 67.00 0.74 -2.96 16 21 C -0.08 -1.83 10.30 23.22 0.24 -1.59 16 22 C -0.28 -8.32 6.08 -20.14 -0.12 -8.44 16 23 C 0.56 18.00 7.50 85.37 0.64 18.64 16 24 O -0.56 -19.64 16.66 -5.02 -0.08 -19.72 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.10 2.09 7.42 -2.39 -0.02 2.07 16 27 H 0.11 1.98 6.55 -2.39 -0.02 1.96 16 28 H 0.08 3.12 8.11 -2.39 -0.02 3.10 16 29 H 0.08 3.13 8.11 -2.39 -0.02 3.11 16 30 H 0.04 1.42 6.91 -2.38 -0.02 1.40 16 31 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 35 H 0.04 1.42 6.91 -2.39 -0.02 1.40 16 36 H 0.26 13.00 8.31 -92.71 -0.77 12.22 16 37 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -60.30 335.80 4.05 -56.25 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.09 Total: 8.83 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 6.85 Total: -9.37 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -3.55 Total: -83.00 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.08 Total: -19.72 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -2.28 Total: 3.91 kcal Total: -60.30 4.05 -56.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568902114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.117 kcal (2) G-P(sol) polarization free energy of solvation -60.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds