Wall clock time and date at job start Tue Mar 31 2020 13:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37826 * 122.79265 * 2 1 4 4 C 1.33632 * 115.19285 * 180.02562 * 3 2 1 5 5 S 1.75820 * 109.97562 * 0.02562 * 4 3 2 6 6 C 1.36165 * 122.78408 * 180.02562 * 2 1 3 7 7 C 1.47036 * 125.33649 * 359.71276 * 6 2 1 8 8 N 1.31320 * 126.32742 * 359.68759 * 7 6 2 9 9 N 1.28650 * 109.38858 * 179.86143 * 8 7 6 10 10 C 1.31213 * 109.49149 * 0.41090 * 9 8 7 11 11 S 1.76202 * 126.26038 * 179.77167 * 10 9 8 12 12 C 1.81005 * 99.99956 * 359.97438 * 11 10 9 13 13 C 1.53001 * 109.46962 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47291 * 299.99917 * 13 12 11 15 15 C 1.53000 * 109.47057 * 59.99904 * 13 12 11 16 16 C 1.50700 * 109.47171 * 179.97438 * 13 12 11 17 17 H 1.08000 * 119.99408 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00193 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99894 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99925 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47291 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47485 * 119.99963 * 20 18 16 23 23 H 1.48503 * 109.47187 * 239.99731 * 20 18 16 24 24 O 1.34757 * 107.48094 * 359.74762 * 10 9 8 25 25 H 1.09002 * 109.46950 * 269.97814 * 1 2 3 26 26 H 1.09002 * 109.46872 * 29.97648 * 1 2 3 27 27 H 1.09003 * 109.47431 * 149.97492 * 1 2 3 28 28 H 1.08002 * 122.40590 * 0.02562 * 3 2 1 29 29 H 1.08002 * 125.01398 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.46538 * 299.99879 * 12 11 10 31 31 H 1.08994 * 109.46972 * 60.00046 * 12 11 10 32 32 H 1.08999 * 109.47407 * 59.99758 * 14 13 12 33 33 H 1.08993 * 109.47238 * 180.02562 * 14 13 12 34 34 H 1.09007 * 109.47043 * 300.00579 * 14 13 12 35 35 H 1.09000 * 109.47386 * 60.00059 * 15 13 12 36 36 H 1.09007 * 109.46986 * 179.97438 * 15 13 12 37 37 H 1.09001 * 109.47538 * 299.99553 * 15 13 12 38 38 H 0.96998 * 119.99926 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2535 1.1586 0.0000 4 6 3.5781 0.9819 -0.0005 5 16 3.9549 -0.7355 -0.0018 6 6 2.2443 -1.1448 -0.0005 7 6 1.6964 -2.5092 0.0049 8 7 0.4248 -2.8368 0.0168 9 7 0.3139 -4.1186 0.0152 10 6 1.5086 -4.6613 0.0111 11 16 1.8697 -6.3859 0.0132 12 6 0.1894 -7.0589 0.0228 13 6 0.2524 -8.5876 0.0265 14 6 0.9881 -9.0708 -1.2249 15 6 0.9998 -9.0642 1.2736 16 6 -1.1466 -9.1479 0.0352 17 1 -1.9955 -8.4804 0.0381 18 6 -1.3426 -10.5126 0.0403 19 7 -0.3086 -11.3255 0.0372 20 14 -3.0766 -11.2071 0.0503 21 1 -4.0566 -10.0915 0.0518 22 1 -3.2814 -12.0448 -1.1586 23 1 -3.2704 -12.0373 1.2663 24 8 2.4087 -3.6585 0.0045 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.8004 2.1390 0.0004 29 1 4.3093 1.7767 -0.0010 30 1 -0.3345 -6.7149 0.9146 31 1 -0.3431 -6.7190 -0.8654 32 1 2.0000 -8.6656 -1.2307 33 1 1.0326 -10.1599 -1.2224 34 1 0.4557 -8.7312 -2.1133 35 1 0.4757 -8.7199 2.1651 36 1 1.0442 -10.1533 1.2765 37 1 2.0117 -8.6590 1.2678 38 1 -0.4465 -12.2856 0.0405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579734598.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:18 Heat of formation + Delta-G solvation = 67.367360 kcal Electronic energy + Delta-G solvation = -21801.532261 eV Core-core repulsion = 18478.179921 eV Total energy + Delta-G solvation = -3323.352340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.85527 -38.61899 -36.22748 -35.97149 -32.58665 -31.64402 -30.30449 -28.18089 -26.38022 -25.81177 -25.22372 -24.13960 -23.67913 -22.75968 -19.49863 -19.19165 -18.15138 -17.71459 -17.31646 -16.10499 -15.89168 -15.77026 -14.80795 -14.37757 -14.25363 -14.09849 -13.48714 -13.41278 -12.92066 -12.57370 -12.49222 -12.38617 -12.34389 -12.20874 -11.60595 -11.47901 -11.41742 -11.32677 -11.06067 -10.99768 -10.74361 -10.67006 -10.42772 -10.33013 -10.09850 -9.69808 -9.61098 -8.98795 -8.79483 -8.70912 -8.45967 -7.40658 -6.08628 -4.19789 0.03239 0.88529 1.06346 1.36737 1.52193 2.18091 2.48795 2.63985 2.76224 3.24425 3.33382 3.38055 4.25693 4.35320 4.54400 4.77624 5.01666 5.07983 5.18296 5.23208 5.25290 5.41069 5.56928 5.62095 5.75605 5.84403 5.93916 6.04909 6.27893 6.38166 6.67676 6.77527 6.87957 6.91716 7.23864 7.46113 7.63894 7.91606 8.03868 8.26074 8.27760 8.79853 9.46334 10.92818 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.030744 B = 0.002577 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.541524 B =10861.466105 C =11575.628712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.038 4.038 3 C -0.135 4.135 4 C -0.199 4.199 5 S 0.163 5.837 6 C -0.141 4.141 7 C 0.215 3.785 8 N -0.252 5.252 9 N -0.292 5.292 10 C 0.147 3.853 11 S 0.055 5.945 12 C -0.083 4.083 13 C 0.082 3.918 14 C -0.138 4.138 15 C -0.139 4.139 16 C -0.505 4.505 17 H 0.061 0.939 18 C 0.068 3.932 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 O -0.209 6.209 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.173 0.827 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.016 0.984 33 H 0.090 0.910 34 H 0.032 0.968 35 H 0.032 0.968 36 H 0.090 0.910 37 H 0.016 0.984 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 21.418 -0.106 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.055 4.055 3 C -0.165 4.165 4 C -0.336 4.336 5 S 0.429 5.571 6 C -0.259 4.259 7 C 0.002 3.998 8 N -0.102 5.102 9 N -0.144 5.144 10 C -0.168 4.168 11 S 0.288 5.712 12 C -0.231 4.231 13 C 0.079 3.921 14 C -0.197 4.197 15 C -0.197 4.197 16 C -0.545 4.545 17 H 0.079 0.921 18 C -0.134 4.134 19 N -0.522 5.522 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 O -0.091 6.091 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.168 0.832 29 H 0.191 0.809 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.035 0.965 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.109 0.891 37 H 0.035 0.965 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.670 19.863 -0.103 22.092 hybrid contribution -1.993 1.039 0.025 2.248 sum 7.677 20.902 -0.078 22.268 Atomic orbital electron populations 1.20790 0.88363 1.04174 1.03356 1.19424 0.98256 0.89774 0.98033 1.19920 0.92664 0.99260 1.04683 1.25923 1.00053 0.99402 1.08257 1.84455 1.01986 0.99593 1.71067 1.21076 0.97510 0.89049 1.18301 1.23882 0.86413 0.85961 1.03530 1.74533 1.14271 1.05638 1.15710 1.74976 1.19491 0.99673 1.20281 1.30863 0.85551 0.99056 1.01303 1.86327 1.17101 0.79039 1.88738 1.24445 0.90072 1.02510 1.06067 1.18111 0.96827 0.83531 0.93608 1.21963 0.95459 1.04888 0.97345 1.21966 0.95432 1.04895 0.97371 1.21002 0.90509 0.91562 1.51391 0.92117 1.24880 0.97068 0.96850 0.94618 1.69809 1.29034 1.03211 1.50172 0.86467 0.84465 0.79080 0.77620 1.19684 1.20959 1.20966 1.85051 1.38386 1.14190 1.71515 0.90368 0.91208 0.88937 0.83161 0.80945 0.89298 0.89293 0.96532 0.89114 0.94924 0.94926 0.89107 0.96535 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.60 36.01 0.35 -0.74 16 2 C -0.04 -0.41 5.88 -105.52 -0.62 -1.03 16 3 C -0.14 -1.06 9.95 -41.35 -0.41 -1.47 16 4 C -0.20 -1.44 11.21 29.12 0.33 -1.11 16 5 S 0.16 1.61 23.31 -107.50 -2.51 -0.90 16 6 C -0.14 -1.80 6.45 -36.76 -0.24 -2.04 16 7 C 0.22 3.48 8.14 -14.21 -0.12 3.37 16 8 N -0.25 -4.48 9.76 31.97 0.31 -4.17 16 9 N -0.29 -5.66 11.61 30.33 0.35 -5.30 16 10 C 0.15 2.71 8.53 52.50 0.45 3.16 16 11 S 0.06 1.00 19.36 -107.50 -2.08 -1.09 16 12 C -0.08 -1.68 4.16 37.16 0.15 -1.53 16 13 C 0.08 1.87 0.52 -155.66 -0.08 1.79 16 14 C -0.14 -3.11 8.01 37.16 0.30 -2.82 16 15 C -0.14 -3.12 8.01 37.16 0.30 -2.82 16 16 C -0.50 -12.88 8.01 -34.44 -0.28 -13.16 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 19 N -0.88 -23.17 9.35 55.43 0.52 -22.65 16 20 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 O -0.21 -3.62 10.93 1.87 0.02 -3.60 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.09 1.15 6.04 -51.93 -0.31 0.84 16 28 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 30 H 0.09 1.83 8.14 -51.92 -0.42 1.40 16 31 H 0.09 1.83 8.14 -51.92 -0.42 1.40 16 32 H 0.02 0.33 6.91 -51.93 -0.36 -0.03 16 33 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 37 H 0.02 0.33 6.91 -51.93 -0.36 -0.03 16 38 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -27.56 341.81 -7.80 -35.36 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.58 Total: -1.39 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 0.04 Total: -16.75 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 1.18 Total: -32.13 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: 0.02 Total: -3.60 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -4.59 Total: -1.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.56 -7.80 -35.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579734598.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.725 kcal (2) G-P(sol) polarization free energy of solvation -27.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds