Wall clock time and date at job start Tue Mar 31 2020 13:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37826 * 122.79265 * 2 1 4 4 C 1.33632 * 115.19285 * 180.02562 * 3 2 1 5 5 S 1.75820 * 109.97562 * 0.02562 * 4 3 2 6 6 C 1.36165 * 122.78408 * 180.02562 * 2 1 3 7 7 C 1.47036 * 125.33649 * 359.71276 * 6 2 1 8 8 N 1.31320 * 126.32742 * 359.68759 * 7 6 2 9 9 N 1.28650 * 109.38858 * 179.86143 * 8 7 6 10 10 C 1.31213 * 109.49149 * 0.41090 * 9 8 7 11 11 S 1.76202 * 126.26038 * 179.77167 * 10 9 8 12 12 C 1.81005 * 99.99956 * 359.97438 * 11 10 9 13 13 C 1.53001 * 109.46962 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47291 * 299.99917 * 13 12 11 15 15 C 1.53000 * 109.47057 * 59.99904 * 13 12 11 16 16 C 1.50700 * 109.47171 * 179.97438 * 13 12 11 17 17 H 1.08000 * 119.99408 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00193 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99894 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99925 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47291 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47485 * 119.99963 * 20 18 16 23 23 H 1.48503 * 109.47187 * 239.99731 * 20 18 16 24 24 O 1.34757 * 107.48094 * 359.74762 * 10 9 8 25 25 H 1.09002 * 109.46950 * 269.97814 * 1 2 3 26 26 H 1.09002 * 109.46872 * 29.97648 * 1 2 3 27 27 H 1.09003 * 109.47431 * 149.97492 * 1 2 3 28 28 H 1.08002 * 122.40590 * 0.02562 * 3 2 1 29 29 H 1.08002 * 125.01398 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.46538 * 299.99879 * 12 11 10 31 31 H 1.08994 * 109.46972 * 60.00046 * 12 11 10 32 32 H 1.08999 * 109.47407 * 59.99758 * 14 13 12 33 33 H 1.08993 * 109.47238 * 180.02562 * 14 13 12 34 34 H 1.09007 * 109.47043 * 300.00579 * 14 13 12 35 35 H 1.09000 * 109.47386 * 60.00059 * 15 13 12 36 36 H 1.09007 * 109.46986 * 179.97438 * 15 13 12 37 37 H 1.09001 * 109.47538 * 299.99553 * 15 13 12 38 38 H 0.96998 * 119.99926 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2535 1.1586 0.0000 4 6 3.5781 0.9819 -0.0005 5 16 3.9549 -0.7355 -0.0018 6 6 2.2443 -1.1448 -0.0005 7 6 1.6964 -2.5092 0.0049 8 7 0.4248 -2.8368 0.0168 9 7 0.3139 -4.1186 0.0152 10 6 1.5086 -4.6613 0.0111 11 16 1.8697 -6.3859 0.0132 12 6 0.1894 -7.0589 0.0228 13 6 0.2524 -8.5876 0.0265 14 6 0.9881 -9.0708 -1.2249 15 6 0.9998 -9.0642 1.2736 16 6 -1.1466 -9.1479 0.0352 17 1 -1.9955 -8.4804 0.0381 18 6 -1.3426 -10.5126 0.0403 19 7 -0.3086 -11.3255 0.0372 20 14 -3.0766 -11.2071 0.0503 21 1 -4.0566 -10.0915 0.0518 22 1 -3.2814 -12.0448 -1.1586 23 1 -3.2704 -12.0373 1.2663 24 8 2.4087 -3.6585 0.0045 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.8004 2.1390 0.0004 29 1 4.3093 1.7767 -0.0010 30 1 -0.3345 -6.7149 0.9146 31 1 -0.3431 -6.7190 -0.8654 32 1 2.0000 -8.6656 -1.2307 33 1 1.0326 -10.1599 -1.2224 34 1 0.4557 -8.7312 -2.1133 35 1 0.4757 -8.7199 2.1651 36 1 1.0442 -10.1533 1.2765 37 1 2.0117 -8.6590 1.2678 38 1 -0.4465 -12.2856 0.0405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579734598.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:17 Heat of formation + Delta-G solvation = 50.761608 kcal Electronic energy + Delta-G solvation = -21802.252341 eV Core-core repulsion = 18478.179921 eV Total energy + Delta-G solvation = -3324.072420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.18363 -39.37920 -37.99719 -37.37282 -33.66105 -33.55009 -31.23558 -29.22665 -27.99329 -27.63803 -27.18917 -25.33701 -24.83836 -23.65179 -21.09149 -20.40559 -19.11436 -18.90897 -18.65981 -17.98934 -17.16170 -16.71401 -16.56884 -15.80387 -15.22973 -15.11745 -15.00669 -14.69886 -14.18730 -14.13496 -13.74305 -13.44853 -13.36966 -13.26952 -13.23788 -13.09748 -12.76868 -12.74486 -12.60244 -12.35714 -12.30065 -12.11506 -11.91734 -11.88065 -11.72953 -11.50457 -11.42604 -10.64117 -10.42431 -9.90595 -9.47537 -8.78896 -8.04154 -6.20730 -0.91382 -0.53151 0.22074 0.27726 0.82783 0.97487 1.11756 1.42507 1.46613 1.49418 1.56589 1.67987 2.45870 3.10616 3.19947 3.66255 3.78205 3.91252 4.10290 4.15561 4.20401 4.28947 4.37966 4.64754 4.66120 4.77906 4.90710 4.94484 4.97615 5.07026 5.09418 5.13097 5.31851 5.40446 5.47635 5.60069 5.66346 6.06176 6.14421 6.37208 6.82459 6.92732 7.47211 8.95463 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.030744 B = 0.002577 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.541524 B =10861.466105 C =11575.628712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.020 4.020 3 C -0.145 4.145 4 C -0.161 4.161 5 S 0.154 5.846 6 C -0.199 4.199 7 C 0.235 3.765 8 N -0.281 5.281 9 N -0.313 5.313 10 C 0.131 3.869 11 S 0.086 5.914 12 C -0.078 4.078 13 C 0.076 3.924 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.523 4.523 17 H 0.051 0.949 18 C 0.029 3.971 19 N -0.900 5.900 20 Si 0.948 3.052 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.282 1.282 24 O -0.213 6.213 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.187 0.813 29 H 0.214 0.786 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.578 24.594 -0.108 26.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.038 4.038 3 C -0.174 4.174 4 C -0.298 4.298 5 S 0.420 5.580 6 C -0.318 4.318 7 C 0.023 3.977 8 N -0.129 5.129 9 N -0.165 5.165 10 C -0.185 4.185 11 S 0.317 5.683 12 C -0.227 4.227 13 C 0.073 3.927 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.563 4.563 17 H 0.069 0.931 18 C -0.171 4.171 19 N -0.539 5.539 20 Si 0.775 3.225 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.207 1.207 24 O -0.096 6.096 25 H 0.099 0.901 26 H 0.118 0.882 27 H 0.083 0.917 28 H 0.204 0.796 29 H 0.231 0.769 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.762 23.051 -0.105 25.440 hybrid contribution -2.240 0.366 0.023 2.270 sum 8.522 23.418 -0.081 24.920 Atomic orbital electron populations 1.20833 0.88334 1.04292 1.03507 1.19828 0.98621 0.90201 0.95137 1.20228 0.92716 0.99581 1.04894 1.26480 1.00674 0.98401 1.04240 1.84500 1.00196 1.02100 1.71222 1.21307 0.99551 0.87842 1.23067 1.24599 0.85990 0.86854 1.00306 1.74513 1.15219 1.04827 1.18291 1.74893 1.20283 1.00763 1.20528 1.30741 0.85691 0.99301 1.02761 1.85967 1.14119 0.78839 1.89326 1.24081 0.92087 1.01137 1.05387 1.18079 0.95698 0.85095 0.93822 1.21829 0.96580 1.03333 0.97082 1.21831 0.96551 1.03338 0.97109 1.21262 0.91678 0.91840 1.51473 0.93120 1.25470 0.99876 0.97196 0.94567 1.69915 1.30216 1.03261 1.50488 0.85655 0.81084 0.78254 0.77516 1.19820 1.20733 1.20745 1.85040 1.38344 1.14430 1.71783 0.90101 0.88192 0.91676 0.79615 0.76895 0.90043 0.90031 0.94534 0.91358 0.95213 0.95221 0.91352 0.94538 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 9.60 71.24 0.68 -1.37 16 2 C -0.02 -0.38 5.88 -20.44 -0.12 -0.50 16 3 C -0.15 -1.65 9.95 21.13 0.21 -1.44 16 4 C -0.16 -1.57 11.21 66.77 0.75 -0.82 16 5 S 0.15 2.71 23.31 -56.49 -1.32 1.39 16 6 C -0.20 -4.91 6.45 24.10 0.16 -4.76 16 7 C 0.23 7.68 8.14 87.08 0.71 8.39 16 8 N -0.28 -10.25 9.76 -166.37 -1.62 -11.87 16 9 N -0.31 -12.49 11.61 -171.86 -2.00 -14.48 16 10 C 0.13 4.91 8.53 130.34 1.11 6.02 16 11 S 0.09 3.08 19.36 -56.49 -1.09 1.98 16 12 C -0.08 -3.24 4.16 71.98 0.30 -2.94 16 13 C 0.08 3.50 0.52 -52.93 -0.03 3.47 16 14 C -0.13 -5.90 8.01 71.98 0.58 -5.32 16 15 C -0.13 -5.90 8.01 71.98 0.58 -5.33 16 16 C -0.52 -27.20 8.01 25.60 0.21 -26.99 16 17 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 18 C 0.03 1.51 5.15 84.65 0.44 1.95 16 19 N -0.90 -47.85 9.35 21.45 0.20 -47.64 16 20 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 O -0.21 -7.46 10.93 -16.23 -0.18 -7.64 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.10 1.21 8.13 -2.39 -0.02 1.19 16 27 H 0.06 1.62 6.04 -2.39 -0.01 1.61 16 28 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 29 H 0.21 0.37 8.06 -2.91 -0.02 0.35 16 30 H 0.08 3.45 8.14 -2.40 -0.02 3.43 16 31 H 0.08 3.45 8.14 -2.40 -0.02 3.43 16 32 H 0.04 1.46 6.91 -2.39 -0.02 1.45 16 33 H 0.07 3.42 6.07 -2.39 -0.01 3.41 16 34 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 3.42 6.07 -2.38 -0.01 3.41 16 37 H 0.04 1.46 6.91 -2.39 -0.02 1.45 16 38 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 Total: -1.00 -61.31 341.81 2.67 -58.64 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.09 Total: 5.03 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 5.56 Total: -29.66 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -3.42 Total: -74.00 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.18 Total: -7.64 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -2.41 Total: 3.37 kcal Total: -61.31 2.67 -58.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579734598.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.398 kcal (2) G-P(sol) polarization free energy of solvation -61.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds