Wall clock time and date at job start Tue Mar 31 2020 13:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31594 * 122.23140 * 2 1 4 4 C 1.29946 * 117.14264 * 180.02562 * 3 2 1 5 5 N 1.38885 * 125.36921 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00139 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00166 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.52997 * 119.29569 * 250.51295 * 8 6 5 10 10 C 1.53000 * 60.38118 * 248.69765 * 9 8 6 11 11 H 1.08995 * 119.74822 * 111.12148 * 10 9 8 12 12 C 1.54265 * 118.19924 * 266.38682 * 10 9 8 13 13 C 1.54887 * 104.19575 * 87.79048 * 12 10 9 14 14 C 1.54259 * 117.41401 * 46.17388 * 8 6 5 15 15 S 1.76140 * 109.26525 * 0.26375 * 4 3 2 16 16 C 1.34653 * 122.23363 * 180.02562 * 2 1 3 17 17 S 1.76204 * 125.92733 * 359.97264 * 16 2 1 18 18 C 1.76203 * 99.99692 * 180.02562 * 17 16 2 19 19 H 1.08000 * 120.00498 * 0.02562 * 18 17 16 20 20 C 1.38428 * 119.99684 * 180.02562 * 18 17 16 21 21 N 1.31810 * 120.00269 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00040 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47020 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47127 * 120.00135 * 22 20 18 25 25 H 1.48495 * 109.47219 * 240.00114 * 22 20 18 26 26 H 1.09003 * 109.47385 * 89.97162 * 1 2 3 27 27 H 1.08999 * 109.47216 * 209.97294 * 1 2 3 28 28 H 1.09004 * 109.47250 * 329.97398 * 1 2 3 29 29 H 0.96999 * 119.99813 * 359.97438 * 5 4 3 30 30 H 1.09001 * 117.46501 * 356.30338 * 9 8 6 31 31 H 1.09003 * 117.45535 * 141.09503 * 9 8 6 32 32 H 1.08995 * 110.48485 * 206.47083 * 12 10 9 33 33 H 1.08999 * 110.48264 * 329.10836 * 12 10 9 34 34 H 1.09001 * 110.75801 * 80.37179 * 13 12 10 35 35 H 1.09005 * 110.75554 * 203.56171 * 13 12 10 36 36 H 1.08997 * 110.48864 * 235.04619 * 14 8 6 37 37 H 1.09002 * 110.48571 * 357.69316 * 14 8 6 38 38 H 0.97003 * 120.00338 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 -0.0005 5 7 4.4043 2.0546 -0.0001 6 6 5.7297 1.8100 -0.0012 7 8 6.1354 0.6671 -0.0022 8 6 6.7075 2.9568 -0.0014 9 6 7.5310 3.2383 -1.2597 10 6 8.2268 2.7127 -0.0025 11 1 8.6387 1.7036 0.0058 12 6 8.8386 3.7377 0.9746 13 6 7.6716 4.0976 1.9273 14 6 6.4476 4.1120 0.9874 15 16 3.9345 -0.7098 -0.0087 16 6 2.2251 -1.1390 -0.0005 17 16 1.5696 -2.7746 -0.0006 18 6 3.0666 -3.7040 -0.0006 19 1 4.0188 -3.1944 -0.0001 20 6 3.0222 -5.0876 -0.0011 21 7 1.8601 -5.7097 -0.0022 22 14 4.6091 -6.0731 -0.0004 23 1 5.7682 -5.1448 0.0014 24 1 4.6595 -6.9294 1.2118 25 1 4.6612 -6.9284 -1.2132 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3634 0.8898 0.5142 29 1 4.0798 2.9687 0.0003 30 1 7.4198 2.5502 -2.0977 31 1 7.6983 4.2815 -1.5279 32 1 9.6615 3.2898 1.5315 33 1 9.1782 4.6224 0.4361 34 1 7.5494 3.3330 2.6945 35 1 7.8309 5.0759 2.3809 36 1 6.4021 5.0639 0.4584 37 1 5.5258 3.9386 1.5427 38 1 1.8290 -6.6793 -0.0030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580300599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:57 Heat of formation + Delta-G solvation = 20.047249 kcal Electronic energy + Delta-G solvation = -22044.117320 eV Core-core repulsion = 18718.713026 eV Total energy + Delta-G solvation = -3325.404294 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88617 -38.97181 -38.12955 -34.74180 -32.81114 -32.02671 -30.61771 -28.79576 -27.08611 -25.76220 -24.80911 -22.94593 -21.97482 -20.74406 -20.38752 -19.01378 -18.00442 -17.50039 -16.88276 -15.92613 -15.64564 -15.44407 -15.09701 -14.92441 -14.13038 -13.91287 -13.74612 -13.51117 -13.34875 -13.18230 -12.67363 -12.23846 -12.02793 -11.87451 -11.52049 -11.41248 -11.36000 -11.31052 -11.27273 -11.05283 -10.81289 -10.56613 -10.53865 -10.23693 -10.05920 -9.75539 -9.52592 -9.05081 -8.73408 -8.63808 -7.78688 -6.59211 -6.48694 -4.26691 1.39341 1.90197 2.38682 2.55300 2.86405 3.09035 3.09658 3.18904 3.27730 3.37813 3.65221 3.98896 4.06814 4.27300 4.41834 4.57958 4.83428 4.87910 4.99667 5.04977 5.09016 5.21598 5.25117 5.30579 5.40485 5.50436 5.56891 5.70649 5.75369 5.88470 5.99241 6.05185 6.16962 6.24367 6.47102 6.51421 6.99128 7.22066 7.34527 8.02575 8.05782 8.53528 8.89625 10.46666 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.003714 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.386802 B = 7537.300731 C = 9048.054658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.476 5.476 4 C 0.188 3.812 5 N -0.610 5.610 6 C 0.549 3.451 7 O -0.505 6.505 8 C -0.176 4.176 9 C -0.118 4.118 10 C -0.124 4.124 11 H 0.123 0.877 12 C -0.097 4.097 13 C -0.124 4.124 14 C -0.087 4.087 15 S 0.199 5.801 16 C -0.251 4.251 17 S 0.147 5.853 18 C -0.555 4.555 19 H 0.089 0.911 20 C 0.082 3.918 21 N -0.863 5.863 22 Si 0.924 3.076 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.414 0.586 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.322 18.900 0.625 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 N -0.197 5.197 4 C -0.182 4.182 5 N -0.259 5.259 6 C 0.334 3.666 7 O -0.379 6.379 8 C -0.179 4.179 9 C -0.156 4.156 10 C -0.142 4.142 11 H 0.141 0.859 12 C -0.134 4.134 13 C -0.161 4.161 14 C -0.124 4.124 15 S 0.443 5.557 16 C -0.488 4.488 17 S 0.398 5.602 18 C -0.704 4.704 19 H 0.107 0.893 20 C -0.129 4.129 21 N -0.496 5.496 22 Si 0.748 3.252 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.252 0.748 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.091 17.266 0.636 19.523 hybrid contribution 1.001 0.288 -0.008 1.041 sum 10.092 17.554 0.628 20.258 Atomic orbital electron populations 1.20114 0.88046 1.02104 1.01783 1.19037 0.96700 0.84592 1.11993 1.65814 1.02811 1.32383 1.18701 1.23791 0.89877 0.92910 1.11665 1.42314 1.04259 1.08031 1.71265 1.19522 0.81273 0.89639 0.76166 1.90698 1.77153 1.22115 1.47915 1.22194 0.93927 0.97854 1.03962 1.23158 0.98739 1.02842 0.90817 1.23444 0.90772 1.01526 0.98495 0.85914 1.22011 0.97796 0.97663 0.95941 1.22593 0.93691 1.01915 0.97917 1.21849 0.99237 0.95904 0.95434 1.85856 1.01794 0.95495 1.72592 1.28763 1.01263 1.06718 1.12039 1.83063 1.11048 0.84422 1.81682 1.23306 0.93605 0.94041 1.59462 0.89298 1.25024 0.98255 0.96668 0.92945 1.70022 1.24355 1.10233 1.45030 0.85995 0.81377 0.79455 0.78330 1.18796 1.19991 1.19987 0.91880 0.91043 0.91943 0.74813 0.87605 0.87709 0.90677 0.90931 0.91050 0.90746 0.90414 0.90631 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.00 0.36 -0.72 16 2 C 0.02 0.41 6.73 -83.97 -0.57 -0.15 16 3 N -0.48 -9.72 10.55 -9.79 -0.10 -9.83 16 4 C 0.19 3.72 8.40 -87.20 -0.73 2.98 16 5 N -0.61 -9.32 5.23 -11.78 -0.06 -9.38 16 6 C 0.55 8.25 7.36 -10.98 -0.08 8.17 16 7 O -0.50 -9.60 14.31 5.56 0.08 -9.52 16 8 C -0.18 -1.84 2.67 -154.54 -0.41 -2.25 16 9 C -0.12 -1.02 9.87 -26.73 -0.26 -1.28 16 10 C -0.12 -1.17 6.55 -89.50 -0.59 -1.76 16 11 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 12 C -0.10 -0.69 6.63 -25.07 -0.17 -0.85 16 13 C -0.12 -0.90 6.88 -25.04 -0.17 -1.07 16 14 C -0.09 -0.68 6.18 -25.37 -0.16 -0.84 16 15 S 0.20 4.49 18.35 -107.50 -1.97 2.52 16 16 C -0.25 -5.90 6.67 29.46 0.20 -5.70 16 17 S 0.15 3.75 20.74 -107.50 -2.23 1.52 16 18 C -0.56 -15.32 9.26 30.80 0.29 -15.04 16 19 H 0.09 2.45 5.97 -52.49 -0.31 2.14 16 20 C 0.08 2.21 5.49 -17.49 -0.10 2.12 16 21 N -0.86 -23.97 13.22 55.47 0.73 -23.24 16 22 Si 0.92 20.90 29.55 -169.99 -5.02 15.87 16 23 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.27 7.37 -51.93 -0.38 0.88 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.41 4.95 8.40 -40.82 -0.34 4.61 16 30 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 38 H 0.28 7.09 8.32 -40.82 -0.34 6.75 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -31.75 345.15 -10.57 -42.32 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.80 Total: 0.93 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.39 Total: -16.39 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.57 Total: -42.45 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 8.24 SS G_CDS: -4.20 Total: 4.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.75 -10.57 -42.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580300599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.365 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds