Wall clock time and date at job start Tue Mar 31 2020 13:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31594 * 122.23140 * 2 1 4 4 C 1.29946 * 117.14264 * 180.02562 * 3 2 1 5 5 N 1.38885 * 125.36921 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00139 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00166 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.52997 * 119.29569 * 250.51295 * 8 6 5 10 10 C 1.53000 * 60.38118 * 248.69765 * 9 8 6 11 11 H 1.08995 * 119.74822 * 111.12148 * 10 9 8 12 12 C 1.54265 * 118.19924 * 266.38682 * 10 9 8 13 13 C 1.54887 * 104.19575 * 87.79048 * 12 10 9 14 14 C 1.54259 * 117.41401 * 46.17388 * 8 6 5 15 15 S 1.76140 * 109.26525 * 0.26375 * 4 3 2 16 16 C 1.34653 * 122.23363 * 180.02562 * 2 1 3 17 17 S 1.76204 * 125.92733 * 359.97264 * 16 2 1 18 18 C 1.76203 * 99.99692 * 180.02562 * 17 16 2 19 19 H 1.08000 * 120.00498 * 0.02562 * 18 17 16 20 20 C 1.38428 * 119.99684 * 180.02562 * 18 17 16 21 21 N 1.31810 * 120.00269 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00040 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47020 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47127 * 120.00135 * 22 20 18 25 25 H 1.48495 * 109.47219 * 240.00114 * 22 20 18 26 26 H 1.09003 * 109.47385 * 89.97162 * 1 2 3 27 27 H 1.08999 * 109.47216 * 209.97294 * 1 2 3 28 28 H 1.09004 * 109.47250 * 329.97398 * 1 2 3 29 29 H 0.96999 * 119.99813 * 359.97438 * 5 4 3 30 30 H 1.09001 * 117.46501 * 356.30338 * 9 8 6 31 31 H 1.09003 * 117.45535 * 141.09503 * 9 8 6 32 32 H 1.08995 * 110.48485 * 206.47083 * 12 10 9 33 33 H 1.08999 * 110.48264 * 329.10836 * 12 10 9 34 34 H 1.09001 * 110.75801 * 80.37179 * 13 12 10 35 35 H 1.09005 * 110.75554 * 203.56171 * 13 12 10 36 36 H 1.08997 * 110.48864 * 235.04619 * 14 8 6 37 37 H 1.09002 * 110.48571 * 357.69316 * 14 8 6 38 38 H 0.97003 * 120.00338 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 -0.0005 5 7 4.4043 2.0546 -0.0001 6 6 5.7297 1.8100 -0.0012 7 8 6.1354 0.6671 -0.0022 8 6 6.7075 2.9568 -0.0014 9 6 7.5310 3.2383 -1.2597 10 6 8.2268 2.7127 -0.0025 11 1 8.6387 1.7036 0.0058 12 6 8.8386 3.7377 0.9746 13 6 7.6716 4.0976 1.9273 14 6 6.4476 4.1120 0.9874 15 16 3.9345 -0.7098 -0.0087 16 6 2.2251 -1.1390 -0.0005 17 16 1.5696 -2.7746 -0.0006 18 6 3.0666 -3.7040 -0.0006 19 1 4.0188 -3.1944 -0.0001 20 6 3.0222 -5.0876 -0.0011 21 7 1.8601 -5.7097 -0.0022 22 14 4.6091 -6.0731 -0.0004 23 1 5.7682 -5.1448 0.0014 24 1 4.6595 -6.9294 1.2118 25 1 4.6612 -6.9284 -1.2132 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3634 0.8898 0.5142 29 1 4.0798 2.9687 0.0003 30 1 7.4198 2.5502 -2.0977 31 1 7.6983 4.2815 -1.5279 32 1 9.6615 3.2898 1.5315 33 1 9.1782 4.6224 0.4361 34 1 7.5494 3.3330 2.6945 35 1 7.8309 5.0759 2.3809 36 1 6.4021 5.0639 0.4584 37 1 5.5258 3.9386 1.5427 38 1 1.8290 -6.6793 -0.0030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580300599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:57 Heat of formation + Delta-G solvation = 1.309108 kcal Electronic energy + Delta-G solvation = -22044.929867 eV Core-core repulsion = 18718.713026 eV Total energy + Delta-G solvation = -3326.216841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.96768 -40.43561 -39.36934 -36.20211 -34.83819 -32.68207 -32.14366 -29.55530 -28.79439 -27.74076 -26.06238 -23.89329 -23.11071 -22.03754 -21.29639 -20.49605 -19.46525 -19.11234 -18.11184 -17.46607 -17.09969 -16.85678 -16.80367 -15.92256 -15.69752 -15.32317 -14.96793 -14.62562 -14.42751 -14.19349 -13.96278 -13.58106 -13.42747 -13.29906 -13.09007 -12.99767 -12.90154 -12.36003 -12.17295 -12.08535 -12.05519 -12.03443 -11.86189 -11.45194 -11.36880 -11.11742 -10.80319 -10.74122 -10.51255 -10.49436 -9.56527 -8.59893 -8.39197 -6.32170 -0.27822 0.17895 0.79833 1.09625 1.24672 1.30808 1.38169 1.47965 1.62824 1.96013 2.12334 2.51113 2.79204 3.07158 3.34997 3.46974 3.52611 3.74254 3.85275 4.21724 4.37830 4.41208 4.45040 4.63810 4.66678 4.68155 4.78737 4.83598 4.93346 4.95267 4.98513 5.03512 5.15130 5.20081 5.25778 5.27765 5.44582 5.46280 5.91478 6.00294 6.73999 6.83099 6.85064 8.48205 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.003714 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.386802 B = 7537.300731 C = 9048.054658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.481 5.481 4 C 0.225 3.775 5 N -0.598 5.598 6 C 0.545 3.455 7 O -0.545 6.545 8 C -0.187 4.187 9 C -0.099 4.099 10 C -0.132 4.132 11 H 0.097 0.903 12 C -0.090 4.090 13 C -0.124 4.124 14 C -0.082 4.082 15 S 0.152 5.848 16 C -0.280 4.280 17 S 0.102 5.898 18 C -0.577 4.577 19 H 0.079 0.921 20 C 0.036 3.964 21 N -0.895 5.895 22 Si 0.985 3.015 23 H -0.271 1.271 24 H -0.262 1.262 25 H -0.262 1.262 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.435 0.565 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.628 22.400 0.518 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.203 5.203 4 C -0.147 4.147 5 N -0.249 5.249 6 C 0.334 3.666 7 O -0.422 6.422 8 C -0.190 4.190 9 C -0.137 4.137 10 C -0.150 4.150 11 H 0.115 0.885 12 C -0.127 4.127 13 C -0.161 4.161 14 C -0.119 4.119 15 S 0.396 5.604 16 C -0.516 4.516 17 S 0.350 5.650 18 C -0.725 4.725 19 H 0.097 0.903 20 C -0.171 4.171 21 N -0.529 5.529 22 Si 0.807 3.193 23 H -0.195 1.195 24 H -0.187 1.187 25 H -0.186 1.186 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.276 0.724 30 H 0.111 0.889 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.403 20.832 0.531 23.291 hybrid contribution 0.698 -0.490 0.017 0.853 sum 11.101 20.342 0.548 23.181 Atomic orbital electron populations 1.20250 0.85490 1.03202 1.03162 1.19736 0.98493 0.84107 1.08122 1.66032 1.02565 1.31378 1.20313 1.24134 0.90247 0.92946 1.07401 1.42508 1.03895 1.07876 1.70659 1.20592 0.81407 0.90495 0.74132 1.90692 1.77627 1.24474 1.49371 1.22310 0.93000 0.97224 1.06446 1.23303 0.96253 1.04545 0.89549 1.23579 0.90031 1.01442 0.99987 0.88457 1.22036 0.97592 0.97705 0.95361 1.22617 0.93439 1.02644 0.97416 1.21926 0.99221 0.95860 0.94884 1.86074 1.02533 0.98283 1.73479 1.28590 1.01460 1.06126 1.15389 1.82848 1.11116 0.86072 1.84950 1.23479 0.93858 0.94894 1.60291 0.90322 1.25872 1.01401 0.97377 0.92451 1.70092 1.26049 1.10745 1.46054 0.85091 0.77114 0.77961 0.79168 1.19517 1.18673 1.18639 0.90238 0.91308 0.89412 0.72377 0.88868 0.84064 0.90593 0.88402 0.93023 0.88268 0.87342 0.91153 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.11 10.02 71.23 0.71 -1.40 16 2 C 0.04 1.56 6.73 41.77 0.28 1.84 16 3 N -0.48 -18.98 10.55 -184.88 -1.95 -20.93 16 4 C 0.23 8.72 8.40 179.15 1.50 10.22 16 5 N -0.60 -17.29 5.23 -309.58 -1.62 -18.91 16 6 C 0.55 15.92 7.36 87.66 0.65 16.56 16 7 O -0.55 -21.11 14.31 -3.03 -0.04 -21.15 16 8 C -0.19 -3.45 2.67 -52.20 -0.14 -3.59 16 9 C -0.10 -1.41 9.87 30.59 0.30 -1.11 16 10 C -0.13 -2.26 6.55 -10.07 -0.07 -2.32 16 11 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 12 C -0.09 -0.98 6.63 31.67 0.21 -0.77 16 13 C -0.12 -1.39 6.88 31.69 0.22 -1.17 16 14 C -0.08 -0.98 6.18 31.48 0.19 -0.79 16 15 S 0.15 7.06 18.35 -56.49 -1.04 6.02 16 16 C -0.28 -13.51 6.67 67.00 0.45 -13.06 16 17 S 0.10 5.45 20.74 -56.49 -1.17 4.28 16 18 C -0.58 -33.26 9.26 67.87 0.63 -32.63 16 19 H 0.08 4.57 5.97 -2.91 -0.02 4.55 16 20 C 0.04 2.02 5.49 84.74 0.47 2.48 16 21 N -0.89 -51.16 13.22 21.59 0.29 -50.88 16 22 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.07 2.42 7.37 -2.39 -0.02 2.40 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.43 9.15 8.40 -92.71 -0.78 8.37 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 38 H 0.28 14.80 8.32 -92.71 -0.77 14.03 16 Total: -1.00 -72.24 345.15 2.22 -70.02 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.32 Total: 11.37 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 5.40 Total: -25.73 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -3.29 Total: -90.71 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.04 Total: -21.15 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 12.51 SS G_CDS: -2.21 Total: 10.30 kcal Total: -72.24 2.22 -70.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580300599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.327 kcal (2) G-P(sol) polarization free energy of solvation -72.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds