Wall clock time and date at job start Tue Mar 31 2020 13:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31592 * 122.22573 * 2 1 4 4 C 1.29943 * 117.13654 * 179.97438 * 3 2 1 5 5 N 1.38894 * 125.36649 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99950 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99579 * 179.97438 * 6 5 4 9 9 C 1.53008 * 119.29480 * 109.76494 * 8 6 5 10 10 C 1.53003 * 60.37468 * 111.30497 * 9 8 6 11 11 H 1.09010 * 119.29573 * 248.69249 * 10 9 8 12 12 C 1.54263 * 118.19868 * 93.61802 * 10 9 8 13 13 C 1.54890 * 104.19422 * 272.20716 * 12 10 9 14 14 C 1.54260 * 117.41417 * 315.42542 * 8 6 5 15 15 S 1.76148 * 109.27152 * 359.75551 * 4 3 2 16 16 C 1.34652 * 122.23262 * 179.97438 * 2 1 3 17 17 S 1.76200 * 125.93335 * 359.97438 * 16 2 1 18 18 C 1.76191 * 100.00185 * 180.02562 * 17 16 2 19 19 H 1.08003 * 120.00317 * 359.97438 * 18 17 16 20 20 C 1.38430 * 120.00040 * 180.02562 * 18 17 16 21 21 N 1.31814 * 119.99876 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00205 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99741 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99921 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 H 1.09000 * 109.47358 * 270.02492 * 1 2 3 27 27 H 1.08999 * 109.47623 * 30.03155 * 1 2 3 28 28 H 1.09010 * 109.46652 * 150.02629 * 1 2 3 29 29 H 0.97004 * 119.99976 * 359.97438 * 5 4 3 30 30 H 1.08998 * 117.45925 * 218.90401 * 9 8 6 31 31 H 1.08996 * 117.46263 * 3.71084 * 9 8 6 32 32 H 1.08997 * 110.49012 * 30.88753 * 12 10 9 33 33 H 1.09001 * 110.48789 * 153.40045 * 12 10 9 34 34 H 1.08997 * 110.75570 * 156.25667 * 13 12 10 35 35 H 1.09003 * 110.75722 * 279.63012 * 13 12 10 36 36 H 1.09001 * 110.48653 * 2.30321 * 14 8 6 37 37 H 1.08997 * 110.48676 * 124.95496 * 14 8 6 38 38 H 0.96993 * 120.00127 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9979 0.0005 5 7 4.4042 2.0548 0.0001 6 6 5.7296 1.8102 0.0002 7 8 6.1354 0.6673 0.0011 8 6 6.7074 2.9570 -0.0008 9 6 7.5367 3.2350 1.2546 10 6 8.2267 2.7130 -0.0073 11 1 8.6386 1.7038 -0.0113 12 6 8.8339 3.7409 -0.9842 13 6 7.6626 4.1035 -1.9305 14 6 6.4259 4.1295 -0.9629 15 16 3.9346 -0.7098 0.0082 16 6 2.2252 -1.1390 0.0005 17 16 1.5698 -2.7746 0.0019 18 6 3.0667 -3.7040 0.0027 19 1 4.0189 -3.1943 0.0019 20 6 3.0223 -5.0876 0.0034 21 7 1.8603 -5.7097 0.0028 22 14 4.6093 -6.0730 0.0050 23 1 5.3983 -5.7388 1.2179 24 1 5.4000 -5.7400 -1.2071 25 1 4.2913 -7.5235 0.0061 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3633 -0.8903 -0.5135 29 1 4.0797 2.9689 -0.0010 30 1 7.7052 4.2773 1.5251 31 1 7.4294 2.5443 2.0910 32 1 9.1760 4.6241 -0.4448 33 1 9.6558 3.2952 -1.5447 34 1 7.8182 5.0845 -2.3794 35 1 7.5368 3.3412 -2.6994 36 1 5.4921 3.9659 -1.5008 37 1 6.3923 5.0719 -0.4162 38 1 1.0362 -5.1981 0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580300602.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:00 Heat of formation + Delta-G solvation = 16.705260 kcal Electronic energy + Delta-G solvation = -22069.268638 eV Core-core repulsion = 18743.719424 eV Total energy + Delta-G solvation = -3325.549214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90378 -39.04204 -38.18745 -34.82767 -32.93913 -31.92152 -30.72565 -28.82906 -27.17358 -25.19320 -24.85623 -22.98054 -22.07567 -20.81117 -20.42607 -19.14647 -18.33579 -17.65546 -17.15247 -16.10078 -15.78781 -15.60263 -14.97736 -14.39281 -14.04583 -13.94159 -13.76681 -13.52326 -13.36192 -13.21033 -12.65867 -12.39352 -12.29132 -12.11511 -11.94160 -11.53722 -11.43514 -11.36068 -11.13871 -10.88675 -10.64424 -10.59972 -10.31226 -10.20937 -10.09920 -9.75272 -9.52465 -9.09202 -8.77440 -8.60380 -7.89075 -6.97063 -6.62548 -4.34362 1.28805 1.78298 2.31345 2.44815 2.77628 3.07812 3.23856 3.27988 3.28358 3.48034 3.55027 4.02138 4.04364 4.23969 4.36514 4.52496 4.83356 4.89225 4.92333 4.95970 5.05565 5.12578 5.15982 5.28427 5.37919 5.47635 5.53258 5.66596 5.71753 5.85278 5.87320 6.02255 6.06538 6.13481 6.35379 6.40683 6.87922 7.13170 7.68280 7.95157 8.15435 8.41947 8.84679 10.44471 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003723 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.846243 B = 7519.632569 C = 9029.752517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.026 3.974 3 N -0.478 5.478 4 C 0.193 3.807 5 N -0.611 5.611 6 C 0.549 3.451 7 O -0.504 6.504 8 C -0.177 4.177 9 C -0.121 4.121 10 C -0.121 4.121 11 H 0.123 0.877 12 C -0.097 4.097 13 C -0.122 4.122 14 C -0.088 4.088 15 S 0.212 5.788 16 C -0.240 4.240 17 S 0.086 5.914 18 C -0.622 4.622 19 H 0.083 0.917 20 C 0.046 3.954 21 N -0.870 5.870 22 Si 1.081 2.919 23 H -0.279 1.279 24 H -0.279 1.279 25 H -0.274 1.274 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.415 0.585 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 19.942 -0.647 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.116 4.116 3 N -0.199 5.199 4 C -0.177 4.177 5 N -0.260 5.260 6 C 0.335 3.665 7 O -0.378 6.378 8 C -0.180 4.180 9 C -0.158 4.158 10 C -0.140 4.140 11 H 0.141 0.859 12 C -0.134 4.134 13 C -0.160 4.160 14 C -0.126 4.126 15 S 0.456 5.544 16 C -0.477 4.477 17 S 0.334 5.666 18 C -0.771 4.771 19 H 0.101 0.899 20 C -0.165 4.165 21 N -0.503 5.503 22 Si 0.905 3.095 23 H -0.204 1.204 24 H -0.204 1.204 25 H -0.198 1.198 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.253 0.747 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.162 16.965 -0.651 19.786 hybrid contribution -0.404 2.541 0.021 2.573 sum 9.758 19.506 -0.630 21.820 Atomic orbital electron populations 1.20133 0.87963 1.02183 1.01878 1.19096 0.96794 0.84598 1.11132 1.65849 1.02830 1.32200 1.19068 1.23897 0.89950 0.93140 1.10757 1.42353 1.04280 1.08031 1.71288 1.19566 0.81232 0.89711 0.76037 1.90699 1.77125 1.22147 1.47812 1.22200 0.93821 0.97672 1.04324 1.23184 0.98857 1.02905 0.90852 1.23452 0.90600 1.01547 0.98363 0.85862 1.21995 0.97761 0.97632 0.96028 1.23041 0.93412 1.01794 0.97718 1.22360 0.99088 0.95584 0.95532 1.85930 1.01303 0.95104 1.72021 1.28312 1.01442 1.05174 1.12735 1.82488 1.12944 0.87612 1.83517 1.24135 0.92966 0.96371 1.63600 0.89940 1.26193 1.04555 0.94111 0.91670 1.70974 0.98196 1.39048 1.42034 0.83365 0.72573 0.75982 0.77604 1.20445 1.20441 1.19842 0.91757 0.91739 0.91117 0.74732 0.87676 0.87641 0.90918 0.90612 0.90862 0.90920 0.90598 0.90245 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.02 36.00 0.36 -0.73 16 2 C 0.03 0.55 6.73 -83.97 -0.57 -0.01 16 3 N -0.48 -9.68 10.55 -9.78 -0.10 -9.78 16 4 C 0.19 3.78 8.40 -87.19 -0.73 3.04 16 5 N -0.61 -9.19 5.22 -11.78 -0.06 -9.25 16 6 C 0.55 8.13 7.38 -10.98 -0.08 8.05 16 7 O -0.50 -9.46 14.31 5.56 0.08 -9.38 16 8 C -0.18 -1.81 2.63 -154.54 -0.41 -2.21 16 9 C -0.12 -1.02 9.85 -26.73 -0.26 -1.28 16 10 C -0.12 -1.12 6.54 -89.50 -0.59 -1.71 16 11 H 0.12 1.32 8.14 -51.92 -0.42 0.90 16 12 C -0.10 -0.67 6.63 -25.07 -0.17 -0.83 16 13 C -0.12 -0.86 6.96 -23.54 -0.16 -1.03 16 14 C -0.09 -0.67 6.34 -23.88 -0.15 -0.82 16 15 S 0.21 4.77 18.35 -107.50 -1.97 2.80 16 16 C -0.24 -5.64 6.67 29.46 0.20 -5.44 16 17 S 0.09 2.17 19.76 -107.50 -2.12 0.04 16 18 C -0.62 -17.34 9.26 30.80 0.29 -17.06 16 19 H 0.08 2.30 5.97 -52.48 -0.31 1.98 16 20 C 0.05 1.28 5.49 -17.49 -0.10 1.18 16 21 N -0.87 -25.15 13.68 55.47 0.76 -24.39 16 22 Si 1.08 24.31 29.91 -169.99 -5.08 19.23 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.24 7.38 -51.92 -0.38 0.86 16 29 H 0.42 4.86 8.29 -40.82 -0.34 4.52 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.60 7.56 -51.93 -0.39 0.21 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.28 7.90 7.12 -40.82 -0.29 7.61 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -32.53 343.76 -10.44 -42.97 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.74 Total: 1.43 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.37 Total: -18.85 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.59 Total: -43.42 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -4.10 Total: 2.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.53 -10.44 -42.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580300602.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.676 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds