Wall clock time and date at job start Tue Mar 31 2020 13:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31592 * 122.22573 * 2 1 4 4 C 1.29943 * 117.13654 * 179.97438 * 3 2 1 5 5 N 1.38894 * 125.36649 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99950 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99579 * 179.97438 * 6 5 4 9 9 C 1.53008 * 119.29480 * 109.76494 * 8 6 5 10 10 C 1.53003 * 60.37468 * 111.30497 * 9 8 6 11 11 H 1.09010 * 119.29573 * 248.69249 * 10 9 8 12 12 C 1.54263 * 118.19868 * 93.61802 * 10 9 8 13 13 C 1.54890 * 104.19422 * 272.20716 * 12 10 9 14 14 C 1.54260 * 117.41417 * 315.42542 * 8 6 5 15 15 S 1.76148 * 109.27152 * 359.75551 * 4 3 2 16 16 C 1.34652 * 122.23262 * 179.97438 * 2 1 3 17 17 S 1.76200 * 125.93335 * 359.97438 * 16 2 1 18 18 C 1.76191 * 100.00185 * 180.02562 * 17 16 2 19 19 H 1.08003 * 120.00317 * 359.97438 * 18 17 16 20 20 C 1.38430 * 120.00040 * 180.02562 * 18 17 16 21 21 N 1.31814 * 119.99876 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00205 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99741 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99921 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 H 1.09000 * 109.47358 * 270.02492 * 1 2 3 27 27 H 1.08999 * 109.47623 * 30.03155 * 1 2 3 28 28 H 1.09010 * 109.46652 * 150.02629 * 1 2 3 29 29 H 0.97004 * 119.99976 * 359.97438 * 5 4 3 30 30 H 1.08998 * 117.45925 * 218.90401 * 9 8 6 31 31 H 1.08996 * 117.46263 * 3.71084 * 9 8 6 32 32 H 1.08997 * 110.49012 * 30.88753 * 12 10 9 33 33 H 1.09001 * 110.48789 * 153.40045 * 12 10 9 34 34 H 1.08997 * 110.75570 * 156.25667 * 13 12 10 35 35 H 1.09003 * 110.75722 * 279.63012 * 13 12 10 36 36 H 1.09001 * 110.48653 * 2.30321 * 14 8 6 37 37 H 1.08997 * 110.48676 * 124.95496 * 14 8 6 38 38 H 0.96993 * 120.00127 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9979 0.0005 5 7 4.4042 2.0548 0.0001 6 6 5.7296 1.8102 0.0002 7 8 6.1354 0.6673 0.0011 8 6 6.7074 2.9570 -0.0008 9 6 7.5367 3.2350 1.2546 10 6 8.2267 2.7130 -0.0073 11 1 8.6386 1.7038 -0.0113 12 6 8.8339 3.7409 -0.9842 13 6 7.6626 4.1035 -1.9305 14 6 6.4259 4.1295 -0.9629 15 16 3.9346 -0.7098 0.0082 16 6 2.2252 -1.1390 0.0005 17 16 1.5698 -2.7746 0.0019 18 6 3.0667 -3.7040 0.0027 19 1 4.0189 -3.1943 0.0019 20 6 3.0223 -5.0876 0.0034 21 7 1.8603 -5.7097 0.0028 22 14 4.6093 -6.0730 0.0050 23 1 5.3983 -5.7388 1.2179 24 1 5.4000 -5.7400 -1.2071 25 1 4.2913 -7.5235 0.0061 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3633 -0.8903 -0.5135 29 1 4.0797 2.9689 -0.0010 30 1 7.7052 4.2773 1.5251 31 1 7.4294 2.5443 2.0910 32 1 9.1760 4.6241 -0.4448 33 1 9.6558 3.2952 -1.5447 34 1 7.8182 5.0845 -2.3794 35 1 7.5368 3.3412 -2.6994 36 1 5.4921 3.9659 -1.5008 37 1 6.3923 5.0719 -0.4162 38 1 1.0362 -5.1981 0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580300602.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:59 Heat of formation + Delta-G solvation = -2.726792 kcal Electronic energy + Delta-G solvation = -22070.111275 eV Core-core repulsion = 18743.719424 eV Total energy + Delta-G solvation = -3326.391851 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.98990 -40.52037 -39.36660 -36.27371 -35.01828 -32.56952 -32.22854 -29.57314 -28.83946 -27.24071 -26.11224 -23.91825 -23.17374 -22.09700 -21.34507 -20.79085 -19.76479 -19.27336 -18.32721 -17.70479 -17.00904 -16.89423 -16.14047 -15.89943 -15.68436 -15.37116 -14.97650 -14.70647 -14.63073 -14.20739 -14.16281 -13.95109 -13.64814 -13.40003 -13.03817 -12.98155 -12.43222 -12.23788 -12.18163 -12.09913 -12.02900 -11.97751 -11.88021 -11.44038 -11.34830 -11.07344 -10.83462 -10.78812 -10.58514 -10.52891 -9.66853 -9.12420 -8.53810 -6.45644 -0.37900 0.06642 0.69530 1.03749 1.22201 1.41722 1.49713 1.51900 1.73190 1.86692 2.16247 2.50644 2.83378 2.89935 3.30840 3.44144 3.51845 3.66721 3.81042 4.18501 4.29309 4.35870 4.43823 4.57376 4.58753 4.68001 4.74321 4.76893 4.84148 4.93524 4.95236 4.96158 5.13573 5.18277 5.24479 5.34618 5.44690 5.50939 5.85043 5.99368 6.67461 6.73892 6.77211 8.30301 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003723 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.846243 B = 7519.632569 C = 9029.752517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.046 3.954 3 N -0.483 5.483 4 C 0.232 3.768 5 N -0.599 5.599 6 C 0.546 3.454 7 O -0.544 6.544 8 C -0.187 4.187 9 C -0.102 4.102 10 C -0.128 4.128 11 H 0.098 0.902 12 C -0.090 4.090 13 C -0.123 4.123 14 C -0.083 4.083 15 S 0.163 5.837 16 C -0.274 4.274 17 S 0.050 5.950 18 C -0.639 4.639 19 H 0.074 0.926 20 C 0.003 3.997 21 N -0.895 5.895 22 Si 1.121 2.879 23 H -0.267 1.267 24 H -0.267 1.267 25 H -0.265 1.265 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.435 0.565 30 H 0.141 0.859 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 23.786 -0.539 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 N -0.205 5.205 4 C -0.141 4.141 5 N -0.250 5.250 6 C 0.334 3.666 7 O -0.420 6.420 8 C -0.190 4.190 9 C -0.139 4.139 10 C -0.147 4.147 11 H 0.117 0.883 12 C -0.127 4.127 13 C -0.160 4.160 14 C -0.120 4.120 15 S 0.409 5.591 16 C -0.510 4.510 17 S 0.296 5.704 18 C -0.788 4.788 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.529 5.529 22 Si 0.938 3.062 23 H -0.192 1.192 24 H -0.192 1.192 25 H -0.190 1.190 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.277 0.723 30 H 0.159 0.841 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.544 20.894 -0.546 23.877 hybrid contribution -0.729 1.688 -0.005 1.839 sum 10.815 22.582 -0.550 25.044 Atomic orbital electron populations 1.20279 0.85364 1.03321 1.03292 1.19801 0.98602 0.84080 1.07035 1.66073 1.02569 1.31141 1.20717 1.24229 0.90311 0.93123 1.06404 1.42557 1.03910 1.07872 1.70631 1.20641 0.81354 0.90568 0.74020 1.90692 1.77578 1.24480 1.49247 1.22322 0.92904 0.97037 1.06774 1.23329 0.96413 1.04585 0.89603 1.23587 0.89851 1.01478 0.99819 0.88348 1.22021 0.97568 0.97661 0.95457 1.23062 0.93184 1.02511 0.97240 1.22450 0.99072 0.95447 0.95045 1.86135 1.02001 0.97992 1.73007 1.28184 1.01738 1.04642 1.16408 1.82294 1.12456 0.89069 1.86611 1.24354 0.93639 0.97081 1.63686 0.90799 1.27556 1.06632 0.95290 0.90744 1.71050 0.98434 1.39038 1.44376 0.82910 0.69591 0.75169 0.78513 1.19160 1.19188 1.18967 0.90076 0.89145 0.91368 0.72274 0.84068 0.88918 0.88425 0.90514 0.88454 0.92851 0.91052 0.87201 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.13 10.02 71.24 0.71 -1.41 16 2 C 0.05 1.92 6.73 41.77 0.28 2.20 16 3 N -0.48 -18.75 10.55 -184.87 -1.95 -20.71 16 4 C 0.23 8.82 8.40 179.15 1.50 10.33 16 5 N -0.60 -16.89 5.22 -309.56 -1.62 -18.51 16 6 C 0.55 15.57 7.38 87.66 0.65 16.21 16 7 O -0.54 -20.66 14.31 -3.04 -0.04 -20.70 16 8 C -0.19 -3.35 2.63 -52.20 -0.14 -3.49 16 9 C -0.10 -1.40 9.85 30.60 0.30 -1.10 16 10 C -0.13 -2.13 6.54 -10.07 -0.07 -2.20 16 11 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 12 C -0.09 -0.94 6.63 31.67 0.21 -0.73 16 13 C -0.12 -1.32 6.96 32.66 0.23 -1.09 16 14 C -0.08 -0.95 6.34 32.44 0.21 -0.74 16 15 S 0.16 7.54 18.35 -56.49 -1.04 6.50 16 16 C -0.27 -13.16 6.67 67.00 0.45 -12.71 16 17 S 0.05 2.62 19.76 -56.49 -1.12 1.50 16 18 C -0.64 -37.11 9.26 67.87 0.63 -36.48 16 19 H 0.07 4.30 5.97 -2.91 -0.02 4.29 16 20 C 0.00 0.19 5.49 84.74 0.46 0.66 16 21 N -0.90 -53.49 13.68 21.59 0.30 -53.19 16 22 Si 1.12 49.87 29.91 68.60 2.05 51.92 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.07 2.36 7.38 -2.38 -0.02 2.34 16 29 H 0.44 8.86 8.29 -92.71 -0.77 8.10 16 30 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.89 7.56 -2.39 -0.02 0.87 16 37 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.27 15.97 7.12 -92.71 -0.66 15.31 16 Total: -1.00 -74.04 343.76 2.46 -71.58 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.45 Total: 12.16 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 5.43 Total: -30.55 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -3.27 Total: -92.41 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.04 Total: -20.70 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.92 kcal Atomic # 16 Polarization: 10.16 SS G_CDS: -2.15 Total: 8.00 kcal Total: -74.04 2.46 -71.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580300602.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.856 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds