Wall clock time and date at job start Tue Mar 31 2020 13:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47050 * 269.99939 * 3 2 1 5 5 H 1.48501 * 109.46926 * 29.99728 * 3 2 1 6 6 H 1.48501 * 109.46798 * 149.99870 * 3 2 1 7 7 C 1.37876 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00091 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99468 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47138 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47138 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47291 * 180.02562 * 12 11 10 14 14 N 1.30973 * 126.43601 * 90.02624 * 13 12 11 15 15 C 1.35233 * 105.57574 * 180.02562 * 14 13 12 16 16 C 1.48375 * 126.41222 * 179.97438 * 15 14 13 17 17 C 1.39360 * 120.12739 * 359.69703 * 16 15 14 18 18 C 1.37980 * 119.92350 * 179.80783 * 17 16 15 19 19 C 1.38360 * 120.18981 * 0.44902 * 18 17 16 20 20 C 1.38324 * 120.26327 * 359.78130 * 19 18 17 21 21 Cl 1.73597 * 119.97071 * 179.97438 * 20 19 18 22 22 C 1.38424 * 120.06907 * 0.02562 * 20 19 18 23 23 F 1.35101 * 120.09762 * 179.97438 * 22 20 19 24 24 N 1.30777 * 107.17075 * 359.97438 * 15 14 13 25 25 O 1.21293 * 110.09496 * 0.02562 * 24 15 14 26 26 H 0.96993 * 119.99673 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47451 * 60.00542 * 9 7 2 28 28 H 1.08994 * 109.47281 * 299.99390 * 9 7 2 29 29 H 1.09005 * 109.46928 * 59.99953 * 10 9 7 30 30 H 1.08998 * 109.47217 * 300.00020 * 10 9 7 31 31 H 1.08993 * 109.47554 * 60.00394 * 11 10 9 32 32 H 1.08994 * 109.47229 * 299.99654 * 11 10 9 33 33 H 1.09005 * 109.46928 * 60.00029 * 12 11 10 34 34 H 1.08998 * 109.47217 * 300.00096 * 12 11 10 35 35 H 1.07997 * 120.04339 * 0.02562 * 17 16 15 36 36 H 1.07998 * 119.90503 * 180.18822 * 18 17 16 37 37 H 1.08004 * 119.86937 * 179.76392 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6364 0.0022 12 6 6.0616 -4.0789 0.0040 13 6 7.5686 -4.0789 0.0046 14 7 8.3461 -4.0782 1.0586 15 6 9.6100 -4.0780 0.5776 16 6 10.8579 -4.0767 1.3802 17 6 10.7941 -4.0692 2.7724 18 6 11.9572 -4.0720 3.5147 19 6 13.1871 -4.0729 2.8809 20 6 13.2595 -4.0755 1.4995 21 17 14.8067 -4.0759 0.7122 22 6 12.0995 -4.0767 0.7442 23 9 12.1695 -4.0787 -0.6050 24 7 9.5263 -4.0791 -0.7275 25 8 8.3629 -4.0794 -1.0705 26 1 -0.4849 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8912 28 1 3.8752 -0.6804 -0.8888 29 1 3.6586 -3.1509 -0.8875 30 1 3.6580 -3.1497 0.8924 31 1 5.9150 -2.1220 0.8917 32 1 5.9149 -2.1234 -0.8882 33 1 5.6983 -4.5939 -0.8853 34 1 5.6984 -4.5917 0.8947 35 1 9.8355 -4.0647 3.2697 36 1 11.9075 -4.0693 4.5935 37 1 14.0943 -4.0712 3.4670 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589144368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:58 Heat of formation + Delta-G solvation = 24.877040 kcal Electronic energy + Delta-G solvation = -23173.213111 eV Core-core repulsion = 19279.761370 eV Total energy + Delta-G solvation = -3893.451741 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.38623 -45.73515 -39.69603 -37.16535 -36.39141 -35.69320 -33.62830 -32.33052 -31.30532 -31.01375 -29.75463 -26.16306 -25.35897 -23.80011 -22.98290 -22.33823 -21.19085 -20.19831 -18.47520 -18.24363 -17.72184 -17.05822 -16.67867 -16.60815 -16.22973 -15.29731 -15.18881 -15.01743 -14.50011 -14.24147 -13.84834 -13.60738 -13.20695 -12.95505 -12.83109 -12.65677 -12.58963 -12.39926 -12.12448 -11.86728 -11.74610 -11.53736 -11.32688 -11.21087 -10.95845 -10.69084 -10.54947 -9.95717 -9.76745 -9.61254 -9.31924 -9.23310 -9.18356 -8.55051 -6.05708 -4.03853 0.01878 0.37668 1.07516 1.40983 2.03387 2.64185 2.94912 3.03678 3.30011 3.37752 3.41058 3.45031 3.65133 4.13022 4.26793 4.44133 4.52420 4.70564 4.78299 5.01467 5.05650 5.15304 5.26305 5.28650 5.31142 5.52453 5.57668 5.63280 5.73375 5.85249 5.87710 6.00169 6.16792 6.48517 6.59225 6.85644 7.26822 7.39695 7.77863 7.91137 8.51902 8.99248 9.57000 11.07684 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.002053 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.991574 B =13635.977390 C =13839.782488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.101 4.101 11 C -0.119 4.119 12 C -0.032 4.032 13 C 0.205 3.795 14 N -0.475 5.475 15 C 0.198 3.802 16 C -0.039 4.039 17 C -0.043 4.043 18 C -0.119 4.119 19 C -0.066 4.066 20 C -0.080 4.080 21 Cl -0.042 7.042 22 C 0.141 3.859 23 F -0.108 7.108 24 N -0.364 5.364 25 O 0.087 5.913 26 H 0.263 0.737 27 H 0.016 0.984 28 H 0.011 0.989 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.611 -11.231 6.139 31.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.138 4.138 11 C -0.158 4.158 12 C -0.070 4.070 13 C -0.015 4.015 14 N -0.208 5.208 15 C -0.072 4.072 16 C -0.042 4.042 17 C -0.063 4.063 18 C -0.138 4.138 19 C -0.086 4.086 20 C -0.108 4.108 21 Cl -0.013 7.013 22 C 0.119 3.881 23 F -0.086 7.086 24 N -0.069 5.069 25 O 0.024 5.976 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.172 0.828 36 H 0.167 0.833 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 29.385 -11.120 5.897 31.968 hybrid contribution 0.387 0.977 -0.447 1.142 sum 29.773 -10.143 5.450 31.922 Atomic orbital electron populations 1.69916 1.06293 1.26882 1.51174 1.25048 0.94740 0.99208 0.94600 0.86781 0.80350 0.83655 0.78508 1.20315 1.21419 1.19031 1.21146 0.89515 0.94456 1.50773 0.90971 1.19581 0.97151 0.92228 0.96324 1.21458 0.90367 1.00341 1.01658 1.21781 0.98934 0.92229 1.02836 1.20580 0.78520 1.01663 1.06284 1.29141 0.98989 0.93526 0.79867 1.71977 0.98955 1.21142 1.28713 1.23444 0.92715 1.03322 0.87695 1.17272 0.86285 1.07658 0.92967 1.21318 1.00609 0.93611 0.90720 1.21189 0.90718 1.00615 1.01229 1.21186 0.99795 0.96429 0.91146 1.20831 0.86436 1.09945 0.93598 1.98406 1.25540 1.96934 1.80424 1.17327 0.91800 1.01064 0.77943 1.91627 1.96841 1.92860 1.27240 1.75056 0.97541 1.19835 1.14493 1.85325 1.11146 1.65137 1.35944 0.92750 0.96618 0.97025 0.92238 0.92233 0.91427 0.91563 0.87636 0.86908 0.82801 0.83255 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.02 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.10 -1.75 5.15 -26.73 -0.14 -1.88 16 11 C -0.12 -1.63 5.20 -26.73 -0.14 -1.77 16 12 C -0.03 -0.33 5.84 -27.88 -0.16 -0.50 16 13 C 0.20 2.55 7.75 -12.99 -0.10 2.45 16 14 N -0.48 -6.32 11.26 -9.88 -0.11 -6.43 16 15 C 0.20 2.69 7.79 -156.11 -1.22 1.48 16 16 C -0.04 -0.44 5.88 -104.83 -0.62 -1.06 16 17 C -0.04 -0.35 9.70 -39.26 -0.38 -0.73 16 18 C -0.12 -0.67 10.03 -39.63 -0.40 -1.07 16 19 C -0.07 -0.40 9.82 -39.50 -0.39 -0.79 16 20 C -0.08 -0.71 6.32 -39.48 -0.25 -0.96 16 21 Cl -0.04 -0.36 28.61 -51.86 -1.48 -1.84 16 22 C 0.14 1.58 7.25 -39.04 -0.28 1.30 16 23 F -0.11 -1.42 15.39 2.25 0.03 -1.39 16 24 N -0.36 -5.35 10.87 30.97 0.34 -5.01 16 25 O 0.09 1.18 11.29 18.02 0.20 1.38 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 28 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.15 1.16 7.88 -52.49 -0.41 0.74 16 36 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 37 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -32.50 343.42 -8.50 -41.01 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: -4.15 Total: -5.91 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -4.61 Total: -17.02 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 1.00 Total: -38.27 kcal Atomic # 8 Polarization: 1.18 SS G_CDS: 0.20 Total: 1.38 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.03 Total: -1.39 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.48 Total: -1.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.50 -8.50 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589144368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.884 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds