Wall clock time and date at job start Tue Mar 31 2020 13:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47050 * 269.99939 * 3 2 1 5 5 H 1.48501 * 109.46926 * 29.99728 * 3 2 1 6 6 H 1.48501 * 109.46798 * 149.99870 * 3 2 1 7 7 C 1.37876 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00091 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99468 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47138 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47138 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47291 * 180.02562 * 12 11 10 14 14 N 1.30973 * 126.43601 * 90.02624 * 13 12 11 15 15 C 1.35233 * 105.57574 * 180.02562 * 14 13 12 16 16 C 1.48375 * 126.41222 * 179.97438 * 15 14 13 17 17 C 1.39360 * 120.12739 * 359.69703 * 16 15 14 18 18 C 1.37980 * 119.92350 * 179.80783 * 17 16 15 19 19 C 1.38360 * 120.18981 * 0.44902 * 18 17 16 20 20 C 1.38324 * 120.26327 * 359.78130 * 19 18 17 21 21 Cl 1.73597 * 119.97071 * 179.97438 * 20 19 18 22 22 C 1.38424 * 120.06907 * 0.02562 * 20 19 18 23 23 F 1.35101 * 120.09762 * 179.97438 * 22 20 19 24 24 N 1.30777 * 107.17075 * 359.97438 * 15 14 13 25 25 O 1.21293 * 110.09496 * 0.02562 * 24 15 14 26 26 H 0.96993 * 119.99673 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47451 * 60.00542 * 9 7 2 28 28 H 1.08994 * 109.47281 * 299.99390 * 9 7 2 29 29 H 1.09005 * 109.46928 * 59.99953 * 10 9 7 30 30 H 1.08998 * 109.47217 * 300.00020 * 10 9 7 31 31 H 1.08993 * 109.47554 * 60.00394 * 11 10 9 32 32 H 1.08994 * 109.47229 * 299.99654 * 11 10 9 33 33 H 1.09005 * 109.46928 * 60.00029 * 12 11 10 34 34 H 1.08998 * 109.47217 * 300.00096 * 12 11 10 35 35 H 1.07997 * 120.04339 * 0.02562 * 17 16 15 36 36 H 1.07998 * 119.90503 * 180.18822 * 18 17 16 37 37 H 1.08004 * 119.86937 * 179.76392 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6364 0.0022 12 6 6.0616 -4.0789 0.0040 13 6 7.5686 -4.0789 0.0046 14 7 8.3461 -4.0782 1.0586 15 6 9.6100 -4.0780 0.5776 16 6 10.8579 -4.0767 1.3802 17 6 10.7941 -4.0692 2.7724 18 6 11.9572 -4.0720 3.5147 19 6 13.1871 -4.0729 2.8809 20 6 13.2595 -4.0755 1.4995 21 17 14.8067 -4.0759 0.7122 22 6 12.0995 -4.0767 0.7442 23 9 12.1695 -4.0787 -0.6050 24 7 9.5263 -4.0791 -0.7275 25 8 8.3629 -4.0794 -1.0705 26 1 -0.4849 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8912 28 1 3.8752 -0.6804 -0.8888 29 1 3.6586 -3.1509 -0.8875 30 1 3.6580 -3.1497 0.8924 31 1 5.9150 -2.1220 0.8917 32 1 5.9149 -2.1234 -0.8882 33 1 5.6983 -4.5939 -0.8853 34 1 5.6984 -4.5917 0.8947 35 1 9.8355 -4.0647 3.2697 36 1 11.9075 -4.0693 4.5935 37 1 14.0943 -4.0712 3.4670 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589144368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:57 Heat of formation + Delta-G solvation = 5.760493 kcal Electronic energy + Delta-G solvation = -23174.042067 eV Core-core repulsion = 19279.761370 eV Total energy + Delta-G solvation = -3894.280697 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.22615 -46.72717 -40.31692 -37.83527 -37.48297 -36.76414 -35.16450 -33.88302 -32.14405 -31.74625 -31.09260 -27.68779 -26.19236 -24.83173 -23.74427 -23.57439 -22.12996 -21.75702 -19.31972 -19.21876 -18.78674 -18.54113 -17.80035 -17.35289 -17.05310 -16.46052 -16.29921 -15.90679 -15.66915 -15.44218 -14.74012 -14.57088 -14.38824 -14.30383 -14.05927 -13.68616 -13.58839 -13.45892 -13.30889 -12.85460 -12.73164 -12.55617 -12.39976 -12.26296 -12.17395 -12.06649 -11.75676 -11.69986 -11.32597 -11.25860 -11.09890 -10.72802 -9.98649 -9.93458 -8.26282 -6.29196 -0.69641 -0.24521 0.15424 0.77589 1.16569 1.37481 1.38950 1.50547 1.71599 2.21181 2.30935 2.38224 2.68277 2.84721 3.09571 3.48253 3.63548 3.88189 4.01593 4.04793 4.09982 4.13069 4.32772 4.53885 4.61183 4.65337 4.72925 4.78329 4.82242 4.85479 4.99546 5.10883 5.13828 5.19195 5.25962 5.45653 5.63843 5.69766 5.72341 6.33385 6.80105 6.95164 7.35475 8.90319 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.002053 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.991574 B =13635.977390 C =13839.782488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.528 4.528 8 H 0.037 0.963 9 C -0.018 4.018 10 C -0.093 4.093 11 C -0.108 4.108 12 C -0.023 4.023 13 C 0.208 3.792 14 N -0.484 5.484 15 C 0.195 3.805 16 C -0.067 4.067 17 C -0.043 4.043 18 C -0.099 4.099 19 C -0.051 4.051 20 C -0.087 4.087 21 Cl -0.045 7.045 22 C 0.114 3.886 23 F -0.129 7.129 24 N -0.393 5.393 25 O 0.079 5.921 26 H 0.265 0.735 27 H 0.017 0.983 28 H 0.016 0.984 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.160 0.840 36 H 0.192 0.808 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.014 -11.091 8.009 33.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.566 4.566 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.147 4.147 12 C -0.061 4.061 13 C -0.012 4.012 14 N -0.217 5.217 15 C -0.074 4.074 16 C -0.070 4.070 17 C -0.063 4.063 18 C -0.117 4.117 19 C -0.070 4.070 20 C -0.115 4.115 21 Cl -0.016 7.016 22 C 0.091 3.909 23 F -0.108 7.108 24 N -0.100 5.100 25 O 0.019 5.981 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.178 0.822 36 H 0.209 0.791 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 31.793 -10.997 7.761 34.525 hybrid contribution -0.370 0.858 -0.942 1.327 sum 31.423 -10.139 6.819 33.715 Atomic orbital electron populations 1.70073 1.08235 1.27983 1.53070 1.26031 0.95602 1.03503 0.94483 0.85687 0.79518 0.78556 0.79046 1.19415 1.21232 1.17052 1.21573 0.92355 0.93100 1.49622 0.94490 1.19590 0.93686 0.95910 0.96364 1.21301 0.92921 0.96869 1.02005 1.21557 0.96015 0.94339 1.02767 1.20579 0.77255 0.99924 1.08358 1.29440 0.99431 0.92790 0.79566 1.71979 0.99014 1.21672 1.29030 1.23941 0.93667 1.02197 0.87639 1.17516 0.85418 1.09975 0.94130 1.21543 1.02086 0.93147 0.89512 1.21654 0.89282 0.97771 1.02964 1.21660 1.01462 0.93939 0.89977 1.21037 0.85620 1.10244 0.94579 1.98403 1.25405 1.96967 1.80814 1.17641 0.92858 1.03027 0.77330 1.91559 1.96990 1.93339 1.28881 1.75048 0.98032 1.21532 1.15410 1.85293 1.11063 1.65452 1.36264 0.92662 0.96491 0.96552 0.91881 0.92069 0.91806 0.91458 0.85285 0.85280 0.82214 0.79128 0.79913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 2 C 0.00 0.01 5.47 84.65 0.46 0.47 16 3 Si 0.95 44.10 27.47 68.60 1.88 45.99 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 7 C -0.53 -29.71 9.66 25.60 0.25 -29.46 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 9 C -0.02 -0.80 4.04 29.85 0.12 -0.68 16 10 C -0.09 -3.10 5.15 30.59 0.16 -2.94 16 11 C -0.11 -2.74 5.20 30.59 0.16 -2.58 16 12 C -0.02 -0.43 5.84 29.85 0.17 -0.26 16 13 C 0.21 4.93 7.75 88.36 0.68 5.61 16 14 N -0.48 -12.44 11.26 -302.48 -3.41 -15.85 16 15 C 0.20 5.30 7.79 137.27 1.07 6.37 16 16 C -0.07 -1.49 5.88 -20.00 -0.12 -1.61 16 17 C -0.04 -0.61 9.70 22.48 0.22 -0.40 16 18 C -0.10 -0.72 10.03 22.24 0.22 -0.49 16 19 C -0.05 -0.44 9.82 22.32 0.22 -0.23 16 20 C -0.09 -1.41 6.32 22.33 0.14 -1.27 16 21 Cl -0.04 -0.72 28.61 -2.72 -0.08 -0.80 16 22 C 0.11 2.54 7.25 22.62 0.16 2.70 16 23 F -0.13 -3.57 15.39 44.97 0.69 -2.88 16 24 N -0.39 -11.74 10.87 -59.10 -0.64 -12.38 16 25 O 0.08 2.14 11.29 74.56 0.84 2.98 16 26 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 27 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 28 H 0.02 0.70 7.57 -2.39 -0.02 0.69 16 29 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.16 2.04 7.88 -2.91 -0.02 2.02 16 36 H 0.19 -0.14 8.06 -2.91 -0.02 -0.17 16 37 H 0.18 0.35 8.06 -2.91 -0.02 0.32 16 Total: -1.00 -73.45 343.42 4.56 -68.89 By element: Atomic # 1 Polarization: -3.05 SS G_CDS: 1.05 Total: -2.00 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 3.92 Total: -24.75 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -3.75 Total: -87.42 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.84 Total: 2.98 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.69 Total: -2.88 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -73.45 4.56 -68.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589144368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.647 kcal (2) G-P(sol) polarization free energy of solvation -73.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds