Wall clock time and date at job start Tue Mar 31 2020 13:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00238 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46953 * 179.97438 * 12 11 10 14 14 N 1.30968 * 126.43259 * 89.71284 * 13 12 11 15 15 C 1.35236 * 105.57816 * 179.89955 * 14 13 12 16 16 C 1.48351 * 126.41975 * 180.13769 * 15 14 13 17 17 C 1.39365 * 120.12166 * 180.30119 * 16 15 14 18 18 C 1.37946 * 119.91604 * 179.97438 * 17 16 15 19 19 C 1.38503 * 120.16526 * 359.97438 * 18 17 16 20 20 Cl 1.73600 * 119.88062 * 179.97438 * 19 18 17 21 21 C 1.38360 * 120.24759 * 0.02562 * 19 18 17 22 22 C 1.38275 * 120.07861 * 359.74327 * 21 19 18 23 23 F 1.35104 * 120.08243 * 180.25625 * 22 21 19 24 24 N 1.30795 * 107.16318 * 0.36778 * 15 14 13 25 25 O 1.21283 * 110.09031 * 359.77100 * 24 15 14 26 26 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 28 28 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 29 29 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 30 30 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 31 31 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 32 32 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 33 33 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 34 34 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 35 35 H 1.07994 * 120.03982 * 359.95700 * 17 16 15 36 36 H 1.07997 * 119.91747 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.95964 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7210 -7.4552 -0.0018 14 7 1.3271 -8.1259 -1.0555 15 6 0.6995 -9.2228 -0.5741 16 6 0.0750 -10.3033 -1.3761 17 6 -0.5457 -11.3769 -0.7401 18 6 -1.1255 -12.3790 -1.4901 19 6 -1.0928 -12.3207 -2.8735 20 17 -1.8242 -13.5863 -3.8100 21 6 -0.4784 -11.2581 -3.5119 22 6 0.1018 -10.2456 -2.7702 23 9 0.6973 -9.2053 -3.3936 24 7 0.7419 -9.1501 0.7311 25 8 1.3240 -8.1427 1.0736 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6045 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.8533 -5.0451 0.8886 32 1 0.8538 -5.0445 -0.8914 33 1 3.1011 -6.0919 -0.8918 34 1 3.1011 -6.0928 0.8882 35 1 -0.5725 -11.4242 0.3384 36 1 -1.6069 -13.2107 -0.9972 37 1 -0.4560 -11.2171 -4.5909 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590277663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:00 Heat of formation + Delta-G solvation = 2.817508 kcal Electronic energy + Delta-G solvation = -23070.090627 eV Core-core repulsion = 19175.682312 eV Total energy + Delta-G solvation = -3894.408314 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.09201 -46.69907 -40.37008 -37.78955 -37.46296 -36.73051 -35.20261 -33.81493 -32.19717 -31.70718 -30.84769 -27.52304 -26.02567 -25.11344 -24.01687 -23.52028 -22.10982 -21.78833 -19.34767 -19.23206 -18.56550 -18.37350 -17.62346 -17.33594 -16.85995 -16.54331 -16.38541 -16.18388 -15.67861 -15.12544 -14.69554 -14.65250 -14.45542 -14.32807 -13.74399 -13.69507 -13.52148 -13.44253 -13.35979 -12.85359 -12.79457 -12.46779 -12.29484 -12.26618 -12.16690 -12.15540 -12.10245 -11.50590 -11.36063 -11.23366 -10.94173 -10.53207 -10.23626 -9.78255 -8.17512 -6.28200 -0.80310 -0.15253 0.12054 0.80456 1.13831 1.42175 1.42530 1.55775 1.68218 2.22703 2.25454 2.43327 2.67022 2.96547 3.16144 3.45300 3.69177 3.77483 3.88010 4.02744 4.07946 4.18489 4.25802 4.50385 4.61925 4.65602 4.72522 4.79361 4.80207 4.89453 4.91157 4.92576 5.16851 5.32327 5.33900 5.36806 5.59047 5.81726 5.91444 6.28229 6.90960 6.93362 7.41364 8.94618 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.001924 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.396541 B =14548.083712 C =15104.462891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.106 4.106 12 C -0.021 4.021 13 C 0.209 3.791 14 N -0.496 5.496 15 C 0.195 3.805 16 C -0.074 4.074 17 C -0.040 4.040 18 C -0.108 4.108 19 C 0.009 3.991 20 Cl -0.037 7.037 21 C -0.147 4.147 22 C 0.138 3.862 23 F -0.124 7.124 24 N -0.383 5.383 25 O 0.081 5.919 26 H 0.262 0.738 27 H -0.014 1.014 28 H -0.009 1.009 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.161 0.839 36 H 0.180 0.820 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -30.044 -3.712 30.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.059 4.059 13 C -0.011 4.011 14 N -0.228 5.228 15 C -0.075 4.075 16 C -0.077 4.077 17 C -0.060 4.060 18 C -0.127 4.127 19 C -0.018 4.018 20 Cl -0.008 7.008 21 C -0.166 4.166 22 C 0.116 3.884 23 F -0.102 7.102 24 N -0.091 5.091 25 O 0.021 5.979 26 H 0.071 0.929 27 H 0.004 0.996 28 H 0.009 0.991 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.179 0.821 36 H 0.197 0.803 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.384 -30.682 -3.717 30.908 hybrid contribution 0.043 1.496 -0.260 1.519 sum -0.341 -29.186 -3.977 29.457 Atomic orbital electron populations 1.70117 1.07918 1.27580 1.52161 1.26035 0.95758 1.03563 0.95003 0.85393 0.79288 0.78781 0.77554 1.18159 1.20749 1.20565 1.21804 0.93813 0.92287 1.49744 0.91582 1.19069 0.94723 0.93559 0.94611 1.21417 0.97907 0.92011 1.01946 1.21516 0.97758 0.93244 1.01957 1.20565 0.96192 0.80806 1.08342 1.29405 0.94654 0.97554 0.79468 1.72184 1.16121 1.05242 1.29289 1.23963 1.00018 0.95409 0.88064 1.17728 1.04726 0.94796 0.90416 1.21202 0.92873 0.90102 1.01795 1.21351 1.00030 1.00266 0.91038 1.20901 0.97320 0.91053 0.92565 1.98421 1.80613 1.49189 1.72541 1.21096 1.00392 0.92630 1.02487 1.17599 0.95745 0.86116 0.88954 1.91602 1.80803 1.55573 1.82244 1.74815 1.15773 1.04056 1.14448 1.85254 1.51864 1.24791 1.35996 0.92947 0.99600 0.99103 0.91224 0.92024 0.91928 0.93153 0.85677 0.84660 0.82125 0.80265 0.81280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 3 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 0.90 4.97 29.85 0.15 1.05 16 10 C -0.10 -3.50 5.15 30.60 0.16 -3.34 16 11 C -0.11 -3.20 5.20 30.60 0.16 -3.04 16 12 C -0.02 -0.45 5.84 29.85 0.17 -0.28 16 13 C 0.21 5.48 7.75 88.36 0.68 6.16 16 14 N -0.50 -14.86 10.25 -302.50 -3.10 -17.96 16 15 C 0.19 5.45 7.79 137.26 1.07 6.52 16 16 C -0.07 -1.67 5.88 -20.00 -0.12 -1.79 16 17 C -0.04 -0.62 9.69 22.47 0.22 -0.41 16 18 C -0.11 -1.21 9.81 22.26 0.22 -0.99 16 19 C 0.01 0.12 6.32 22.36 0.14 0.26 16 20 Cl -0.04 -0.41 28.95 -2.72 -0.08 -0.49 16 21 C -0.15 -2.32 9.79 22.31 0.22 -2.10 16 22 C 0.14 3.03 7.28 22.60 0.16 3.20 16 23 F -0.12 -3.37 15.80 44.97 0.71 -2.66 16 24 N -0.38 -10.52 11.86 -59.11 -0.70 -11.22 16 25 O 0.08 2.15 11.29 74.63 0.84 2.99 16 26 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 27 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.16 2.16 7.87 -2.91 -0.02 2.14 16 36 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -70.10 347.51 5.02 -65.08 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: 1.10 Total: -0.04 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 3.93 Total: -24.56 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -3.52 Total: -86.40 kcal Atomic # 8 Polarization: 2.15 SS G_CDS: 0.84 Total: 2.99 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.71 Total: -2.66 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -70.10 5.02 -65.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590277663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.895 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds