Wall clock time and date at job start Tue Mar 31 2020 14:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48504 * 109.47066 * 270.00190 * 3 2 1 5 5 H 1.48494 * 109.47244 * 30.00134 * 3 2 1 6 6 H 1.48499 * 109.47118 * 150.00233 * 3 2 1 7 7 C 1.37877 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00233 * 359.97438 * 7 2 1 10 10 O 1.42911 * 110.63684 * 56.86310 * 9 7 2 11 11 C 1.55151 * 110.71887 * 180.02562 * 9 7 2 12 12 C 1.54916 * 101.58157 * 154.04725 * 11 9 7 13 13 N 1.47428 * 104.82787 * 322.99261 * 12 11 9 14 14 C 1.34778 * 125.64723 * 204.09427 * 13 12 11 15 15 O 1.21554 * 119.99654 * 5.83958 * 14 13 12 16 16 C 1.47848 * 120.00028 * 185.84058 * 14 13 12 17 17 C 1.39570 * 120.13155 * 352.73485 * 16 14 13 18 18 C 1.38170 * 119.81995 * 179.69816 * 17 16 14 19 19 F 1.35106 * 119.95310 * 180.30096 * 18 17 16 20 20 C 1.38587 * 120.09833 * 0.60700 * 18 17 16 21 21 C 1.38304 * 120.26502 * 359.67138 * 20 18 17 22 22 N 1.48012 * 119.91279 * 180.02562 * 21 20 18 23 23 O 1.21799 * 119.99981 * 179.97438 * 22 21 20 24 24 O 1.21804 * 120.00367 * 359.97411 * 22 21 20 25 25 C 1.37981 * 120.17244 * 0.02624 * 21 20 18 26 26 C 1.47016 * 108.70625 * 24.35413 * 13 12 11 27 27 H 0.96997 * 119.99688 * 359.97438 * 1 2 3 28 28 H 0.96703 * 113.99766 * 303.13797 * 10 9 7 29 29 H 1.08999 * 111.00776 * 35.97279 * 11 9 7 30 30 H 1.09005 * 111.04238 * 272.13102 * 11 9 7 31 31 H 1.08997 * 110.36605 * 204.15593 * 12 11 9 32 32 H 1.08999 * 110.36712 * 81.82801 * 12 11 9 33 33 H 1.07995 * 120.08651 * 359.97438 * 17 16 14 34 34 H 1.08001 * 119.87520 * 179.69709 * 20 18 17 35 35 H 1.08005 * 120.04775 * 179.97438 * 25 21 20 36 36 H 1.08998 * 109.88219 * 118.13274 * 26 13 12 37 37 H 1.09004 * 109.88648 * 239.30310 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1201 11 6 2.2333 -3.7001 -0.0005 12 6 1.3740 -4.8048 0.6636 13 7 0.5904 -4.1032 1.6967 14 6 0.0653 -4.6673 2.8024 15 8 0.3111 -5.8277 3.0679 16 6 -0.8095 -3.8746 3.6925 17 6 -0.9726 -2.5054 3.4765 18 6 -1.7967 -1.7719 4.3084 19 9 -1.9613 -0.4475 4.0981 20 6 -2.4497 -2.3916 5.3621 21 6 -2.2863 -3.7470 5.5831 22 7 -2.9879 -4.4009 6.7105 23 8 -2.8455 -5.5946 6.9063 24 8 -3.7077 -3.7454 7.4424 25 6 -1.4709 -4.4913 4.7554 26 6 0.4712 -2.6877 1.3179 27 1 -0.4849 0.8400 0.0004 28 1 -0.2690 -1.8414 -1.1660 29 1 3.1182 -3.4812 0.5972 30 1 2.5104 -3.9791 -1.0172 31 1 2.0138 -5.5599 1.1203 32 1 0.7105 -5.2620 -0.0704 33 1 -0.4596 -2.0214 2.6587 34 1 -3.0891 -1.8139 6.0131 35 1 -1.3444 -5.5496 4.9301 36 1 -0.5777 -2.4305 1.1705 37 1 0.9038 -2.0581 2.0955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843244.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:52 Heat of formation + Delta-G solvation = -77.155968 kcal Electronic energy + Delta-G solvation = -27762.103448 eV Core-core repulsion = 23423.518059 eV Total energy + Delta-G solvation = -4338.585389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.22390 -42.36876 -40.54871 -38.69198 -37.51919 -36.73537 -34.62221 -32.83870 -32.39604 -31.27772 -30.27195 -28.42694 -26.78431 -25.75567 -24.59247 -22.79962 -22.37007 -20.49801 -19.99233 -19.00772 -18.82929 -17.73039 -17.56845 -17.17365 -16.77822 -16.60468 -16.01348 -15.89213 -15.62987 -15.19074 -15.09485 -14.49537 -13.88015 -13.50133 -13.29796 -13.19634 -12.94722 -12.66543 -12.51026 -12.10785 -11.86725 -11.79705 -11.72588 -11.42459 -11.29548 -11.19579 -10.89886 -10.82872 -10.64784 -10.44808 -10.06665 -9.91162 -9.57912 -9.41932 -8.92076 -8.58313 -8.33664 -6.57447 -4.66384 -0.45058 0.24757 1.04426 1.09319 2.43684 3.02296 3.06381 3.14143 3.16019 3.32121 3.61324 4.02751 4.08721 4.23839 4.38266 4.55706 4.68990 4.74527 5.03036 5.27965 5.34438 5.40646 5.47666 5.56756 5.63601 5.74831 5.93419 5.94956 6.09575 6.20780 6.22818 6.49260 6.54827 6.73848 7.01416 7.45718 7.47279 7.63133 7.77571 8.15683 8.39548 9.04255 9.17007 10.50282 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.004353 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.909502 B = 6430.314853 C = 7957.810594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.251 3.749 10 O -0.582 6.582 11 C -0.119 4.119 12 C 0.109 3.891 13 N -0.598 5.598 14 C 0.568 3.432 15 O -0.543 6.543 16 C -0.093 4.093 17 C -0.106 4.106 18 C 0.108 3.892 19 F -0.113 7.113 20 C -0.081 4.081 21 C -0.031 4.031 22 N 0.031 4.969 23 O -0.149 6.149 24 O -0.157 6.157 25 C -0.012 4.012 26 C 0.068 3.932 27 H 0.274 0.726 28 H 0.387 0.613 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.209 0.791 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.079 0.921 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 -2.442 6.061 7.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.089 0.911 9 C 0.210 3.790 10 O -0.392 6.392 11 C -0.157 4.157 12 C -0.013 4.013 13 N -0.329 5.329 14 C 0.356 3.644 15 O -0.422 6.422 16 C -0.097 4.097 17 C -0.124 4.124 18 C 0.087 3.913 19 F -0.091 7.091 20 C -0.101 4.101 21 C -0.114 4.114 22 N 0.553 4.447 23 O -0.367 6.367 24 O -0.373 6.373 25 C -0.033 4.033 26 C -0.053 4.053 27 H 0.084 0.916 28 H 0.239 0.761 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.225 0.775 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.097 0.903 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.138 -3.118 5.566 6.728 hybrid contribution -0.335 1.743 0.506 1.846 sum -2.472 -1.375 6.072 6.699 Atomic orbital electron populations 1.69525 1.06019 1.28477 1.50023 1.25065 0.95108 0.99894 0.93041 0.86375 0.79838 0.82057 0.78633 1.20166 1.20818 1.19593 1.21574 0.94030 0.89823 1.52262 0.91138 1.19478 0.85788 0.92594 0.81120 1.86133 1.51349 1.53355 1.48400 1.22813 0.97620 0.94480 1.00786 1.22334 0.94018 0.95720 0.89197 1.48621 1.51203 1.12244 1.20812 1.17410 0.80413 0.86121 0.80496 1.90780 1.61486 1.16777 1.73204 1.19739 0.99945 0.93180 0.96829 1.23906 0.94561 0.94192 0.99776 1.17141 0.98955 0.79337 0.95822 1.91640 1.93922 1.29451 1.94092 1.21051 0.98891 0.92801 0.97393 1.20509 1.04088 0.93181 0.93606 1.43420 0.99335 1.01025 1.00959 1.94575 1.67834 0.97571 1.76681 1.94543 1.34601 1.64703 1.43414 1.21102 0.89839 1.02425 0.89887 1.23727 1.01961 0.78268 1.01357 0.91555 0.76105 0.90244 0.89952 0.90924 0.91148 0.77526 0.81517 0.81180 0.90280 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -20.35 10.97 55.43 0.61 -19.74 16 2 C 0.07 1.62 5.28 -17.82 -0.09 1.53 16 3 Si 0.90 18.23 29.54 -169.99 -5.02 13.21 16 4 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 7 C -0.54 -12.21 8.12 -34.44 -0.28 -12.49 16 8 H 0.07 1.60 7.76 -52.49 -0.41 1.19 16 9 C 0.25 5.18 0.86 -89.94 -0.08 5.11 16 10 O -0.58 -12.90 13.07 -35.23 -0.46 -13.36 16 11 C -0.12 -2.11 6.23 -24.58 -0.15 -2.26 16 12 C 0.11 1.83 6.93 -2.52 -0.02 1.81 16 13 N -0.60 -10.51 3.33 -175.57 -0.58 -11.09 16 14 C 0.57 9.83 7.81 -12.33 -0.10 9.73 16 15 O -0.54 -10.44 16.60 5.32 0.09 -10.35 16 16 C -0.09 -1.38 5.87 -104.98 -0.62 -2.00 16 17 C -0.11 -1.54 8.59 -39.11 -0.34 -1.87 16 18 C 0.11 1.42 7.29 -39.48 -0.29 1.13 16 19 F -0.11 -1.58 17.26 2.25 0.04 -1.54 16 20 C -0.08 -0.97 9.53 -39.43 -0.38 -1.34 16 21 C -0.03 -0.40 6.84 -80.02 -0.55 -0.95 16 22 N 0.03 0.44 4.45 33.93 0.15 0.59 16 23 O -0.15 -2.19 18.44 -29.46 -0.54 -2.73 16 24 O -0.16 -2.20 18.44 -29.46 -0.54 -2.75 16 25 C -0.01 -0.17 9.10 -39.18 -0.36 -0.53 16 26 C 0.07 1.27 3.54 -3.06 -0.01 1.26 16 27 H 0.27 6.03 8.31 -40.82 -0.34 5.69 16 28 H 0.39 8.75 6.98 45.56 0.32 9.07 16 29 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.14 7.98 -51.93 -0.41 0.73 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.21 3.31 2.75 -57.61 -0.16 3.15 16 34 H 0.17 1.64 7.60 -52.49 -0.40 1.25 16 35 H 0.17 2.29 7.21 -52.48 -0.38 1.91 16 36 H 0.08 1.51 6.69 -51.93 -0.35 1.17 16 37 H 0.08 1.52 6.39 -51.93 -0.33 1.19 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -24.27 325.39 -7.13 -31.40 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -2.52 Total: 12.33 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.25 Total: -0.87 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 0.18 Total: -30.24 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.46 Total: -29.19 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -24.27 -7.13 -31.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843244.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.758 kcal (2) G-P(sol) polarization free energy of solvation -24.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds