Wall clock time and date at job start Tue Mar 31 2020 14:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48504 * 109.47066 * 270.00190 * 3 2 1 5 5 H 1.48494 * 109.47244 * 30.00134 * 3 2 1 6 6 H 1.48499 * 109.47118 * 150.00233 * 3 2 1 7 7 C 1.37877 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00233 * 359.97438 * 7 2 1 10 10 O 1.42911 * 110.63684 * 56.86310 * 9 7 2 11 11 C 1.55151 * 110.71887 * 180.02562 * 9 7 2 12 12 C 1.54916 * 101.58157 * 154.04725 * 11 9 7 13 13 N 1.47428 * 104.82787 * 322.99261 * 12 11 9 14 14 C 1.34778 * 125.64723 * 204.09427 * 13 12 11 15 15 O 1.21554 * 119.99654 * 5.83958 * 14 13 12 16 16 C 1.47848 * 120.00028 * 185.84058 * 14 13 12 17 17 C 1.39570 * 120.13155 * 352.73485 * 16 14 13 18 18 C 1.38170 * 119.81995 * 179.69816 * 17 16 14 19 19 F 1.35106 * 119.95310 * 180.30096 * 18 17 16 20 20 C 1.38587 * 120.09833 * 0.60700 * 18 17 16 21 21 C 1.38304 * 120.26502 * 359.67138 * 20 18 17 22 22 N 1.48012 * 119.91279 * 180.02562 * 21 20 18 23 23 O 1.21799 * 119.99981 * 179.97438 * 22 21 20 24 24 O 1.21804 * 120.00367 * 359.97411 * 22 21 20 25 25 C 1.37981 * 120.17244 * 0.02624 * 21 20 18 26 26 C 1.47016 * 108.70625 * 24.35413 * 13 12 11 27 27 H 0.96997 * 119.99688 * 359.97438 * 1 2 3 28 28 H 0.96703 * 113.99766 * 303.13797 * 10 9 7 29 29 H 1.08999 * 111.00776 * 35.97279 * 11 9 7 30 30 H 1.09005 * 111.04238 * 272.13102 * 11 9 7 31 31 H 1.08997 * 110.36605 * 204.15593 * 12 11 9 32 32 H 1.08999 * 110.36712 * 81.82801 * 12 11 9 33 33 H 1.07995 * 120.08651 * 359.97438 * 17 16 14 34 34 H 1.08001 * 119.87520 * 179.69709 * 20 18 17 35 35 H 1.08005 * 120.04775 * 179.97438 * 25 21 20 36 36 H 1.08998 * 109.88219 * 118.13274 * 26 13 12 37 37 H 1.09004 * 109.88648 * 239.30310 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1201 11 6 2.2333 -3.7001 -0.0005 12 6 1.3740 -4.8048 0.6636 13 7 0.5904 -4.1032 1.6967 14 6 0.0653 -4.6673 2.8024 15 8 0.3111 -5.8277 3.0679 16 6 -0.8095 -3.8746 3.6925 17 6 -0.9726 -2.5054 3.4765 18 6 -1.7967 -1.7719 4.3084 19 9 -1.9613 -0.4475 4.0981 20 6 -2.4497 -2.3916 5.3621 21 6 -2.2863 -3.7470 5.5831 22 7 -2.9879 -4.4009 6.7105 23 8 -2.8455 -5.5946 6.9063 24 8 -3.7077 -3.7454 7.4424 25 6 -1.4709 -4.4913 4.7554 26 6 0.4712 -2.6877 1.3179 27 1 -0.4849 0.8400 0.0004 28 1 -0.2690 -1.8414 -1.1660 29 1 3.1182 -3.4812 0.5972 30 1 2.5104 -3.9791 -1.0172 31 1 2.0138 -5.5599 1.1203 32 1 0.7105 -5.2620 -0.0704 33 1 -0.4596 -2.0214 2.6587 34 1 -3.0891 -1.8139 6.0131 35 1 -1.3444 -5.5496 4.9301 36 1 -0.5777 -2.4305 1.1705 37 1 0.9038 -2.0581 2.0955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843244.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:51 Heat of formation + Delta-G solvation = -90.246520 kcal Electronic energy + Delta-G solvation = -27762.671097 eV Core-core repulsion = 23423.518059 eV Total energy + Delta-G solvation = -4339.153038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.31820 -43.47215 -41.86224 -39.96196 -38.98574 -37.84713 -36.20111 -34.24142 -33.93292 -32.40002 -31.68579 -29.91251 -27.98038 -27.25764 -25.94335 -23.94319 -23.67846 -21.81267 -21.43144 -20.25643 -19.96647 -19.15980 -18.82371 -18.49573 -17.96632 -17.75883 -17.30273 -17.13606 -16.89628 -16.68591 -16.53036 -16.02273 -15.16873 -14.93533 -14.83242 -14.57762 -14.20394 -13.86821 -13.66591 -13.56479 -13.46949 -13.23499 -12.84644 -12.82541 -12.57511 -12.41598 -12.37909 -12.30960 -12.23794 -12.07794 -11.48083 -11.17905 -11.05124 -10.63068 -10.51290 -10.24195 -9.76898 -8.28919 -6.42565 -1.55484 -0.86646 -0.07656 -0.00652 1.23496 1.43114 1.49685 1.55311 1.72066 2.07223 2.38519 2.51519 2.85625 2.98660 3.15898 3.30811 3.40587 3.58042 3.80263 3.92365 3.99915 4.09633 4.19074 4.27914 4.40049 4.47581 4.53225 4.67624 4.75561 4.83053 5.03372 5.10638 5.15080 5.24830 5.43252 5.74262 6.00494 6.31203 6.32727 6.62694 6.78991 7.29903 7.41687 8.77068 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.004353 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.909502 B = 6430.314853 C = 7957.810594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.041 3.959 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.557 4.557 8 H 0.065 0.935 9 C 0.234 3.766 10 O -0.591 6.591 11 C -0.114 4.114 12 C 0.110 3.890 13 N -0.601 5.601 14 C 0.569 3.431 15 O -0.564 6.564 16 C -0.101 4.101 17 C -0.104 4.104 18 C 0.109 3.891 19 F -0.116 7.116 20 C -0.056 4.056 21 C -0.030 4.030 22 N 0.032 4.968 23 O -0.171 6.171 24 O -0.143 6.143 25 C -0.004 4.004 26 C 0.087 3.913 27 H 0.275 0.725 28 H 0.382 0.618 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.193 0.807 34 H 0.195 0.805 35 H 0.172 0.828 36 H 0.072 0.928 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -1.966 7.077 7.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.160 4.160 3 Si 0.778 3.222 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.595 4.595 8 H 0.083 0.917 9 C 0.194 3.806 10 O -0.400 6.400 11 C -0.151 4.151 12 C -0.011 4.011 13 N -0.331 5.331 14 C 0.358 3.642 15 O -0.445 6.445 16 C -0.105 4.105 17 C -0.122 4.122 18 C 0.088 3.912 19 F -0.094 7.094 20 C -0.075 4.075 21 C -0.113 4.113 22 N 0.553 4.447 23 O -0.383 6.383 24 O -0.364 6.364 25 C -0.024 4.024 26 C -0.035 4.035 27 H 0.084 0.916 28 H 0.233 0.767 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.209 0.791 34 H 0.212 0.788 35 H 0.189 0.811 36 H 0.090 0.910 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.501 -2.694 6.571 7.530 hybrid contribution -0.250 1.638 0.207 1.670 sum -2.751 -1.056 6.779 7.391 Atomic orbital electron populations 1.69579 1.06487 1.28810 1.50022 1.25551 0.95735 1.01797 0.92966 0.85643 0.78917 0.79565 0.78078 1.20673 1.20754 1.19581 1.21784 0.94008 0.91014 1.52659 0.91706 1.19705 0.86324 0.93108 0.81495 1.86127 1.51455 1.53069 1.49368 1.22789 0.97351 0.93554 1.01446 1.22353 0.94019 0.95596 0.89132 1.48639 1.51484 1.11856 1.21165 1.17686 0.80191 0.86000 0.80361 1.90764 1.62358 1.17716 1.73698 1.19435 1.00676 0.93111 0.97283 1.23641 0.94860 0.94020 0.99684 1.17026 0.99019 0.79097 0.96017 1.91638 1.93950 1.29687 1.94166 1.21223 0.97589 0.92252 0.96470 1.20453 1.04050 0.93469 0.93341 1.43476 0.99275 1.00968 1.01017 1.94593 1.68615 0.97866 1.77223 1.94534 1.34077 1.64534 1.43206 1.21050 0.89436 1.02527 0.89391 1.23392 1.01114 0.78789 1.00230 0.91552 0.76714 0.89563 0.89400 0.89626 0.91117 0.79056 0.78812 0.81104 0.90979 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -40.88 10.97 21.45 0.24 -40.64 16 2 C 0.04 1.85 5.28 84.65 0.45 2.29 16 3 Si 0.95 36.96 29.54 68.60 2.03 38.98 16 4 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 7 C -0.56 -25.13 8.12 25.60 0.21 -24.93 16 8 H 0.06 2.93 7.76 -2.91 -0.02 2.91 16 9 C 0.23 9.64 0.86 -10.35 -0.01 9.63 16 10 O -0.59 -26.26 13.07 -148.98 -1.95 -28.20 16 11 C -0.11 -3.95 6.23 31.99 0.20 -3.75 16 12 C 0.11 3.63 6.93 86.86 0.60 4.23 16 13 N -0.60 -20.85 3.33 -827.67 -2.75 -23.60 16 14 C 0.57 19.35 7.81 86.79 0.68 20.03 16 15 O -0.56 -21.36 16.60 -3.88 -0.06 -21.42 16 16 C -0.10 -2.92 5.87 -20.09 -0.12 -3.03 16 17 C -0.10 -2.90 8.59 22.58 0.19 -2.70 16 18 C 0.11 2.65 7.29 22.34 0.16 2.81 16 19 F -0.12 -3.04 17.26 44.97 0.78 -2.27 16 20 C -0.06 -1.16 9.53 22.37 0.21 -0.95 16 21 C -0.03 -0.72 6.84 36.33 0.25 -0.47 16 22 N 0.03 0.83 4.45 -46.57 -0.21 0.63 16 23 O -0.17 -4.79 18.44 18.89 0.35 -4.44 16 24 O -0.14 -3.62 18.44 18.88 0.35 -3.28 16 25 C 0.00 -0.10 9.10 22.53 0.20 0.10 16 26 C 0.09 3.22 3.54 86.73 0.31 3.53 16 27 H 0.27 11.95 8.31 -92.71 -0.77 11.18 16 28 H 0.38 17.45 6.98 -74.05 -0.52 16.93 16 29 H 0.09 2.86 8.03 -2.39 -0.02 2.84 16 30 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 31 H 0.09 2.59 7.98 -2.39 -0.02 2.57 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.19 6.08 2.75 -7.73 -0.02 6.06 16 34 H 0.19 3.04 7.60 -2.91 -0.02 3.01 16 35 H 0.17 4.44 7.21 -2.91 -0.02 4.42 16 36 H 0.07 2.78 6.69 -2.39 -0.02 2.76 16 37 H 0.08 2.92 6.39 -2.38 -0.02 2.90 16 Total: -1.00 -49.64 325.39 2.74 -46.90 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.64 Total: 30.54 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 3.34 Total: 6.79 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -2.72 Total: -63.62 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -1.32 Total: -57.34 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.98 kcal Total: -49.64 2.74 -46.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843244.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.343 kcal (2) G-P(sol) polarization free energy of solvation -49.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds