Wall clock time and date at job start Tue Mar 31 2020 14:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99568 * 2 1 4 4 H 1.48506 * 109.46730 * 239.99512 * 3 2 1 5 5 H 1.48500 * 109.47479 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47060 * 119.99971 * 3 2 1 7 7 C 1.37873 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00058 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63852 * 298.30559 * 9 7 2 11 11 C 1.55442 * 110.85695 * 175.08584 * 9 7 2 12 12 C 1.54917 * 101.45080 * 206.06896 * 11 9 7 13 13 N 1.47429 * 104.92392 * 37.00712 * 12 11 9 14 14 C 1.34775 * 125.64934 * 155.83874 * 13 12 11 15 15 O 1.21553 * 119.99605 * 354.29352 * 14 13 12 16 16 C 1.47847 * 120.00365 * 174.29003 * 14 13 12 17 17 C 1.39575 * 120.12811 * 7.20535 * 16 14 13 18 18 C 1.38171 * 119.82074 * 180.02562 * 17 16 14 19 19 F 1.35105 * 119.95159 * 180.02562 * 18 17 16 20 20 C 1.38593 * 120.09643 * 0.02562 * 18 17 16 21 21 C 1.38303 * 120.26454 * 0.02562 * 20 18 17 22 22 N 1.48014 * 119.91016 * 179.97438 * 21 20 18 23 23 O 1.21800 * 120.00019 * 359.97438 * 22 21 20 24 24 O 1.21795 * 120.00054 * 179.97438 * 22 21 20 25 25 C 1.37980 * 120.17268 * 359.67214 * 21 20 18 26 26 C 1.47025 * 108.70238 * 335.81301 * 13 12 11 27 27 H 0.96994 * 120.00116 * 0.02562 * 1 2 3 28 28 H 0.96697 * 113.99815 * 61.68610 * 10 9 7 29 29 H 1.08997 * 111.11920 * 88.02006 * 11 9 7 30 30 H 1.09001 * 111.01555 * 324.07433 * 11 9 7 31 31 H 1.08993 * 110.36695 * 278.11753 * 12 11 9 32 32 H 1.09001 * 110.36808 * 155.89393 * 12 11 9 33 33 H 1.07997 * 120.08797 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.86397 * 179.97438 * 20 18 17 35 35 H 1.08000 * 120.04769 * 180.32340 * 25 21 20 36 36 H 1.09006 * 109.87755 * 120.47820 * 26 13 12 37 37 H 1.09004 * 109.88277 * 241.48888 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4496 -2.6181 1.1777 11 6 2.2278 -3.7021 -0.1233 12 6 1.3156 -4.7735 -0.7712 13 7 0.4620 -4.0263 -1.7128 14 6 -0.1443 -4.5405 -2.8011 15 8 0.0748 -5.6892 -3.1330 16 6 -1.0760 -3.7077 -3.5912 17 6 -1.2159 -2.3488 -3.3047 18 6 -2.0888 -1.5765 -4.0468 19 9 -2.2259 -0.2608 -3.7722 20 6 -2.8239 -2.1495 -5.0725 21 6 -2.6890 -3.4958 -5.3589 22 7 -3.4783 -4.0998 -6.4557 23 8 -4.2457 -3.4114 -7.1043 24 8 -3.3604 -5.2851 -6.7096 25 6 -1.8159 -4.2760 -4.6289 26 6 0.3811 -2.6274 -1.2676 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2284 -1.9339 1.2625 29 1 2.5767 -4.0271 0.8569 30 1 3.0674 -3.4584 -0.7742 31 1 0.7053 -5.2618 -0.0115 32 1 1.9158 -5.5098 -1.3057 33 1 -0.6440 -1.9025 -2.5047 34 1 -3.5053 -1.5424 -5.6499 35 1 -1.7083 -5.3260 -4.8577 36 1 0.7625 -1.9678 -2.0471 37 1 -0.6531 -2.3706 -1.0380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:55 Heat of formation + Delta-G solvation = -77.102737 kcal Electronic energy + Delta-G solvation = -27798.254206 eV Core-core repulsion = 23459.671125 eV Total energy + Delta-G solvation = -4338.583081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.20263 -42.36203 -40.54063 -38.68350 -37.51625 -36.72923 -34.59895 -32.83416 -32.45410 -31.26422 -30.26075 -28.39080 -26.77449 -25.74744 -24.58383 -22.78646 -22.36579 -20.49359 -20.00452 -19.00024 -18.82092 -17.72353 -17.53067 -17.15329 -16.77682 -16.59383 -16.00020 -15.89479 -15.61761 -15.18661 -15.07311 -14.51727 -13.87289 -13.49988 -13.30899 -13.17466 -12.92737 -12.65897 -12.50272 -12.08590 -11.88233 -11.80064 -11.71882 -11.41481 -11.28912 -11.16548 -10.89977 -10.85412 -10.65840 -10.46242 -10.06293 -9.89754 -9.54289 -9.40504 -8.92792 -8.58304 -8.33137 -6.56407 -4.64999 -0.43884 0.25930 1.05632 1.10240 2.44801 3.03630 3.07488 3.13782 3.16246 3.32999 3.62973 4.03747 4.09779 4.25127 4.39932 4.57395 4.70436 4.75792 5.04135 5.29212 5.33805 5.40847 5.47327 5.57137 5.63670 5.75645 5.93982 5.96428 6.09390 6.22245 6.25009 6.49056 6.54801 6.71850 7.00398 7.46563 7.47185 7.64593 7.78932 8.16361 8.40854 9.02286 9.11978 10.51543 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.004412 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.189589 B = 6344.927961 C = 7889.612998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.251 3.749 10 O -0.580 6.580 11 C -0.119 4.119 12 C 0.109 3.891 13 N -0.599 5.599 14 C 0.568 3.432 15 O -0.543 6.543 16 C -0.094 4.094 17 C -0.106 4.106 18 C 0.108 3.892 19 F -0.113 7.113 20 C -0.081 4.081 21 C -0.031 4.031 22 N 0.032 4.968 23 O -0.157 6.157 24 O -0.149 6.149 25 C -0.013 4.013 26 C 0.071 3.929 27 H 0.274 0.726 28 H 0.383 0.617 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.211 0.789 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.082 0.918 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 -2.249 -5.693 6.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.088 0.912 9 C 0.210 3.790 10 O -0.389 6.389 11 C -0.157 4.157 12 C -0.013 4.013 13 N -0.330 5.330 14 C 0.356 3.644 15 O -0.423 6.423 16 C -0.098 4.098 17 C -0.124 4.124 18 C 0.088 3.912 19 F -0.091 7.091 20 C -0.102 4.102 21 C -0.114 4.114 22 N 0.553 4.447 23 O -0.373 6.373 24 O -0.367 6.367 25 C -0.033 4.033 26 C -0.050 4.050 27 H 0.084 0.916 28 H 0.233 0.767 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.226 0.774 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.099 0.901 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.556 -2.920 -5.263 6.538 hybrid contribution -0.382 1.747 -0.453 1.844 sum -2.938 -1.173 -5.715 6.532 Atomic orbital electron populations 1.69624 1.05978 1.28542 1.49836 1.25048 0.95120 0.99831 0.93077 0.86440 0.79629 0.81807 0.79062 1.19939 1.20910 1.19822 1.21511 0.93970 0.89816 1.52380 0.91243 1.19550 0.86319 0.92502 0.80631 1.86168 1.51756 1.56504 1.44460 1.22849 0.97336 0.94762 1.00703 1.22326 0.92648 0.95153 0.91176 1.48650 1.47220 1.12954 1.24172 1.17408 0.80632 0.86162 0.80220 1.90779 1.64254 1.17822 1.69428 1.19738 0.99337 0.93422 0.97259 1.23945 0.95341 0.93632 0.99497 1.17144 0.98305 0.79663 0.96111 1.91640 1.94466 1.30296 1.92670 1.21052 0.99081 0.93234 0.96796 1.20506 1.01808 0.93816 0.95289 1.43419 0.99687 1.00924 1.00699 1.94542 1.32645 1.61444 1.48650 1.94573 1.71082 0.98623 1.72406 1.21097 0.89622 1.02121 0.90430 1.23693 1.02213 0.78691 1.00421 0.91590 0.76701 0.89970 0.90187 0.91169 0.90938 0.77358 0.81537 0.81202 0.90061 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -20.20 10.96 55.43 0.61 -19.59 16 2 C 0.07 1.63 5.28 -17.82 -0.09 1.54 16 3 Si 0.90 18.26 29.54 -169.99 -5.02 13.24 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.54 -12.20 8.13 -34.44 -0.28 -12.48 16 8 H 0.07 1.58 7.78 -52.49 -0.41 1.17 16 9 C 0.25 5.15 0.85 -89.78 -0.08 5.07 16 10 O -0.58 -12.68 13.08 -35.23 -0.46 -13.14 16 11 C -0.12 -2.09 6.26 -24.42 -0.15 -2.25 16 12 C 0.11 1.82 6.92 -2.52 -0.02 1.81 16 13 N -0.60 -10.54 3.33 -175.63 -0.58 -11.12 16 14 C 0.57 9.86 7.81 -12.33 -0.10 9.76 16 15 O -0.54 -10.47 16.60 5.32 0.09 -10.38 16 16 C -0.09 -1.40 5.87 -104.98 -0.62 -2.02 16 17 C -0.11 -1.55 8.59 -39.11 -0.34 -1.89 16 18 C 0.11 1.44 7.29 -39.47 -0.29 1.15 16 19 F -0.11 -1.59 17.26 2.25 0.04 -1.56 16 20 C -0.08 -0.98 9.53 -39.43 -0.38 -1.35 16 21 C -0.03 -0.41 6.84 -80.02 -0.55 -0.96 16 22 N 0.03 0.45 4.45 33.93 0.15 0.60 16 23 O -0.16 -2.22 18.44 -29.46 -0.54 -2.76 16 24 O -0.15 -2.21 18.44 -29.46 -0.54 -2.75 16 25 C -0.01 -0.17 9.10 -39.19 -0.36 -0.53 16 26 C 0.07 1.33 3.24 -3.07 -0.01 1.32 16 27 H 0.27 6.02 8.31 -40.82 -0.34 5.68 16 28 H 0.38 8.44 7.45 45.56 0.34 8.78 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.08 1.35 8.05 -51.93 -0.42 0.94 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.14 7.98 -51.93 -0.41 0.72 16 33 H 0.21 3.39 2.75 -57.68 -0.16 3.23 16 34 H 0.17 1.66 7.60 -52.49 -0.40 1.26 16 35 H 0.17 2.30 7.21 -52.49 -0.38 1.92 16 36 H 0.08 1.55 6.41 -51.93 -0.33 1.22 16 37 H 0.08 1.54 6.52 -51.93 -0.34 1.20 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -24.17 325.45 -7.10 -31.27 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -2.49 Total: 12.11 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -3.25 Total: -0.82 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.17 Total: -30.11 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.46 Total: -29.03 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -24.17 -7.10 -31.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.837 kcal (2) G-P(sol) polarization free energy of solvation -24.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds