Wall clock time and date at job start Tue Mar 31 2020 14:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99568 * 2 1 4 4 H 1.48506 * 109.46730 * 239.99512 * 3 2 1 5 5 H 1.48500 * 109.47479 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47060 * 119.99971 * 3 2 1 7 7 C 1.37873 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00058 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63852 * 298.30559 * 9 7 2 11 11 C 1.55442 * 110.85695 * 175.08584 * 9 7 2 12 12 C 1.54917 * 101.45080 * 206.06896 * 11 9 7 13 13 N 1.47429 * 104.92392 * 37.00712 * 12 11 9 14 14 C 1.34775 * 125.64934 * 155.83874 * 13 12 11 15 15 O 1.21553 * 119.99605 * 354.29352 * 14 13 12 16 16 C 1.47847 * 120.00365 * 174.29003 * 14 13 12 17 17 C 1.39575 * 120.12811 * 7.20535 * 16 14 13 18 18 C 1.38171 * 119.82074 * 180.02562 * 17 16 14 19 19 F 1.35105 * 119.95159 * 180.02562 * 18 17 16 20 20 C 1.38593 * 120.09643 * 0.02562 * 18 17 16 21 21 C 1.38303 * 120.26454 * 0.02562 * 20 18 17 22 22 N 1.48014 * 119.91016 * 179.97438 * 21 20 18 23 23 O 1.21800 * 120.00019 * 359.97438 * 22 21 20 24 24 O 1.21795 * 120.00054 * 179.97438 * 22 21 20 25 25 C 1.37980 * 120.17268 * 359.67214 * 21 20 18 26 26 C 1.47025 * 108.70238 * 335.81301 * 13 12 11 27 27 H 0.96994 * 120.00116 * 0.02562 * 1 2 3 28 28 H 0.96697 * 113.99815 * 61.68610 * 10 9 7 29 29 H 1.08997 * 111.11920 * 88.02006 * 11 9 7 30 30 H 1.09001 * 111.01555 * 324.07433 * 11 9 7 31 31 H 1.08993 * 110.36695 * 278.11753 * 12 11 9 32 32 H 1.09001 * 110.36808 * 155.89393 * 12 11 9 33 33 H 1.07997 * 120.08797 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.86397 * 179.97438 * 20 18 17 35 35 H 1.08000 * 120.04769 * 180.32340 * 25 21 20 36 36 H 1.09006 * 109.87755 * 120.47820 * 26 13 12 37 37 H 1.09004 * 109.88277 * 241.48888 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4496 -2.6181 1.1777 11 6 2.2278 -3.7021 -0.1233 12 6 1.3156 -4.7735 -0.7712 13 7 0.4620 -4.0263 -1.7128 14 6 -0.1443 -4.5405 -2.8011 15 8 0.0748 -5.6892 -3.1330 16 6 -1.0760 -3.7077 -3.5912 17 6 -1.2159 -2.3488 -3.3047 18 6 -2.0888 -1.5765 -4.0468 19 9 -2.2259 -0.2608 -3.7722 20 6 -2.8239 -2.1495 -5.0725 21 6 -2.6890 -3.4958 -5.3589 22 7 -3.4783 -4.0998 -6.4557 23 8 -4.2457 -3.4114 -7.1043 24 8 -3.3604 -5.2851 -6.7096 25 6 -1.8159 -4.2760 -4.6289 26 6 0.3811 -2.6274 -1.2676 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2284 -1.9339 1.2625 29 1 2.5767 -4.0271 0.8569 30 1 3.0674 -3.4584 -0.7742 31 1 0.7053 -5.2618 -0.0115 32 1 1.9158 -5.5098 -1.3057 33 1 -0.6440 -1.9025 -2.5047 34 1 -3.5053 -1.5424 -5.6499 35 1 -1.7083 -5.3260 -4.8577 36 1 0.7625 -1.9678 -2.0471 37 1 -0.6531 -2.3706 -1.0380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:54 Heat of formation + Delta-G solvation = -90.172535 kcal Electronic energy + Delta-G solvation = -27798.820955 eV Core-core repulsion = 23459.671125 eV Total energy + Delta-G solvation = -4339.149830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.30758 -43.47196 -41.85854 -39.95663 -38.98205 -37.84710 -36.16994 -34.28568 -33.94129 -32.39399 -31.67077 -29.87779 -27.97724 -27.24908 -25.93726 -23.93742 -23.67627 -21.81892 -21.43491 -20.25269 -19.96496 -19.10396 -18.82341 -18.49473 -17.98512 -17.75276 -17.30320 -17.12994 -16.88556 -16.64659 -16.53816 -16.04775 -15.18155 -14.92550 -14.81283 -14.57879 -14.19173 -13.86622 -13.66369 -13.54162 -13.48824 -13.22871 -12.84386 -12.79967 -12.57098 -12.41528 -12.39954 -12.33947 -12.23106 -12.08165 -11.47957 -11.13079 -11.04589 -10.63364 -10.50730 -10.23882 -9.76385 -8.27752 -6.40922 -1.55056 -0.86270 -0.07195 -0.00455 1.23900 1.44528 1.49744 1.53800 1.72573 2.07568 2.39170 2.52295 2.86222 3.00174 3.16393 3.31659 3.41539 3.58352 3.79757 3.90622 4.00413 4.10215 4.19596 4.27879 4.40741 4.48266 4.54438 4.68059 4.77353 4.83692 5.03259 5.10966 5.15391 5.23574 5.43733 5.73703 6.03025 6.31698 6.33007 6.63785 6.79423 7.29552 7.38068 8.78087 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.004412 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.189589 B = 6344.927961 C = 7889.612998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.043 3.957 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.558 4.558 8 H 0.063 0.937 9 C 0.234 3.766 10 O -0.588 6.588 11 C -0.113 4.113 12 C 0.110 3.890 13 N -0.602 5.602 14 C 0.569 3.431 15 O -0.564 6.564 16 C -0.102 4.102 17 C -0.104 4.104 18 C 0.109 3.891 19 F -0.116 7.116 20 C -0.056 4.056 21 C -0.030 4.030 22 N 0.032 4.968 23 O -0.143 6.143 24 O -0.171 6.171 25 C -0.004 4.004 26 C 0.090 3.910 27 H 0.274 0.726 28 H 0.378 0.622 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.194 0.806 34 H 0.195 0.805 35 H 0.172 0.828 36 H 0.076 0.924 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 -1.766 -6.624 7.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.159 4.159 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.596 4.596 8 H 0.081 0.919 9 C 0.194 3.806 10 O -0.396 6.396 11 C -0.151 4.151 12 C -0.011 4.011 13 N -0.333 5.333 14 C 0.358 3.642 15 O -0.446 6.446 16 C -0.106 4.106 17 C -0.122 4.122 18 C 0.088 3.912 19 F -0.094 7.094 20 C -0.076 4.076 21 C -0.113 4.113 22 N 0.553 4.447 23 O -0.364 6.364 24 O -0.383 6.383 25 C -0.024 4.024 26 C -0.031 4.031 27 H 0.084 0.916 28 H 0.228 0.772 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.211 0.789 34 H 0.212 0.788 35 H 0.189 0.811 36 H 0.093 0.907 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.042 -2.487 -6.186 7.328 hybrid contribution -0.259 1.642 -0.176 1.672 sum -3.301 -0.844 -6.362 7.217 Atomic orbital electron populations 1.69678 1.06367 1.28797 1.49738 1.25516 0.95753 1.01648 0.93010 0.85732 0.78614 0.79445 0.78609 1.19836 1.20902 1.20388 1.21725 0.93933 0.91061 1.52852 0.91888 1.19758 0.87004 0.92971 0.80873 1.86162 1.51771 1.56295 1.45366 1.22826 0.97086 0.93837 1.01341 1.22349 0.92566 0.95012 0.91206 1.48670 1.47521 1.12588 1.24477 1.17681 0.80501 0.86083 0.79973 1.90762 1.65082 1.18772 1.69947 1.19439 0.99900 0.93289 0.97926 1.23676 0.95632 0.93550 0.99377 1.17032 0.98368 0.79386 0.96372 1.91637 1.94492 1.30527 1.92765 1.21223 0.97989 0.92757 0.95590 1.20452 1.01699 0.94099 0.95088 1.43472 0.99651 1.00861 1.00738 1.94532 1.32199 1.61266 1.48370 1.94591 1.71778 0.98912 1.73013 1.21046 0.89246 1.02257 0.89867 1.23350 1.01321 0.79137 0.99338 0.91648 0.77191 0.89354 0.89581 0.91046 0.89679 0.78945 0.78828 0.81107 0.90663 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -40.42 10.96 21.45 0.24 -40.19 16 2 C 0.04 1.92 5.28 84.65 0.45 2.36 16 3 Si 0.95 37.01 29.54 68.60 2.03 39.04 16 4 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.56 -25.20 8.13 25.60 0.21 -24.99 16 8 H 0.06 2.86 7.78 -2.91 -0.02 2.84 16 9 C 0.23 9.60 0.85 -10.25 -0.01 9.59 16 10 O -0.59 -25.72 13.08 -148.98 -1.95 -27.67 16 11 C -0.11 -3.92 6.26 32.09 0.20 -3.72 16 12 C 0.11 3.61 6.92 86.86 0.60 4.21 16 13 N -0.60 -20.91 3.33 -827.84 -2.75 -23.66 16 14 C 0.57 19.42 7.81 86.79 0.68 20.10 16 15 O -0.56 -21.42 16.60 -3.88 -0.06 -21.48 16 16 C -0.10 -2.95 5.87 -20.09 -0.12 -3.07 16 17 C -0.10 -2.94 8.59 22.58 0.19 -2.75 16 18 C 0.11 2.69 7.29 22.34 0.16 2.85 16 19 F -0.12 -3.08 17.26 44.97 0.78 -2.30 16 20 C -0.06 -1.18 9.53 22.37 0.21 -0.97 16 21 C -0.03 -0.73 6.84 36.33 0.25 -0.48 16 22 N 0.03 0.84 4.45 -46.57 -0.21 0.63 16 23 O -0.14 -3.65 18.44 18.89 0.35 -3.30 16 24 O -0.17 -4.80 18.44 18.89 0.35 -4.45 16 25 C 0.00 -0.11 9.10 22.53 0.20 0.10 16 26 C 0.09 3.36 3.24 86.73 0.28 3.64 16 27 H 0.27 11.89 8.31 -92.71 -0.77 11.12 16 28 H 0.38 16.84 7.45 -74.06 -0.55 16.29 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.09 2.85 8.05 -2.39 -0.02 2.83 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.08 2.58 7.98 -2.39 -0.02 2.56 16 33 H 0.19 6.21 2.75 -7.79 -0.02 6.19 16 34 H 0.19 3.08 7.60 -2.91 -0.02 3.05 16 35 H 0.17 4.46 7.21 -2.91 -0.02 4.44 16 36 H 0.08 2.89 6.41 -2.38 -0.02 2.87 16 37 H 0.07 2.85 6.52 -2.39 -0.02 2.83 16 Total: -1.00 -49.37 325.45 2.68 -46.69 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.60 Total: 29.82 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 3.31 Total: 6.87 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -2.73 Total: -63.21 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -1.32 Total: -56.90 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Total: -49.37 2.68 -46.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.482 kcal (2) G-P(sol) polarization free energy of solvation -49.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds