Wall clock time and date at job start Tue Mar 31 2020 14:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99835 * 2 1 4 4 H 1.48503 * 109.47505 * 269.99805 * 3 2 1 5 5 H 1.48498 * 109.47254 * 30.00042 * 3 2 1 6 6 H 1.48501 * 109.47095 * 149.99835 * 3 2 1 7 7 C 1.37877 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99490 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00430 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.63836 * 59.29808 * 9 7 2 11 11 C 1.55153 * 110.72222 * 182.44025 * 9 7 2 12 12 C 1.55386 * 101.36595 * 153.94670 * 11 9 7 13 13 N 1.47426 * 104.87563 * 323.01982 * 12 11 9 14 14 C 1.34773 * 125.64850 * 204.16971 * 13 12 11 15 15 O 1.21567 * 120.00235 * 354.91111 * 14 13 12 16 16 C 1.47697 * 119.99808 * 174.90905 * 14 13 12 17 17 C 1.39658 * 120.16683 * 7.78056 * 16 14 13 18 18 C 1.37858 * 119.87484 * 180.02562 * 17 16 14 19 19 C 1.38460 * 120.22054 * 359.97438 * 18 17 16 20 20 N 1.48012 * 119.82764 * 180.02562 * 19 18 17 21 21 O 1.21803 * 120.00439 * 359.97438 * 20 19 18 22 22 O 1.21808 * 120.00065 * 180.02562 * 20 19 18 23 23 C 1.38202 * 120.33818 * 359.97438 * 19 18 17 24 24 C 1.38319 * 120.11760 * 359.76487 * 23 19 18 25 25 F 1.35103 * 120.11044 * 180.27135 * 24 23 19 26 26 C 1.47024 * 108.70121 * 24.12768 * 13 12 11 27 27 H 0.96993 * 119.99936 * 0.02562 * 1 2 3 28 28 H 0.96703 * 114.00072 * 300.69954 * 10 9 7 29 29 H 1.09001 * 111.00506 * 272.11659 * 11 9 7 30 30 H 1.08998 * 111.00313 * 35.96955 * 11 9 7 31 31 H 1.08994 * 110.34325 * 204.16764 * 12 11 9 32 32 H 1.09003 * 110.44089 * 81.91518 * 12 11 9 33 33 H 1.08000 * 120.06143 * 359.97303 * 17 16 14 34 34 H 1.08003 * 119.88453 * 180.02562 * 18 17 16 35 35 H 1.08002 * 119.93947 * 180.02562 * 23 19 18 36 36 H 1.08994 * 109.88363 * 239.52385 * 26 13 12 37 37 H 1.09002 * 109.87972 * 118.36126 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4084 -2.5943 -1.1497 11 6 2.2323 -3.6995 0.0630 12 6 1.3420 -4.7887 0.7229 13 7 0.5225 -4.0612 1.7092 14 6 -0.0441 -4.5976 2.8081 15 8 0.0247 -5.7953 3.0045 16 6 -0.7486 -3.7301 3.7739 17 6 -0.9715 -2.3841 3.4756 18 6 -1.6292 -1.5798 4.3816 19 6 -2.0698 -2.1021 5.5858 20 7 -2.7755 -1.2308 6.5520 21 8 -2.9670 -0.0574 6.2871 22 8 -3.1641 -1.6869 7.6125 23 6 -1.8550 -3.4331 5.8898 24 6 -1.2013 -4.2540 4.9886 25 9 -0.9962 -5.5564 5.2836 26 6 0.4266 -2.6536 1.2958 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2486 -1.8877 -1.2154 29 1 2.5463 -3.9998 -0.9367 30 1 3.0943 -3.4673 0.6883 31 1 1.9619 -5.5342 1.2208 32 1 0.7049 -5.2632 -0.0234 33 1 -0.6285 -1.9739 2.5372 34 1 -1.8020 -0.5389 4.1509 35 1 -2.2018 -3.8339 6.8308 36 1 0.8355 -2.0099 2.0745 37 1 -0.6147 -2.3932 1.1057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:57 Heat of formation + Delta-G solvation = -75.517903 kcal Electronic energy + Delta-G solvation = -27825.946160 eV Core-core repulsion = 23487.431803 eV Total energy + Delta-G solvation = -4338.514357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.18589 -42.35116 -40.44273 -38.70466 -37.53058 -36.73034 -34.57757 -32.79572 -32.42816 -31.25320 -30.28275 -28.29656 -27.22680 -25.59852 -23.77548 -23.36019 -22.27589 -20.32980 -19.75337 -19.51518 -18.88769 -17.71742 -17.65559 -17.17099 -16.71863 -16.54794 -16.09377 -15.94253 -15.45557 -15.12592 -14.67651 -14.20081 -14.00113 -13.37888 -13.30452 -13.26731 -13.07960 -12.80414 -12.55283 -12.01253 -11.86954 -11.79867 -11.70536 -11.39674 -11.28340 -11.18478 -10.86022 -10.84946 -10.62895 -10.46085 -10.00034 -9.87138 -9.55682 -9.38546 -8.92859 -8.57518 -8.31454 -6.57508 -4.65934 -0.59745 0.55281 0.93780 1.12111 2.50087 3.00958 3.06019 3.14599 3.16605 3.31524 3.64259 4.05368 4.07962 4.26433 4.31743 4.51334 4.70435 4.83635 5.09364 5.33294 5.39448 5.44537 5.55094 5.59254 5.63796 5.70828 5.93628 5.98482 6.11013 6.21327 6.26441 6.49076 6.55268 6.73226 7.00959 7.46229 7.46927 7.64098 7.78483 8.17431 8.40063 9.03638 9.13948 10.50427 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011246 B = 0.004961 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.184445 B = 5642.642429 C = 7743.782822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.250 3.750 10 O -0.581 6.581 11 C -0.118 4.118 12 C 0.110 3.890 13 N -0.597 5.597 14 C 0.559 3.441 15 O -0.535 6.535 16 C -0.111 4.111 17 C -0.090 4.090 18 C -0.068 4.068 19 C -0.003 4.003 20 N 0.027 4.973 21 O -0.146 6.146 22 O -0.158 6.158 23 C -0.111 4.111 24 C 0.158 3.842 25 F -0.100 7.100 26 C 0.070 3.930 27 H 0.274 0.726 28 H 0.385 0.615 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.210 0.790 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.083 0.917 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 -2.875 6.426 7.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.209 3.791 10 O -0.390 6.390 11 C -0.156 4.156 12 C -0.012 4.012 13 N -0.328 5.328 14 C 0.347 3.653 15 O -0.414 6.414 16 C -0.115 4.115 17 C -0.108 4.108 18 C -0.087 4.087 19 C -0.086 4.086 20 N 0.548 4.452 21 O -0.364 6.364 22 O -0.373 6.373 23 C -0.131 4.131 24 C 0.136 3.864 25 F -0.078 7.078 26 C -0.052 4.052 27 H 0.084 0.916 28 H 0.236 0.764 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.226 0.774 34 H 0.185 0.815 35 H 0.186 0.814 36 H 0.100 0.900 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.691 -4.441 6.014 7.665 hybrid contribution -0.226 1.542 0.587 1.665 sum -1.917 -2.899 6.601 7.460 Atomic orbital electron populations 1.69589 1.05977 1.28417 1.50170 1.25049 0.95128 0.99832 0.93065 0.86387 0.79861 0.82083 0.78633 1.20208 1.20777 1.19654 1.21571 0.94008 0.89835 1.52116 0.91209 1.19495 0.86112 0.92559 0.80934 1.86156 1.51694 1.54886 1.46293 1.22887 0.97410 0.94621 1.00709 1.22395 0.93145 0.95282 0.90387 1.48632 1.49291 1.12699 1.22205 1.17446 0.79985 0.86926 0.80950 1.90823 1.60431 1.14194 1.75966 1.20646 1.00600 0.95645 0.94651 1.23424 0.93566 0.91201 1.02584 1.21247 0.94556 1.02942 0.89931 1.21026 1.04332 0.90962 0.92306 1.43544 0.99025 1.01424 1.01187 1.94573 1.59881 0.99664 1.82303 1.94544 1.52689 1.78443 1.11665 1.20742 0.99498 0.91222 1.01665 1.17188 0.97229 0.79513 0.92436 1.91656 1.92106 1.31248 1.92802 1.23722 1.01927 0.78587 1.00915 0.91619 0.76413 0.89940 0.90231 0.91179 0.91163 0.77405 0.81542 0.81374 0.89963 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -19.76 10.96 55.43 0.61 -19.15 16 2 C 0.07 1.60 5.27 -17.82 -0.09 1.51 16 3 Si 0.90 18.01 29.54 -169.99 -5.02 12.99 16 4 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 7 C -0.54 -12.02 8.11 -34.44 -0.28 -12.30 16 8 H 0.07 1.57 7.77 -52.48 -0.41 1.17 16 9 C 0.25 5.10 0.85 -89.94 -0.08 5.02 16 10 O -0.58 -12.69 13.07 -35.23 -0.46 -13.15 16 11 C -0.12 -2.09 6.26 -24.32 -0.15 -2.25 16 12 C 0.11 1.87 6.89 -2.27 -0.02 1.85 16 13 N -0.60 -10.61 3.33 -174.99 -0.58 -11.19 16 14 C 0.56 10.05 7.80 -12.40 -0.10 9.95 16 15 O -0.54 -10.87 15.67 5.31 0.08 -10.78 16 16 C -0.11 -1.71 5.88 -104.91 -0.62 -2.32 16 17 C -0.09 -1.26 8.59 -39.19 -0.34 -1.60 16 18 C -0.07 -0.86 9.53 -39.64 -0.38 -1.23 16 19 C 0.00 -0.04 6.85 -79.88 -0.55 -0.59 16 20 N 0.03 0.38 4.45 33.99 0.15 0.53 16 21 O -0.15 -2.13 18.43 -29.46 -0.54 -2.67 16 22 O -0.16 -2.23 18.43 -29.46 -0.54 -2.77 16 23 C -0.11 -1.36 9.52 -39.56 -0.38 -1.74 16 24 C 0.16 2.24 7.28 -38.96 -0.28 1.95 16 25 F -0.10 -1.55 15.58 2.25 0.04 -1.52 16 26 C 0.07 1.28 3.38 -3.06 -0.01 1.27 16 27 H 0.27 5.82 8.31 -40.82 -0.34 5.48 16 28 H 0.38 8.49 7.23 45.56 0.33 8.82 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 31 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.21 3.15 2.77 -57.16 -0.16 2.99 16 34 H 0.17 1.90 7.60 -52.48 -0.40 1.50 16 35 H 0.17 1.71 7.59 -52.49 -0.40 1.31 16 36 H 0.08 1.52 6.34 -51.93 -0.33 1.19 16 37 H 0.08 1.51 6.65 -51.93 -0.35 1.17 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -24.67 323.69 -7.19 -31.85 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -2.53 Total: 11.47 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.26 Total: -0.47 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: 0.18 Total: -29.82 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -1.46 Total: -29.38 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.02 Total: 12.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -24.67 -7.19 -31.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.668 kcal (2) G-P(sol) polarization free energy of solvation -24.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds