Wall clock time and date at job start Tue Mar 31 2020 14:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99835 * 2 1 4 4 H 1.48503 * 109.47505 * 269.99805 * 3 2 1 5 5 H 1.48498 * 109.47254 * 30.00042 * 3 2 1 6 6 H 1.48501 * 109.47095 * 149.99835 * 3 2 1 7 7 C 1.37877 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99490 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00430 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.63836 * 59.29808 * 9 7 2 11 11 C 1.55153 * 110.72222 * 182.44025 * 9 7 2 12 12 C 1.55386 * 101.36595 * 153.94670 * 11 9 7 13 13 N 1.47426 * 104.87563 * 323.01982 * 12 11 9 14 14 C 1.34773 * 125.64850 * 204.16971 * 13 12 11 15 15 O 1.21567 * 120.00235 * 354.91111 * 14 13 12 16 16 C 1.47697 * 119.99808 * 174.90905 * 14 13 12 17 17 C 1.39658 * 120.16683 * 7.78056 * 16 14 13 18 18 C 1.37858 * 119.87484 * 180.02562 * 17 16 14 19 19 C 1.38460 * 120.22054 * 359.97438 * 18 17 16 20 20 N 1.48012 * 119.82764 * 180.02562 * 19 18 17 21 21 O 1.21803 * 120.00439 * 359.97438 * 20 19 18 22 22 O 1.21808 * 120.00065 * 180.02562 * 20 19 18 23 23 C 1.38202 * 120.33818 * 359.97438 * 19 18 17 24 24 C 1.38319 * 120.11760 * 359.76487 * 23 19 18 25 25 F 1.35103 * 120.11044 * 180.27135 * 24 23 19 26 26 C 1.47024 * 108.70121 * 24.12768 * 13 12 11 27 27 H 0.96993 * 119.99936 * 0.02562 * 1 2 3 28 28 H 0.96703 * 114.00072 * 300.69954 * 10 9 7 29 29 H 1.09001 * 111.00506 * 272.11659 * 11 9 7 30 30 H 1.08998 * 111.00313 * 35.96955 * 11 9 7 31 31 H 1.08994 * 110.34325 * 204.16764 * 12 11 9 32 32 H 1.09003 * 110.44089 * 81.91518 * 12 11 9 33 33 H 1.08000 * 120.06143 * 359.97303 * 17 16 14 34 34 H 1.08003 * 119.88453 * 180.02562 * 18 17 16 35 35 H 1.08002 * 119.93947 * 180.02562 * 23 19 18 36 36 H 1.08994 * 109.88363 * 239.52385 * 26 13 12 37 37 H 1.09002 * 109.87972 * 118.36126 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4084 -2.5943 -1.1497 11 6 2.2323 -3.6995 0.0630 12 6 1.3420 -4.7887 0.7229 13 7 0.5225 -4.0612 1.7092 14 6 -0.0441 -4.5976 2.8081 15 8 0.0247 -5.7953 3.0045 16 6 -0.7486 -3.7301 3.7739 17 6 -0.9715 -2.3841 3.4756 18 6 -1.6292 -1.5798 4.3816 19 6 -2.0698 -2.1021 5.5858 20 7 -2.7755 -1.2308 6.5520 21 8 -2.9670 -0.0574 6.2871 22 8 -3.1641 -1.6869 7.6125 23 6 -1.8550 -3.4331 5.8898 24 6 -1.2013 -4.2540 4.9886 25 9 -0.9962 -5.5564 5.2836 26 6 0.4266 -2.6536 1.2958 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2486 -1.8877 -1.2154 29 1 2.5463 -3.9998 -0.9367 30 1 3.0943 -3.4673 0.6883 31 1 1.9619 -5.5342 1.2208 32 1 0.7049 -5.2632 -0.0234 33 1 -0.6285 -1.9739 2.5372 34 1 -1.8020 -0.5389 4.1509 35 1 -2.2018 -3.8339 6.8308 36 1 0.8355 -2.0099 2.0745 37 1 -0.6147 -2.3932 1.1057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:57 Heat of formation + Delta-G solvation = -89.016169 kcal Electronic energy + Delta-G solvation = -27826.531489 eV Core-core repulsion = 23487.431803 eV Total energy + Delta-G solvation = -4339.099686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.34125 -43.44587 -41.77478 -39.94338 -39.03258 -37.83493 -36.15425 -34.23103 -33.90383 -32.35452 -31.70284 -29.78691 -28.41139 -27.16288 -25.10113 -24.48246 -23.53899 -21.73295 -21.15963 -20.68564 -19.98787 -19.19411 -18.79959 -18.55583 -17.91639 -17.81619 -17.35581 -17.23867 -16.92900 -16.57321 -16.16832 -15.45048 -15.27741 -14.87127 -14.74993 -14.66691 -14.34439 -13.96273 -13.86860 -13.47354 -13.45360 -13.11844 -12.82449 -12.80885 -12.57301 -12.39814 -12.34741 -12.30427 -12.18086 -12.07065 -11.43870 -11.14444 -11.00804 -10.61034 -10.47543 -10.21576 -9.75952 -8.25774 -6.38726 -1.72055 -0.51331 -0.20297 0.02863 1.28154 1.45392 1.52842 1.57622 1.68949 2.05937 2.41312 2.53216 2.93259 3.03236 3.06430 3.22328 3.41290 3.75581 3.78233 3.93845 4.05656 4.16120 4.27451 4.37147 4.44113 4.50371 4.55840 4.68554 4.79034 4.86472 5.04332 5.10373 5.15873 5.25096 5.44549 5.76871 6.03625 6.30789 6.33539 6.65670 6.78135 7.32581 7.42312 8.80679 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011246 B = 0.004961 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.184445 B = 5642.642429 C = 7743.782822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.044 3.956 3 Si 0.949 3.051 4 H -0.283 1.283 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.556 4.556 8 H 0.062 0.938 9 C 0.234 3.766 10 O -0.590 6.590 11 C -0.113 4.113 12 C 0.111 3.889 13 N -0.598 5.598 14 C 0.557 3.443 15 O -0.562 6.562 16 C -0.122 4.122 17 C -0.085 4.085 18 C -0.056 4.056 19 C -0.002 4.002 20 N 0.028 4.972 21 O -0.160 6.160 22 O -0.152 6.152 23 C -0.090 4.090 24 C 0.153 3.847 25 F -0.109 7.109 26 C 0.087 3.913 27 H 0.276 0.724 28 H 0.381 0.619 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.199 0.801 34 H 0.181 0.819 35 H 0.193 0.807 36 H 0.082 0.918 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 -2.439 7.473 8.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.158 4.158 3 Si 0.776 3.224 4 H -0.209 1.209 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.594 4.594 8 H 0.080 0.920 9 C 0.194 3.806 10 O -0.399 6.399 11 C -0.150 4.150 12 C -0.011 4.011 13 N -0.329 5.329 14 C 0.346 3.654 15 O -0.444 6.444 16 C -0.126 4.126 17 C -0.103 4.103 18 C -0.075 4.075 19 C -0.085 4.085 20 N 0.548 4.452 21 O -0.375 6.375 22 O -0.370 6.370 23 C -0.110 4.110 24 C 0.132 3.868 25 F -0.087 7.087 26 C -0.035 4.035 27 H 0.085 0.915 28 H 0.231 0.769 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.215 0.785 34 H 0.199 0.801 35 H 0.211 0.789 36 H 0.100 0.900 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.955 -3.977 7.043 8.322 hybrid contribution -0.159 1.404 0.274 1.439 sum -2.115 -2.574 7.317 8.040 Atomic orbital electron populations 1.69628 1.06282 1.28829 1.49853 1.25492 0.95772 1.01525 0.92989 0.85681 0.78934 0.79823 0.77946 1.20942 1.20518 1.19878 1.21746 0.93899 0.91012 1.52777 0.91957 1.19702 0.86692 0.92981 0.81264 1.86152 1.51774 1.54686 1.47257 1.22863 0.97171 0.93709 1.01297 1.22413 0.93105 0.95244 0.90348 1.48667 1.49344 1.12489 1.22419 1.17796 0.79631 0.86901 0.81034 1.90801 1.61587 1.15391 1.76583 1.20502 1.01498 0.95838 0.94797 1.23133 0.94050 0.90714 1.02427 1.21318 0.93433 1.03371 0.89413 1.21032 1.04212 0.91064 0.92148 1.43609 0.98942 1.01408 1.01217 1.94586 1.60499 0.99950 1.82474 1.94542 1.52371 1.78351 1.11728 1.20867 0.97719 0.90520 1.01856 1.17202 0.97792 0.79375 0.92439 1.91636 1.92281 1.31934 1.92831 1.23442 1.01299 0.78856 0.99891 0.91461 0.76890 0.89423 0.89529 0.90012 0.91328 0.78476 0.80146 0.78950 0.90018 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -39.10 10.96 21.45 0.24 -38.86 16 2 C 0.04 1.93 5.27 84.65 0.45 2.38 16 3 Si 0.95 36.29 29.54 68.60 2.03 38.32 16 4 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.56 -24.69 8.11 25.60 0.21 -24.48 16 8 H 0.06 2.80 7.77 -2.91 -0.02 2.77 16 9 C 0.23 9.47 0.85 -10.35 -0.01 9.46 16 10 O -0.59 -25.72 13.07 -148.98 -1.95 -27.67 16 11 C -0.11 -3.91 6.26 32.15 0.20 -3.71 16 12 C 0.11 3.69 6.89 87.02 0.60 4.29 16 13 N -0.60 -20.98 3.33 -825.80 -2.75 -23.73 16 14 C 0.56 19.75 7.80 86.74 0.68 20.43 16 15 O -0.56 -22.66 15.67 -3.93 -0.06 -22.73 16 16 C -0.12 -3.62 5.88 -20.05 -0.12 -3.74 16 17 C -0.09 -2.28 8.59 22.52 0.19 -2.08 16 18 C -0.06 -1.32 9.53 22.23 0.21 -1.10 16 19 C 0.00 -0.04 6.85 36.42 0.25 0.21 16 20 N 0.03 0.71 4.45 -46.36 -0.21 0.50 16 21 O -0.16 -4.34 18.43 18.88 0.35 -3.99 16 22 O -0.15 -3.89 18.43 18.88 0.35 -3.54 16 23 C -0.09 -1.97 9.52 22.28 0.21 -1.76 16 24 C 0.15 4.10 7.28 22.67 0.17 4.27 16 25 F -0.11 -3.24 15.58 44.97 0.70 -2.54 16 26 C 0.09 3.15 3.38 86.73 0.29 3.44 16 27 H 0.28 11.45 8.31 -92.71 -0.77 10.68 16 28 H 0.38 16.86 7.23 -74.05 -0.54 16.32 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.09 2.86 8.04 -2.39 -0.02 2.84 16 31 H 0.08 2.53 8.09 -2.39 -0.02 2.52 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.20 5.83 2.77 -7.30 -0.02 5.81 16 34 H 0.18 3.71 7.60 -2.91 -0.02 3.69 16 35 H 0.19 3.26 7.59 -2.91 -0.02 3.24 16 36 H 0.08 2.98 6.34 -2.39 -0.02 2.96 16 37 H 0.08 2.88 6.65 -2.39 -0.02 2.86 16 Total: -1.00 -50.39 323.69 2.64 -47.74 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.62 Total: 28.89 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 3.33 Total: 7.61 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -2.72 Total: -62.09 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -1.31 Total: -57.93 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.70 Total: -2.54 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 2.03 Total: 38.32 kcal Total: -50.39 2.64 -47.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.273 kcal (2) G-P(sol) polarization free energy of solvation -50.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds