Wall clock time and date at job start Tue Mar 31 2020 14:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00030 * 2 1 4 4 H 1.48495 * 109.47153 * 270.00402 * 3 2 1 5 5 H 1.48502 * 109.46634 * 30.00380 * 3 2 1 6 6 H 1.48493 * 109.46939 * 150.00140 * 3 2 1 7 7 C 1.37880 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99827 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99937 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.63951 * 300.69703 * 9 7 2 11 11 C 1.55154 * 110.71745 * 177.55979 * 9 7 2 12 12 C 1.54910 * 101.58003 * 205.95441 * 11 9 7 13 13 N 1.47421 * 104.83245 * 37.00730 * 12 11 9 14 14 C 1.34784 * 125.64626 * 155.90625 * 13 12 11 15 15 O 1.21572 * 119.99659 * 175.90016 * 14 13 12 16 16 C 1.47683 * 119.99909 * 355.90320 * 14 13 12 17 17 C 1.39657 * 120.17266 * 35.87188 * 16 14 13 18 18 C 1.37853 * 119.88198 * 179.97438 * 17 16 14 19 19 C 1.38457 * 120.21982 * 0.02562 * 18 17 16 20 20 N 1.48021 * 119.83238 * 179.97438 * 19 18 17 21 21 O 1.21802 * 119.99985 * 0.02562 * 20 19 18 22 22 O 1.21795 * 119.99906 * 179.97438 * 20 19 18 23 23 C 1.38201 * 120.33825 * 359.97438 * 19 18 17 24 24 C 1.38321 * 120.11724 * 359.73653 * 23 19 18 25 25 F 1.35103 * 120.11411 * 180.28600 * 24 23 19 26 26 C 1.47019 * 108.70527 * 335.87031 * 13 12 11 27 27 H 0.96994 * 119.99609 * 359.97438 * 1 2 3 28 28 H 0.96704 * 114.00006 * 56.86156 * 10 9 7 29 29 H 1.08999 * 111.00378 * 324.02557 * 11 9 7 30 30 H 1.08995 * 111.00707 * 87.84397 * 11 9 7 31 31 H 1.08996 * 110.36722 * 155.84887 * 12 11 9 32 32 H 1.09005 * 110.36598 * 278.17012 * 12 11 9 33 33 H 1.07998 * 120.05627 * 359.95652 * 17 16 14 34 34 H 1.08001 * 119.89242 * 179.97438 * 18 17 16 35 35 H 1.08004 * 119.94559 * 180.02562 * 23 19 18 36 36 H 1.08992 * 109.88564 * 241.64253 * 26 13 12 37 37 H 1.09002 * 109.88269 * 120.47233 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4075 -2.5948 1.1478 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5284 -4.0659 -1.7085 14 6 -0.0369 -4.6058 -2.8065 15 8 -0.7571 -3.9292 -3.5146 16 6 0.2186 -6.0194 -3.1493 17 6 0.3505 -6.9740 -2.1385 18 6 0.5885 -8.2920 -2.4653 19 6 0.6976 -8.6722 -3.7921 20 7 0.9537 -10.0896 -4.1333 21 8 1.0674 -10.9181 -3.2478 22 8 1.0497 -10.4275 -5.2995 23 6 0.5686 -7.7351 -4.7997 24 6 0.3237 -6.4099 -4.4879 25 9 0.1919 -5.4949 -5.4731 26 6 0.4281 -2.6579 -1.2975 27 1 -0.4849 0.8400 0.0004 28 1 -0.2247 -1.8681 1.2333 29 1 3.0947 -3.4670 -0.6886 30 1 2.5461 -3.9998 0.9357 31 1 1.9712 -5.5342 -1.2165 32 1 0.7124 -5.2631 0.0272 33 1 0.2666 -6.6801 -1.1027 34 1 0.6909 -9.0302 -1.6837 35 1 0.6544 -8.0387 -5.8326 36 1 -0.6139 -2.4001 -1.1087 37 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:00 Heat of formation + Delta-G solvation = -110.197583 kcal Electronic energy + Delta-G solvation = -27302.151979 eV Core-core repulsion = 22962.133798 eV Total energy + Delta-G solvation = -4340.018181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.38919 -43.39523 -41.66227 -40.00002 -38.96601 -37.78947 -36.28180 -34.21986 -33.68226 -32.31754 -31.76837 -29.75779 -28.51487 -26.97045 -25.09995 -24.34659 -23.65873 -21.59619 -21.12543 -20.73007 -19.93555 -19.20430 -18.74944 -18.68776 -17.94663 -17.71587 -17.52454 -17.07872 -16.87263 -16.58004 -16.15699 -15.58430 -15.24834 -14.87919 -14.83985 -14.70453 -14.35656 -14.05430 -13.78323 -13.55831 -13.39536 -13.20403 -12.88500 -12.77453 -12.55900 -12.42570 -12.35070 -12.34699 -12.28062 -12.14115 -11.41093 -11.21396 -10.94518 -10.67859 -10.45304 -10.33175 -9.76392 -8.30693 -6.46112 -1.66564 -0.50162 -0.14927 0.07237 1.27093 1.38960 1.42606 1.51023 1.66330 1.98594 2.35203 2.54174 2.95575 2.98152 3.06165 3.25476 3.43833 3.70795 3.79871 3.98397 4.08003 4.20217 4.32229 4.36428 4.42870 4.51565 4.56491 4.63807 4.85706 4.93947 5.06747 5.13094 5.17014 5.33612 5.45420 5.71752 6.00098 6.36243 6.36471 6.61289 6.80538 7.25677 7.33521 8.74970 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024954 B = 0.003065 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.774922 B = 9131.972038 C = 9695.698268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.235 3.765 10 O -0.585 6.585 11 C -0.114 4.114 12 C 0.092 3.908 13 N -0.598 5.598 14 C 0.551 3.449 15 O -0.576 6.576 16 C -0.113 4.113 17 C -0.048 4.048 18 C -0.043 4.043 19 C -0.005 4.005 20 N 0.027 4.973 21 O -0.136 6.136 22 O -0.177 6.177 23 C -0.088 4.088 24 C 0.140 3.860 25 F -0.122 7.122 26 C 0.118 3.882 27 H 0.271 0.729 28 H 0.378 0.622 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.192 0.808 34 H 0.203 0.797 35 H 0.185 0.815 36 H 0.037 0.963 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 -17.196 -2.576 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.086 0.914 9 C 0.194 3.806 10 O -0.394 6.394 11 C -0.152 4.152 12 C -0.029 4.029 13 N -0.329 5.329 14 C 0.340 3.660 15 O -0.457 6.457 16 C -0.117 4.117 17 C -0.067 4.067 18 C -0.062 4.062 19 C -0.088 4.088 20 N 0.548 4.452 21 O -0.358 6.358 22 O -0.388 6.388 23 C -0.107 4.107 24 C 0.118 3.882 25 F -0.100 7.100 26 C -0.005 4.005 27 H 0.080 0.920 28 H 0.228 0.772 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.209 0.791 34 H 0.220 0.780 35 H 0.202 0.798 36 H 0.056 0.944 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.739 -16.546 -2.816 17.006 hybrid contribution -0.340 2.002 -0.827 2.193 sum 2.399 -14.543 -3.643 15.184 Atomic orbital electron populations 1.69726 1.07008 1.28551 1.50204 1.25781 0.95774 1.02721 0.93137 0.85518 0.78955 0.78991 0.77984 1.20735 1.20810 1.18846 1.21870 0.94059 0.91374 1.52307 0.91351 1.19678 0.86626 0.93672 0.80624 1.86066 1.53544 1.52312 1.47434 1.22788 0.96952 0.93389 1.02047 1.22964 0.93565 0.95588 0.90794 1.48738 1.49474 1.11911 1.22812 1.18099 0.80564 0.86883 0.80470 1.90828 1.39374 1.63492 1.51971 1.20444 1.02990 0.94478 0.93778 1.21804 0.94072 0.89944 1.00853 1.21399 0.93184 0.97362 0.94227 1.21008 1.10974 0.80757 0.96050 1.43625 0.97733 1.03230 1.00644 1.94552 1.52273 1.46635 1.42370 1.94590 1.54894 1.85261 1.04096 1.20814 0.98008 0.89116 1.02779 1.17311 1.00610 0.86272 0.83961 1.91617 1.92635 1.65584 1.60183 1.22664 0.99947 0.79054 0.98826 0.92001 0.77207 0.89911 0.88340 0.87141 0.88388 0.79127 0.78049 0.79803 0.94442 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.72 10.97 21.45 0.24 -47.48 16 2 C 0.03 1.35 5.27 84.65 0.45 1.79 16 3 Si 0.96 40.51 29.54 68.60 2.03 42.54 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.56 -27.50 8.12 25.60 0.21 -27.29 16 8 H 0.07 3.28 7.77 -2.91 -0.02 3.26 16 9 C 0.23 10.33 0.86 -10.35 -0.01 10.32 16 10 O -0.59 -26.94 13.09 -148.98 -1.95 -28.89 16 11 C -0.11 -3.70 6.22 31.99 0.20 -3.50 16 12 C 0.09 2.34 5.12 86.86 0.44 2.78 16 13 N -0.60 -21.29 3.33 -815.39 -2.71 -24.00 16 14 C 0.55 19.71 7.43 86.74 0.64 20.35 16 15 O -0.58 -26.29 16.43 -3.94 -0.06 -26.35 16 16 C -0.11 -2.77 5.53 -20.05 -0.11 -2.88 16 17 C -0.05 -0.72 7.91 22.52 0.18 -0.54 16 18 C -0.04 -0.50 9.53 22.23 0.21 -0.29 16 19 C 0.00 -0.08 6.85 36.42 0.25 0.17 16 20 N 0.03 0.53 4.45 -46.36 -0.21 0.32 16 21 O -0.14 -2.64 18.43 18.88 0.35 -2.29 16 22 O -0.18 -3.91 18.43 18.89 0.35 -3.56 16 23 C -0.09 -1.58 9.52 22.28 0.21 -1.36 16 24 C 0.14 3.35 7.24 22.68 0.16 3.52 16 25 F -0.12 -3.68 16.13 44.97 0.73 -2.95 16 26 C 0.12 5.39 5.40 86.73 0.47 5.86 16 27 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 28 H 0.38 18.65 7.17 -74.05 -0.53 18.12 16 29 H 0.08 2.61 8.04 -2.39 -0.02 2.59 16 30 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.11 1.91 6.59 -2.39 -0.02 1.89 16 32 H 0.10 2.09 7.23 -2.38 -0.02 2.07 16 33 H 0.19 2.08 5.42 -2.91 -0.02 2.07 16 34 H 0.20 1.07 7.60 -2.91 -0.02 1.05 16 35 H 0.18 2.76 7.59 -2.91 -0.02 2.74 16 36 H 0.04 1.93 8.01 -2.39 -0.02 1.91 16 37 H 0.04 1.84 7.82 -2.39 -0.02 1.82 16 Total: -1.00 -65.59 326.81 2.68 -62.91 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.63 Total: 20.83 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 3.31 Total: 8.93 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -2.68 Total: -71.16 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -1.32 Total: -61.10 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.73 Total: -2.95 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -65.59 2.68 -62.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.291 kcal (2) G-P(sol) polarization free energy of solvation -65.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds