Wall clock time and date at job start Tue Mar 31 2020 14:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00018 * 2 1 4 4 H 1.48493 * 109.47103 * 239.99917 * 3 2 1 5 5 H 1.48492 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46512 * 120.00646 * 3 2 1 7 7 C 1.37877 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99907 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.64131 * 59.30561 * 9 7 2 11 11 C 1.55162 * 110.71538 * 182.44420 * 9 7 2 12 12 C 1.55387 * 101.36111 * 153.95037 * 11 9 7 13 13 N 1.47426 * 104.87540 * 323.01041 * 12 11 9 14 14 C 1.34777 * 125.65028 * 204.16823 * 13 12 11 15 15 O 1.21570 * 119.99738 * 175.16080 * 14 13 12 16 16 C 1.47724 * 119.99991 * 355.16218 * 14 13 12 17 17 C 1.39667 * 120.11573 * 300.44225 * 16 14 13 18 18 C 1.37819 * 119.87629 * 180.02562 * 17 16 14 19 19 C 1.38674 * 120.12223 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.88438 * 180.02562 * 19 18 17 21 21 C 1.38632 * 120.23641 * 0.02562 * 19 18 17 22 22 C 1.37859 * 120.11882 * 359.68042 * 21 19 18 23 23 N 1.48022 * 120.06342 * 180.30220 * 22 21 19 24 24 O 1.21798 * 119.99772 * 1.93260 * 23 22 21 25 25 O 1.21793 * 120.00017 * 181.93964 * 23 22 21 26 26 C 1.47028 * 108.69882 * 24.13964 * 13 12 11 27 27 H 0.96999 * 119.99605 * 359.97438 * 1 2 3 28 28 H 0.96702 * 114.00086 * 300.69575 * 10 9 7 29 29 H 1.09003 * 111.00495 * 272.11317 * 11 9 7 30 30 H 1.08991 * 111.00880 * 35.97136 * 11 9 7 31 31 H 1.09009 * 110.34260 * 204.16484 * 12 11 9 32 32 H 1.09001 * 110.44554 * 81.92078 * 12 11 9 33 33 H 1.08002 * 120.06611 * 0.02562 * 17 16 14 34 34 H 1.08005 * 119.93925 * 180.02562 * 18 17 16 35 35 H 1.08001 * 119.94120 * 179.97438 * 21 19 18 36 36 H 1.09002 * 109.87475 * 239.51791 * 26 13 12 37 37 H 1.09002 * 109.88390 * 118.35680 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4074 -2.5938 -1.1501 11 6 2.2322 -3.6995 0.0607 12 6 1.3423 -4.7890 0.7208 13 7 0.5236 -4.0619 1.7080 14 6 -0.0423 -4.5988 2.8071 15 8 -0.6254 -3.8857 3.6005 16 6 0.0460 -6.0536 3.0477 17 6 -0.4821 -6.9511 2.1171 18 6 -0.3975 -8.3074 2.3468 19 6 0.2111 -8.7814 3.4992 20 9 0.2918 -10.1119 3.7193 21 6 0.7369 -7.8949 4.4262 22 6 0.6631 -6.5364 4.2035 23 7 1.2309 -5.5911 5.1909 24 8 1.7951 -6.0139 6.1841 25 8 1.1338 -4.3906 5.0103 26 6 0.4273 -2.6541 1.2952 27 1 -0.4849 0.8401 0.0004 28 1 -0.2496 -1.8872 -1.2152 29 1 2.5455 -3.9995 -0.9393 30 1 3.0946 -3.4677 0.6855 31 1 1.9625 -5.5349 1.2180 32 1 0.7047 -5.2633 -0.0253 33 1 -0.9560 -6.5831 1.2190 34 1 -0.8052 -9.0024 1.6276 35 1 1.2095 -8.2693 5.3223 36 1 0.8369 -2.0107 2.0740 37 1 -0.6141 -2.3936 1.1060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:13 Heat of formation + Delta-G solvation = -89.938277 kcal Electronic energy + Delta-G solvation = -27952.871504 eV Core-core repulsion = 23613.731832 eV Total energy + Delta-G solvation = -4339.139672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.60725 -42.24916 -40.18527 -38.75031 -37.28525 -36.39907 -34.43826 -32.50293 -32.24647 -31.71645 -30.03153 -27.97964 -26.97262 -25.42210 -24.09527 -23.02863 -22.47988 -20.21952 -19.67217 -19.23008 -18.66574 -17.59581 -17.36567 -17.17378 -17.10012 -16.80346 -16.26605 -15.74725 -15.36618 -14.94157 -14.77592 -14.39769 -13.94469 -13.75918 -13.34803 -13.00227 -12.98375 -12.87509 -12.39656 -12.25734 -11.75907 -11.57143 -11.43399 -11.09169 -11.03208 -10.96478 -10.89076 -10.77405 -10.54594 -10.24392 -10.17787 -9.80700 -9.47059 -9.40694 -8.71080 -8.40826 -8.06316 -6.33171 -4.41546 -0.52062 0.17905 1.11733 1.21100 2.50834 2.87397 3.19505 3.24233 3.28075 3.30524 3.40553 3.88057 4.11227 4.20549 4.26479 4.36185 4.58048 4.92483 4.98950 5.09585 5.21374 5.26575 5.33685 5.54074 5.67030 5.80467 5.85863 6.01457 6.29529 6.36367 6.63023 6.76242 6.80866 7.20023 7.26694 7.63459 7.68915 7.89819 7.98631 8.40888 8.61561 9.24054 9.33836 10.74860 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.003772 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.284477 B = 7422.172610 C = 8182.258711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.586 6.586 11 C -0.116 4.116 12 C 0.097 3.903 13 N -0.598 5.598 14 C 0.556 3.444 15 O -0.503 6.503 16 C -0.056 4.056 17 C -0.059 4.059 18 C -0.104 4.104 19 C 0.114 3.886 20 F -0.120 7.120 21 C -0.098 4.098 22 C 0.015 3.985 23 N 0.017 4.983 24 O -0.169 6.169 25 O -0.096 6.096 26 C 0.105 3.895 27 H 0.272 0.728 28 H 0.385 0.615 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.074 0.926 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 -17.476 2.428 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.395 6.395 11 C -0.154 4.154 12 C -0.026 4.026 13 N -0.331 5.331 14 C 0.341 3.659 15 O -0.378 6.378 16 C -0.061 4.061 17 C -0.078 4.078 18 C -0.123 4.123 19 C 0.094 3.906 20 F -0.099 7.099 21 C -0.117 4.117 22 C -0.069 4.069 23 N 0.540 4.460 24 O -0.379 6.379 25 O -0.323 6.323 26 C -0.016 4.016 27 H 0.082 0.918 28 H 0.236 0.764 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.182 0.818 34 H 0.179 0.821 35 H 0.187 0.813 36 H 0.092 0.908 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.944 -18.073 2.374 18.253 hybrid contribution 0.219 1.237 0.522 1.361 sum -0.724 -16.836 2.896 17.098 Atomic orbital electron populations 1.69612 1.06024 1.28196 1.49599 1.25053 0.95058 0.99809 0.93161 0.86440 0.79573 0.81955 0.78876 1.20012 1.21034 1.19876 1.21458 0.93712 0.90024 1.52583 0.91499 1.19475 0.86119 0.92135 0.81343 1.86079 1.51732 1.55028 1.46688 1.22834 0.97538 0.94735 1.00288 1.22488 0.93484 0.95561 0.91020 1.48681 1.49343 1.13048 1.22036 1.17306 0.81543 0.85253 0.81829 1.90870 1.43026 1.60130 1.43789 1.20270 0.96164 0.97229 0.92442 1.21277 0.96967 0.91078 0.98505 1.21550 0.97640 0.96738 0.96334 1.17372 1.00341 0.77904 0.94987 1.91592 1.94176 1.29467 1.94636 1.20811 0.99568 0.90054 1.01312 1.20768 1.04796 0.89383 0.91908 1.43439 0.99417 1.02079 1.01046 1.94508 1.42434 1.82770 1.18191 1.94790 1.59865 0.96316 1.81361 1.23167 1.01965 0.77110 0.99381 0.91818 0.76371 0.90235 0.90333 0.92583 0.91312 0.81830 0.82071 0.81310 0.90772 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.08 10.96 55.43 0.61 -22.48 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -13.65 8.11 -34.44 -0.28 -13.93 16 8 H 0.07 1.67 7.77 -52.49 -0.41 1.26 16 9 C 0.25 5.71 0.85 -89.94 -0.08 5.63 16 10 O -0.59 -13.76 13.07 -35.23 -0.46 -14.22 16 11 C -0.12 -2.16 6.26 -24.32 -0.15 -2.32 16 12 C 0.10 1.55 6.04 -2.27 -0.01 1.54 16 13 N -0.60 -11.46 3.33 -171.36 -0.57 -12.03 16 14 C 0.56 10.51 5.80 -12.38 -0.07 10.43 16 15 O -0.50 -11.43 15.19 -18.70 -0.28 -11.72 16 16 C -0.06 -0.80 4.84 -104.97 -0.51 -1.31 16 17 C -0.06 -0.58 9.01 -39.20 -0.35 -0.94 16 18 C -0.10 -0.76 10.01 -39.57 -0.40 -1.15 16 19 C 0.11 0.97 7.31 -39.28 -0.29 0.69 16 20 F -0.12 -1.00 17.26 2.25 0.04 -0.96 16 21 C -0.10 -1.01 9.52 -39.57 -0.38 -1.39 16 22 C 0.01 0.21 6.88 -79.56 -0.55 -0.34 16 23 N 0.02 0.29 4.45 34.15 0.15 0.44 16 24 O -0.17 -2.77 18.45 -29.46 -0.54 -3.32 16 25 O -0.10 -1.97 15.01 -37.06 -0.56 -2.53 16 26 C 0.10 2.40 5.38 -3.07 -0.02 2.38 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.39 9.37 7.23 45.56 0.33 9.70 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 31 H 0.06 0.76 7.78 -51.92 -0.40 0.36 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.17 1.48 7.61 -52.49 -0.40 1.09 16 36 H 0.07 1.90 7.82 -51.93 -0.41 1.50 16 37 H 0.07 1.70 8.00 -51.93 -0.42 1.28 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -29.87 328.81 -7.80 -37.67 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -2.95 Total: 8.04 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.17 Total: 1.05 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.19 Total: -34.07 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.84 Total: -31.78 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.87 -7.80 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.271 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds