Wall clock time and date at job start Tue Mar 31 2020 14:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00018 * 2 1 4 4 H 1.48493 * 109.47103 * 239.99917 * 3 2 1 5 5 H 1.48492 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46512 * 120.00646 * 3 2 1 7 7 C 1.37877 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99907 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.64131 * 59.30561 * 9 7 2 11 11 C 1.55162 * 110.71538 * 182.44420 * 9 7 2 12 12 C 1.55387 * 101.36111 * 153.95037 * 11 9 7 13 13 N 1.47426 * 104.87540 * 323.01041 * 12 11 9 14 14 C 1.34777 * 125.65028 * 204.16823 * 13 12 11 15 15 O 1.21570 * 119.99738 * 175.16080 * 14 13 12 16 16 C 1.47724 * 119.99991 * 355.16218 * 14 13 12 17 17 C 1.39667 * 120.11573 * 300.44225 * 16 14 13 18 18 C 1.37819 * 119.87629 * 180.02562 * 17 16 14 19 19 C 1.38674 * 120.12223 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.88438 * 180.02562 * 19 18 17 21 21 C 1.38632 * 120.23641 * 0.02562 * 19 18 17 22 22 C 1.37859 * 120.11882 * 359.68042 * 21 19 18 23 23 N 1.48022 * 120.06342 * 180.30220 * 22 21 19 24 24 O 1.21798 * 119.99772 * 1.93260 * 23 22 21 25 25 O 1.21793 * 120.00017 * 181.93964 * 23 22 21 26 26 C 1.47028 * 108.69882 * 24.13964 * 13 12 11 27 27 H 0.96999 * 119.99605 * 359.97438 * 1 2 3 28 28 H 0.96702 * 114.00086 * 300.69575 * 10 9 7 29 29 H 1.09003 * 111.00495 * 272.11317 * 11 9 7 30 30 H 1.08991 * 111.00880 * 35.97136 * 11 9 7 31 31 H 1.09009 * 110.34260 * 204.16484 * 12 11 9 32 32 H 1.09001 * 110.44554 * 81.92078 * 12 11 9 33 33 H 1.08002 * 120.06611 * 0.02562 * 17 16 14 34 34 H 1.08005 * 119.93925 * 180.02562 * 18 17 16 35 35 H 1.08001 * 119.94120 * 179.97438 * 21 19 18 36 36 H 1.09002 * 109.87475 * 239.51791 * 26 13 12 37 37 H 1.09002 * 109.88390 * 118.35680 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4074 -2.5938 -1.1501 11 6 2.2322 -3.6995 0.0607 12 6 1.3423 -4.7890 0.7208 13 7 0.5236 -4.0619 1.7080 14 6 -0.0423 -4.5988 2.8071 15 8 -0.6254 -3.8857 3.6005 16 6 0.0460 -6.0536 3.0477 17 6 -0.4821 -6.9511 2.1171 18 6 -0.3975 -8.3074 2.3468 19 6 0.2111 -8.7814 3.4992 20 9 0.2918 -10.1119 3.7193 21 6 0.7369 -7.8949 4.4262 22 6 0.6631 -6.5364 4.2035 23 7 1.2309 -5.5911 5.1909 24 8 1.7951 -6.0139 6.1841 25 8 1.1338 -4.3906 5.0103 26 6 0.4273 -2.6541 1.2952 27 1 -0.4849 0.8401 0.0004 28 1 -0.2496 -1.8872 -1.2152 29 1 2.5455 -3.9995 -0.9393 30 1 3.0946 -3.4677 0.6855 31 1 1.9625 -5.5349 1.2180 32 1 0.7047 -5.2633 -0.0253 33 1 -0.9560 -6.5831 1.2190 34 1 -0.8052 -9.0024 1.6276 35 1 1.2095 -8.2693 5.3223 36 1 0.8369 -2.0107 2.0740 37 1 -0.6141 -2.3936 1.1060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:13 Heat of formation + Delta-G solvation = -109.688921 kcal Electronic energy + Delta-G solvation = -27953.727956 eV Core-core repulsion = 23613.731832 eV Total energy + Delta-G solvation = -4339.996124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.28152 -43.46788 -41.47044 -39.97482 -38.85334 -37.71278 -36.14703 -34.20283 -33.39133 -32.81017 -31.50420 -29.63889 -28.17904 -27.10237 -25.28624 -24.16993 -23.69888 -21.60351 -21.24840 -20.39672 -19.80971 -19.18457 -18.79452 -18.56996 -17.94481 -17.67975 -17.41101 -16.95567 -16.83508 -16.52897 -16.13309 -15.62241 -15.02102 -14.89957 -14.84519 -14.56201 -14.40335 -13.96101 -13.77515 -13.52128 -13.32114 -13.15469 -12.85851 -12.79907 -12.56587 -12.38754 -12.37992 -12.33381 -12.21339 -12.11970 -11.28965 -11.19703 -10.96174 -10.65263 -10.38689 -10.28316 -9.66703 -8.28414 -6.43195 -1.59266 -0.63968 0.01701 0.12638 1.35331 1.41338 1.43683 1.50391 1.71430 1.98361 2.37389 2.60337 2.98717 3.03843 3.07334 3.42624 3.48091 3.69630 3.73684 4.02535 4.09402 4.19242 4.33496 4.40835 4.49319 4.56193 4.62841 4.65879 4.94343 5.01189 5.07396 5.16393 5.20706 5.34508 5.47153 5.73451 6.03069 6.28128 6.46340 6.62943 6.95853 7.27728 7.35793 8.77594 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.003772 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.284477 B = 7422.172610 C = 8182.258711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.030 3.970 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.562 4.562 8 H 0.064 0.936 9 C 0.238 3.762 10 O -0.583 6.583 11 C -0.113 4.113 12 C 0.104 3.896 13 N -0.604 5.604 14 C 0.555 3.445 15 O -0.556 6.556 16 C -0.078 4.078 17 C -0.049 4.049 18 C -0.066 4.066 19 C 0.132 3.868 20 F -0.110 7.110 21 C -0.087 4.087 22 C -0.004 4.004 23 N 0.020 4.980 24 O -0.127 6.127 25 O -0.202 6.202 26 C 0.124 3.876 27 H 0.271 0.729 28 H 0.378 0.622 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.183 0.817 34 H 0.211 0.789 35 H 0.186 0.814 36 H 0.029 0.971 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 -21.866 1.289 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.172 4.172 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.600 4.600 8 H 0.082 0.918 9 C 0.198 3.802 10 O -0.391 6.391 11 C -0.151 4.151 12 C -0.018 4.018 13 N -0.336 5.336 14 C 0.342 3.658 15 O -0.435 6.435 16 C -0.082 4.082 17 C -0.067 4.067 18 C -0.084 4.084 19 C 0.112 3.888 20 F -0.089 7.089 21 C -0.107 4.107 22 C -0.088 4.088 23 N 0.537 4.463 24 O -0.354 6.354 25 O -0.405 6.405 26 C 0.001 3.999 27 H 0.080 0.920 28 H 0.228 0.772 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.201 0.799 34 H 0.228 0.772 35 H 0.203 0.797 36 H 0.047 0.953 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.604 -22.325 1.122 22.361 hybrid contribution 0.121 2.289 0.975 2.491 sum -0.483 -20.035 2.097 20.151 Atomic orbital electron populations 1.69709 1.06940 1.28602 1.50062 1.25745 0.95810 1.02608 0.93000 0.85588 0.78482 0.78696 0.78794 1.19068 1.20788 1.20263 1.21832 0.93932 0.91625 1.52630 0.91752 1.19605 0.86623 0.93285 0.80736 1.86060 1.51579 1.54566 1.46912 1.22819 0.96860 0.93733 1.01662 1.22657 0.93383 0.94868 0.90866 1.48675 1.50120 1.11677 1.23141 1.18013 0.79925 0.87416 0.80419 1.90822 1.45082 1.62338 1.45242 1.19931 0.99513 0.94376 0.94424 1.21527 0.95823 0.91497 0.97888 1.21993 0.94531 0.95921 0.95954 1.17354 0.99070 0.77853 0.94546 1.91641 1.93932 1.28731 1.94553 1.21004 0.98977 0.88362 1.02347 1.20798 1.06896 0.89721 0.91344 1.43920 0.98735 1.02257 1.01420 1.94426 1.40138 1.82421 1.18368 1.94834 1.64400 0.98150 1.83074 1.22581 0.99738 0.79262 0.98349 0.91956 0.77214 0.88378 0.90732 0.89319 0.88520 0.79937 0.77184 0.79674 0.95289 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.23 10.96 21.45 0.24 -49.00 16 2 C 0.03 1.55 5.28 84.65 0.45 2.00 16 3 Si 0.96 42.38 29.54 68.60 2.03 44.40 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.56 -29.42 8.11 25.60 0.21 -29.21 16 8 H 0.06 3.30 7.77 -2.91 -0.02 3.28 16 9 C 0.24 11.18 0.85 -10.35 -0.01 11.17 16 10 O -0.58 -27.75 13.07 -148.98 -1.95 -29.70 16 11 C -0.11 -4.13 6.26 32.16 0.20 -3.93 16 12 C 0.10 3.11 6.04 87.02 0.53 3.64 16 13 N -0.60 -23.79 3.33 -814.34 -2.71 -26.50 16 14 C 0.55 21.81 5.80 86.75 0.50 22.31 16 15 O -0.56 -27.49 15.19 19.01 0.29 -27.20 16 16 C -0.08 -2.10 4.84 -20.09 -0.10 -2.20 16 17 C -0.05 -0.74 9.01 22.52 0.20 -0.54 16 18 C -0.07 -0.53 10.01 22.27 0.22 -0.30 16 19 C 0.13 1.49 7.31 22.47 0.16 1.66 16 20 F -0.11 -1.16 17.26 44.97 0.78 -0.38 16 21 C -0.09 -1.47 9.52 22.27 0.21 -1.26 16 22 C 0.00 -0.10 6.88 36.62 0.25 0.15 16 23 N 0.02 0.69 4.45 -45.87 -0.20 0.49 16 24 O -0.13 -4.08 18.45 18.89 0.35 -3.73 16 25 O -0.20 -9.01 15.01 26.16 0.39 -8.62 16 26 C 0.12 6.05 5.38 86.72 0.47 6.52 16 27 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.38 19.04 7.23 -74.06 -0.54 18.50 16 29 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.07 2.75 8.04 -2.39 -0.02 2.73 16 31 H 0.09 2.12 7.78 -2.38 -0.02 2.10 16 32 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.21 -0.18 8.06 -2.91 -0.02 -0.20 16 35 H 0.19 2.50 7.61 -2.91 -0.02 2.48 16 36 H 0.03 1.63 7.82 -2.39 -0.02 1.61 16 37 H 0.04 2.12 8.00 -2.39 -0.02 2.10 16 Total: -1.00 -73.53 328.81 3.11 -70.41 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.61 Total: 19.83 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 3.30 Total: 9.99 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -2.68 Total: -75.01 kcal Atomic # 8 Polarization: -68.32 SS G_CDS: -0.92 Total: -69.24 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.78 Total: -0.38 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -73.53 3.11 -70.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.277 kcal (2) G-P(sol) polarization free energy of solvation -73.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds