Wall clock time and date at job start Tue Mar 31 2020 14:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99767 * 2 1 4 4 H 1.48501 * 109.47011 * 239.99269 * 3 2 1 5 5 H 1.48498 * 109.47218 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47083 * 119.99857 * 3 2 1 7 7 C 1.37876 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99490 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00127 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64293 * 300.70575 * 9 7 2 11 11 C 1.55154 * 110.72137 * 177.56108 * 9 7 2 12 12 C 1.54914 * 101.58047 * 205.96239 * 11 9 7 13 13 N 1.47423 * 104.83550 * 37.00666 * 12 11 9 14 14 C 1.34775 * 125.64753 * 155.90650 * 13 12 11 15 15 O 1.21572 * 119.99717 * 175.01498 * 14 13 12 16 16 C 1.47722 * 120.00122 * 355.01816 * 14 13 12 17 17 C 1.39668 * 120.12246 * 55.84722 * 16 14 13 18 18 C 1.37809 * 119.88207 * 179.76946 * 17 16 14 19 19 C 1.38675 * 120.11731 * 0.51226 * 18 17 16 20 20 F 1.35103 * 119.88271 * 179.76413 * 19 18 17 21 21 C 1.38634 * 120.24255 * 359.74320 * 19 18 17 22 22 C 1.37860 * 120.11598 * 359.97438 * 21 19 18 23 23 N 1.48011 * 120.06208 * 179.97438 * 22 21 19 24 24 O 1.21805 * 119.99847 * 6.71275 * 23 22 21 25 25 O 1.21795 * 120.00199 * 186.72009 * 23 22 21 26 26 C 1.47020 * 108.69912 * 335.87412 * 13 12 11 27 27 H 0.97001 * 120.00168 * 0.02562 * 1 2 3 28 28 H 0.96703 * 113.99970 * 56.85320 * 10 9 7 29 29 H 1.09006 * 111.00138 * 324.03034 * 11 9 7 30 30 H 1.08996 * 111.00836 * 87.84745 * 11 9 7 31 31 H 1.09004 * 110.36770 * 155.84943 * 12 11 9 32 32 H 1.09000 * 110.36260 * 278.16499 * 12 11 9 33 33 H 1.08000 * 120.05462 * 0.02783 * 17 16 14 34 34 H 1.08001 * 119.94618 * 180.27754 * 18 17 16 35 35 H 1.07997 * 119.94473 * 179.97438 * 21 19 18 36 36 H 1.09007 * 109.87876 * 241.63582 * 26 13 12 37 37 H 1.09002 * 109.88108 * 120.48227 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.4082 -2.5932 1.1519 11 6 2.2321 -3.6995 -0.0596 12 6 1.3482 -4.7905 -0.7142 13 7 0.5271 -4.0681 -1.7027 14 6 -0.0389 -4.6094 -2.7995 15 8 -0.7724 -3.9382 -3.4991 16 6 0.2320 -6.0182 -3.1516 17 6 -0.0243 -7.0335 -2.2273 18 6 0.2258 -8.3465 -2.5627 19 6 0.7410 -8.6597 -3.8115 20 9 0.9889 -9.9482 -4.1336 21 6 1.0023 -7.6556 -4.7309 22 6 0.7503 -6.3392 -4.4079 23 7 1.0302 -5.2681 -5.3902 24 8 1.3668 -5.5552 -6.5250 25 8 0.9241 -4.0995 -5.0638 26 6 0.4272 -2.6595 -1.2934 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2239 -1.8664 1.2368 29 1 3.0942 -3.4679 -0.6852 30 1 2.5466 -3.9986 0.9402 31 1 1.9703 -5.5358 -1.2098 32 1 0.7124 -5.2631 0.0345 33 1 -0.4216 -6.7902 -1.2530 34 1 0.0238 -9.1328 -1.8503 35 1 1.4038 -7.9049 -5.7020 36 1 -0.6148 -2.4015 -1.1043 37 1 0.8346 -2.0169 -2.0739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:16 Heat of formation + Delta-G solvation = -90.163611 kcal Electronic energy + Delta-G solvation = -27960.595649 eV Core-core repulsion = 23621.446206 eV Total energy + Delta-G solvation = -4339.149443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.60906 -42.23469 -40.20513 -38.74493 -37.29676 -36.38325 -34.46487 -32.49855 -32.24103 -31.72100 -30.05116 -27.98660 -26.96584 -25.41231 -24.14947 -22.97969 -22.47802 -20.24064 -19.66584 -19.20848 -18.65425 -17.60961 -17.35276 -17.18699 -17.09203 -16.79926 -16.26917 -15.76879 -15.30251 -14.94673 -14.79512 -14.43128 -13.94725 -13.75554 -13.34875 -13.03137 -13.01297 -12.84987 -12.39770 -12.23556 -11.75416 -11.57153 -11.43673 -11.09678 -11.03907 -10.93606 -10.89785 -10.76714 -10.55644 -10.24729 -10.16886 -9.80449 -9.47362 -9.39401 -8.71253 -8.41078 -8.06219 -6.33060 -4.42083 -0.51195 0.17136 1.12485 1.22482 2.49447 2.88390 3.20742 3.24967 3.28109 3.30334 3.40371 3.87198 4.11004 4.20634 4.26474 4.33835 4.58063 4.92703 4.99279 5.08504 5.21129 5.26085 5.32593 5.53342 5.66934 5.80352 5.85169 6.01369 6.31080 6.37163 6.62948 6.76326 6.81761 7.21072 7.27938 7.64992 7.68877 7.89422 7.98093 8.40493 8.61286 9.24577 9.33943 10.74706 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.003812 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.841374 B = 7342.958534 C = 8145.426301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.586 6.586 11 C -0.117 4.117 12 C 0.096 3.904 13 N -0.596 5.596 14 C 0.557 3.443 15 O -0.507 6.507 16 C -0.057 4.057 17 C -0.061 4.061 18 C -0.105 4.105 19 C 0.115 3.885 20 F -0.120 7.120 21 C -0.098 4.098 22 C 0.017 3.983 23 N 0.017 4.983 24 O -0.170 6.170 25 O -0.095 6.095 26 C 0.105 3.895 27 H 0.272 0.728 28 H 0.386 0.614 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.070 0.930 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 -17.492 -2.935 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.210 3.790 10 O -0.396 6.396 11 C -0.155 4.155 12 C -0.027 4.027 13 N -0.329 5.329 14 C 0.342 3.658 15 O -0.383 6.383 16 C -0.062 4.062 17 C -0.080 4.080 18 C -0.123 4.123 19 C 0.095 3.905 20 F -0.099 7.099 21 C -0.118 4.118 22 C -0.066 4.066 23 N 0.541 4.459 24 O -0.380 6.380 25 O -0.323 6.323 26 C -0.016 4.016 27 H 0.082 0.918 28 H 0.237 0.763 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.182 0.818 34 H 0.179 0.821 35 H 0.187 0.813 36 H 0.088 0.912 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.821 -18.183 -2.862 18.426 hybrid contribution 0.213 1.302 -0.538 1.425 sum 1.034 -16.881 -3.400 17.251 Atomic orbital electron populations 1.69614 1.06009 1.28234 1.49469 1.25062 0.95061 0.99820 0.93167 0.86442 0.79570 0.81972 0.78863 1.19882 1.21018 1.20013 1.21450 0.93710 0.89999 1.52715 0.91485 1.19467 0.86061 0.92126 0.81389 1.86071 1.53674 1.52830 1.47017 1.22764 0.97602 0.94816 1.00349 1.22459 0.93543 0.95741 0.90964 1.48672 1.49278 1.13067 1.21912 1.17299 0.82313 0.84711 0.81479 1.90868 1.36446 1.60705 1.50279 1.20257 0.96761 0.97550 0.91651 1.21316 0.96975 0.90178 0.99545 1.21542 0.97263 0.98170 0.95369 1.17375 1.00660 0.78755 0.93756 1.91593 1.91773 1.33569 1.92930 1.20811 0.99701 0.89322 1.01947 1.20753 1.07654 0.87963 0.90232 1.43398 0.98954 1.02218 1.01306 1.94509 1.49806 1.88953 1.04685 1.94771 1.52401 1.01306 1.83778 1.23159 1.02125 0.76902 0.99420 0.91776 0.76278 0.90364 0.90267 0.92351 0.91223 0.81838 0.82070 0.81313 0.91208 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.12 10.97 55.43 0.61 -22.51 16 2 C 0.07 1.84 5.26 -17.82 -0.09 1.74 16 3 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.63 8.12 -34.44 -0.28 -13.91 16 8 H 0.07 1.66 7.77 -52.49 -0.41 1.26 16 9 C 0.25 5.71 0.86 -89.94 -0.08 5.64 16 10 O -0.59 -13.84 13.09 -35.23 -0.46 -14.30 16 11 C -0.12 -2.16 6.22 -24.58 -0.15 -2.32 16 12 C 0.10 1.50 5.67 -2.53 -0.01 1.49 16 13 N -0.60 -11.43 3.33 -171.67 -0.57 -12.00 16 14 C 0.56 10.56 5.86 -12.39 -0.07 10.48 16 15 O -0.51 -11.59 15.18 -18.67 -0.28 -11.88 16 16 C -0.06 -0.82 4.98 -104.97 -0.52 -1.34 16 17 C -0.06 -0.59 8.40 -39.20 -0.33 -0.92 16 18 C -0.10 -0.76 10.01 -39.58 -0.40 -1.15 16 19 C 0.11 0.98 7.31 -39.27 -0.29 0.69 16 20 F -0.12 -1.00 17.26 2.25 0.04 -0.96 16 21 C -0.10 -1.02 9.53 -39.57 -0.38 -1.40 16 22 C 0.02 0.25 6.85 -79.57 -0.55 -0.30 16 23 N 0.02 0.30 4.45 34.15 0.15 0.45 16 24 O -0.17 -2.82 18.47 -29.46 -0.54 -3.37 16 25 O -0.09 -1.96 15.04 -37.05 -0.56 -2.52 16 26 C 0.10 2.41 5.40 -3.07 -0.02 2.39 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.39 9.47 7.17 45.56 0.33 9.80 16 29 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 0.75 7.30 -51.93 -0.38 0.37 16 32 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 33 H 0.16 1.33 7.47 -52.49 -0.39 0.94 16 34 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.17 1.50 7.62 -52.49 -0.40 1.10 16 36 H 0.07 1.75 8.01 -51.93 -0.42 1.34 16 37 H 0.07 1.90 7.82 -51.93 -0.41 1.49 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -30.04 326.69 -7.76 -37.80 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -2.88 Total: 8.21 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -3.16 Total: 1.09 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.19 Total: -34.06 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -1.85 Total: -32.06 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.04 -7.76 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.366 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds